View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4452_high_6 (Length: 441)

Name: NF4452_high_6
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4452_high_6
NF4452_high_6
[»] chr7 (15 HSPs)
chr7 (37-342)||(44962866-44963171)
chr7 (195-329)||(28124826-28124962)
chr7 (221-322)||(4895468-4895570)
chr7 (275-342)||(44962224-44962291)
chr7 (221-322)||(6323957-6324058)
chr7 (279-329)||(20046735-20046785)
chr7 (279-329)||(28126653-28126703)
chr7 (404-441)||(4895654-4895691)
chr7 (404-441)||(28124712-28124749)
chr7 (404-441)||(28126539-28126576)
chr7 (404-441)||(37405574-37405611)
chr7 (404-441)||(44963233-44963270)
chr7 (230-281)||(21631461-21631513)
chr7 (404-441)||(20046620-20046658)
chr7 (277-311)||(36989612-36989646)
[»] chr4 (17 HSPs)
chr4 (235-342)||(23564898-23565006)
chr4 (195-329)||(52520458-52520594)
chr4 (279-342)||(7040306-7040369)
chr4 (290-342)||(18656064-18656116)
chr4 (279-329)||(52518702-52518752)
chr4 (404-441)||(3529271-3529308)
chr4 (404-441)||(7040431-7040468)
chr4 (404-441)||(23564799-23564836)
chr4 (404-441)||(23566473-23566510)
chr4 (404-441)||(52520671-52520708)
chr4 (404-441)||(54296498-54296535)
chr4 (405-441)||(23985845-23985881)
chr4 (279-342)||(3274663-3274726)
chr4 (221-281)||(18807593-18807655)
chr4 (404-441)||(18656178-18656215)
chr4 (404-441)||(52518829-52518866)
chr4 (279-311)||(23566594-23566626)
[»] chr6 (19 HSPs)
chr6 (235-339)||(19645526-19645631)
chr6 (221-329)||(5378616-5378725)
chr6 (250-342)||(9414935-9415027)
chr6 (276-342)||(15149268-15149334)
chr6 (258-334)||(9415031-9415107)
chr6 (404-441)||(15868462-15868499)
chr6 (221-281)||(33869174-33869235)
chr6 (405-441)||(1088777-1088813)
chr6 (279-329)||(5376820-5376870)
chr6 (404-441)||(15866650-15866687)
chr6 (221-281)||(15868320-15868381)
chr6 (404-441)||(19645424-19645461)
chr6 (404-441)||(33866169-33866206)
chr6 (407-440)||(33869319-33869352)
chr6 (404-441)||(5376947-5376985)
chr6 (404-441)||(5378802-5378840)
chr6 (407-441)||(9415141-9415175)
chr6 (279-317)||(30376227-30376265)
chr6 (221-281)||(14620439-14620500)
[»] chr8 (12 HSPs)
chr8 (277-342)||(31032222-31032287)
chr8 (279-342)||(30224175-30224238)
chr8 (277-342)||(3375646-3375711)
chr8 (279-342)||(5567371-5567434)
chr8 (404-441)||(25249076-25249113)
chr8 (404-441)||(30224300-30224337)
chr8 (279-330)||(5567676-5567727)
chr8 (404-439)||(6428810-6428845)
chr8 (404-441)||(5567496-5567533)
chr8 (404-440)||(3375548-3375584)
chr8 (291-342)||(6428699-6428748)
chr8 (279-311)||(25248957-25248989)
[»] chr2 (8 HSPs)
chr2 (277-342)||(8759206-8759271)
chr2 (279-342)||(29758065-29758128)
chr2 (158-285)||(18776617-18776746)
chr2 (284-334)||(31155713-31155763)
chr2 (221-273)||(25306655-25306708)
chr2 (404-441)||(29758190-29758227)
chr2 (288-342)||(20516173-20516227)
chr2 (230-281)||(17308534-17308586)
[»] scaffold0311 (1 HSPs)
scaffold0311 (160-263)||(14914-15018)
[»] chr3 (7 HSPs)
chr3 (277-342)||(1139956-1140021)
chr3 (279-338)||(6789565-6789624)
chr3 (279-329)||(17403021-17403071)
chr3 (404-441)||(1140071-1140108)
chr3 (404-441)||(6789690-6789727)
chr3 (404-441)||(17402906-17402944)
chr3 (221-281)||(4608927-4608988)
[»] chr1 (11 HSPs)
chr1 (276-342)||(17449253-17449319)
chr1 (279-342)||(48940621-48940684)
chr1 (279-329)||(16808817-16808867)
chr1 (404-441)||(3282871-3282908)
chr1 (404-441)||(3284572-3284609)
chr1 (404-441)||(9312099-9312136)
chr1 (404-441)||(17449381-17449418)
chr1 (221-281)||(3284430-3284491)
chr1 (404-441)||(16808703-16808740)
chr1 (404-441)||(9310482-9310519)
chr1 (279-316)||(51020572-51020609)
[»] scaffold0251 (2 HSPs)
scaffold0251 (404-441)||(6296-6333)
scaffold0251 (225-281)||(6158-6215)
[»] scaffold0057 (1 HSPs)
scaffold0057 (404-441)||(58856-58893)
[»] chr5 (5 HSPs)
chr5 (213-281)||(4895939-4896010)
chr5 (404-441)||(39787183-39787220)
chr5 (221-272)||(33689796-33689848)
chr5 (221-281)||(25502243-25502305)
chr5 (221-281)||(10412181-10412242)
[»] scaffold0245 (1 HSPs)
scaffold0245 (221-269)||(11027-11076)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 37 - 342
Target Start/End: Original strand, 44962866 - 44963171
Alignment:
Q  37 atgctcaaggttacgccttcaactcaaatttgaaacatgcatctgcctttcccaactgggctttggcctatacaatctgctggattcatcttggggctct 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44962866 atgctcaaggttacgccttcaactcaaatttgaaacatgcatctgcctttcccaactgggctttggcctatacaatctgctggattcatcttggggctct 44962965  T
Q  137 ttccatttcatcattttcttgtcttttactagtttacaccttatgttttacttcgtccttatagtatgcaaatttcaattgtaattcattgtatttcgaa 236  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44962966 ttccatttcatcagtttcttgtcttttactagtttacaccttatgttttacttcgtccttatagtatgcaaatttcaattgtaattcattgtatttcaaa 44963065  T
Q  237 ctcaaattgtgaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaat 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44963066 ctcaaattgtgaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaat 44963165  T
Q  337 caacta 342  Q
    ||||||    
T  44963166 caacta 44963171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 195 - 329
Target Start/End: Complemental strand, 28124962 - 28124826
Alignment:
