View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4452_high_3 (Length: 626)
Name: NF4452_high_3
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 609
Target Start/End: Complemental strand, 42928712 - 42928137
Alignment:
| Q |
17 |
atgaactgtgatgtatatttatcttattatattcaagcatatataatacaggtcgttaannnnnnnnatgatatacagtctgttcattagctccaaaaca |
116 |
Q |
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| T |
42928712 |
atgaactgtgatgtatatttatcttattatattcaagcatatataatacaggtcgttaattttttttatgacatacagtctgttcattagctccaaaaca |
42928613 |
T |
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| Q |
117 |
ttgagtnnnnnnn-ttagctacaaaactttctgtaaaaaattggacatcatagctataattagaactacaatttcatttctatacattaacaatgtacca |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42928612 |
ttgagtaagaaaaattagctacaaaactttctgtaaaaaattggacatcatagctataattagaactacaatttcatttctatacattaacaatgtaccc |
42928513 |
T |
|
| Q |
216 |
attatagaactaggtaattttgatgttctaatacaatagtagaaaatctcaaaatggcagtgcaaggtagaaaatgacttgcctgtcttcttagctcaac |
315 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42928512 |
attatagaaccaggtaattttgatgttctaatacaatagtagaaaatctcaaaatggcagtgcaaggtagaaaatgacttgcctgtcttcttagctcaac |
42928413 |
T |
|
| Q |
316 |
aaagttgtggaagccttcaacaagaaatgaagactgacacctaaacaaacaatccataacaaataaagagatattaaagtgcttacatgaaatagagaag |
415 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42928412 |
aaagttgtggcagccttcaacaagaaatgaagactgatacctaaacaaacaatccataacaaataaagagatattaaagtgcttacatgaaatagagaag |
42928313 |
T |
|
| Q |
416 |
atgcttaattcattttggtggggtcatgatgccacaaattctaaaggaattcactggatgtcatgggagcgtgtttcaactccgaagagcttcggcagta |
515 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42928312 |
atgc------------------gtcataatgccacaaattctaaaggaattcactggatgtcatgggagcgtctttcaactccgaagagcttcggcagta |
42928231 |
T |
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| Q |
516 |
tgggattcaagaatctcaaagctttcaacattgctatgattggcaagcaagcttggaaattagtaacaagtccgaattctttaatcactaaatt |
609 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42928230 |
tgggattcaagaatctcaaagctttaaacatggctatgattggcaagcaagcttggaaactagtaacaagtccgaattctttaatcactaaatt |
42928137 |
T |
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