View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4452_high_24 (Length: 226)
Name: NF4452_high_24
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 48144687 - 48144496
Alignment:
| Q |
19 |
cttgttgccatgcctaaagtgatagaatatttatcttagattttgtaagaggtatacttattttagacgactaagcaaatataacacccctaaagcaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48144687 |
cttgttgccatgcctaaagtgatagaatatttatcttagattttgtaagaggtatacttattttagacgactaagcaaatataacacccctaaagcaaat |
48144588 |
T |
|
| Q |
119 |
agtattaagatggaattgattgattttatattttcaattgataactattacctttcaagttgaatt-cttctttaattaatagatatcctat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48144587 |
agtattaagatggaattgattgattttatattttcaattgataactattacctttcaagttgaattagttctttaattaatagatatcctat |
48144496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University