Q  195 ttatagtatgcaaatttcaattgtaatt-cattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctattaagatagttgga 292  Q
    |||||||||  ||||| |||||||| || ||||||||| | | ||||||||| ||||||| |||||||||||||||||||||||| |||| |||||||||    
T  28124962 ttatagtatataaattccaattgtactttcattgtattccaagctcaaattggtgaatttccccattttgagtttgagggaggctgttaaaatagttgga 28124863  T
Q  293 agttatgtggagttagttaaggtagttagacttgagt 329  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  28124862 agttatgtgtagttagttaaggtagttagactagagt 28124826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 4895468 - 4895570
Alignment:
Q  221 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagtt 319  Q
    ||||||||||| | | ||||||||| ||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||    
T  4895468 ttcattgtattccaagctcaaattggtgattttccccattttgagtttgagggaggctgttaaaatagttggaagttatgtgtagttagttaaggtagtt 4895567  T
Q  320 aga 322  Q
    |||    
T  4895568 aga 4895570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 44962224 - 44962291
Alignment:
Q  275 gctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  44962224 gctattaacatagttggaagttatgtgaagttagttaaggtagttagacttgagtgagtaatcaacta 44962291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 6323957 - 6324058
Alignment:
Q  221 ttcattgtatttcgaactcaaattgtgaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagtta 320  Q
    |||||||||||   ||||||||| ||| |||| |||||||||||||||||| ||  | |||| ||||| | ||||||||||||||||||| || ||||||    
T  6323957 ttcattgtattcgaaactcaaatagtggatttccccattttgagtttgaggtagattgttaaaatagtagaaagttatgtggagttagtttagatagtta 6324056  T
Q  321 ga 322  Q
    ||    
T  6324057 ga 6324058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 20046785 - 20046735
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 329  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  20046785 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagt 20046735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 28126703 - 28126653
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 329  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  28126703 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagt 28126653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 4895654 - 4895691
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4895654 ctcaaactaatctctatatataggaacactattgtact 4895691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 28124749 - 28124712
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28124749 ctcaaactaatctctatatataggaacactattgtact 28124712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 28126576 - 28126539
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28126576 ctcaaactaatctctatatataggaacactattgtact 28126539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 37405611 - 37405574
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37405611 ctcaaactaatctctatatataggaacactattgtact 37405574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 44963233 - 44963270
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    |||||| |||||||||||||||||||||||||||||||    
T  44963233 ctcaaattaatctctatatataggaacactattgtact 44963270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 21631513 - 21631461
Alignment:
Q  230 tttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 281  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| | ||||||    
T  21631513 tttcaaactcaaattggtgaattttcccattttgagtttgagggggactatta 21631461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 20046658 - 20046620
Alignment:
Q  404 ctcaaactaatctct-atatataggaacactattgtact 441  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  20046658 ctcaaactaatctcttatatataggaacactattgtact 20046620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 36989646 - 36989612
Alignment:
Q  277 tattaagatagttggaagttatgtggagttagtta 311  Q
    |||||||||||||||||||||||| ||||||||||    
T  36989646 tattaagatagttggaagttatgtagagttagtta 36989612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 235 - 342
Target Start/End: Complemental strand, 23565006 - 23564898
Alignment:
Q  235 aactcaaattgt-gaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagt 333  Q
    |||||||||||  |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23565006 aactcaaattggcgaatttccccgttttgagtttgagggaggctgttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagt 23564907  T
Q  334 aatcaacta 342  Q
    |||||||||    
T  23564906 aatcaacta 23564898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 195 - 329
Target Start/End: Original strand, 52520458 - 52520594
Alignment:
Q  195 ttatagtatgcaaatttcaattgtaatt-cattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctattaagatagttgga 292  Q
    |||||||||  ||||| |||||||| || ||||||||| | | ||||||||| ||||||| |||||||||||||||||||||||| |||| |||||||||    
T  52520458 ttatagtatataaattccaattgtactttcattgtattccaagctcaaattggtgaatttccccattttgagtttgagggaggctgttaaaatagttgga 52520557  T
Q  293 agttatgtggagttagttaaggtagttagacttgagt 329  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  52520558 agttatgtgtagttagttaaggtagttagactagagt 52520594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 7040306 - 7040369
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7040306 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaacta 7040369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 18656064 - 18656116
Alignment:
Q  290 ggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  18656064 ggaagttatgtgaagttagttaaggtagttagactagagttagtaatcaacta 18656116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 52518702 - 52518752
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 329  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  52518702 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagt 52518752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 3529308 - 3529271
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3529308 ctcaaactaatctctatatataggaacactattgtact 3529271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 7040431 - 7040468
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7040431 ctcaaactaatctctatatataggaacactattgtact 7040468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 23564836 - 23564799
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23564836 ctcaaactaatctctatatataggaacactattgtact 23564799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 23566510 - 23566473
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23566510 ctcaaactaatctctatatataggaacactattgtact 23566473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 52520671 - 52520708
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52520671 ctcaaactaatctctatatataggaacactattgtact 52520708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 54296498 - 54296535
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54296498 ctcaaactaatctctatatataggaacactattgtact 54296535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 23985845 - 23985881
Alignment:
Q  405 tcaaactaatctctatatataggaacactattgtact 441  Q
    |||||||||||||||||||||||||||||||||||||    
T  23985845 tcaaactaatctctatatataggaacactattgtact 23985881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 3274726 - 3274663
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||| ||||||||||||||| || |||||||||||||||| | |||  ||||||||||||||||    
T  3274726 ttaaaatagttggaagttatatgaagttagttaaggtagtaaaactatagttagtaatcaacta 3274663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 18807655 - 18807593
Alignment:
Q  221 ttcattgtatttcgaactcaaatt--gtgaattttcccattttgagtttgagggaggctatta 281  Q
    ||||||||||||| |||||||| |  |||||||||||||||||||||||||||| | ||||||    
T  18807655 ttcattgtatttcaaactcaaaattggtgaattttcccattttgagtttgagggggactatta 18807593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 18656178 - 18656215
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    |||||||||||||||||||||||||| |||||||||||    
T  18656178 ctcaaactaatctctatatataggaaaactattgtact 18656215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 52518829 - 52518866
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    |||||||||||||||||||||||||||||| |||||||    
T  52518829 ctcaaactaatctctatatataggaacactgttgtact 52518866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 23566626 - 23566594
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagtta 311  Q
    |||||||||||| ||||||||||||||||||||    
T  23566626 ttaagatagttgaaagttatgtggagttagtta 23566594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 235 - 339
Target Start/End: Complemental strand, 19645631 - 19645526
Alignment:
Q  235 aactcaaattg-tgaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagt 333  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||    
T  19645631 aactcaaattggtgaatttccccattttgagtttgagggaggctcttaagatagttagaagatatgtggagttagttaaggtagttagactagagttagt 19645532  T
Q  334 aatcaa 339  Q
    ||||||    
T  19645531 aatcaa 19645526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 221 - 329
Target Start/End: Original strand, 5378616 - 5378725
Alignment:
Q  221 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagtt 319  Q
    ||||||||||| | | ||||||||| ||||||| |||||||||||||||||||||||| ||||  ||||||||||||||||| |||||||||||||||||    
T  5378616 ttcattgtattccaatctcaaattggtgaatttccccattttgagtttgagggaggctgttaaattagttggaagttatgtgtagttagttaaggtagtt 5378715  T
Q  320 agacttgagt 329  Q
    ||||| ||||    
T  5378716 agactagagt 5378725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 9414935 - 9415027
Alignment:
Q  250 ttttcccattttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||| ||||||||||||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  9414935 tttttccattttgagtttaagggaggctgttaaaatagttggaagttatgcggagttagttaaggtagttagactagagttagtgatcaacta 9415027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 15149334 - 15149268
Alignment:
Q  276 ctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15149334 ctattaagatagttggaagttatgcggagttagttaaggtagttagacttgagttagtaatcaacta 15149268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 9415031 - 9415107
Alignment:
Q  258 ttttgagtttgagggaggctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagta 334  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  9415031 ttttgagtttaagggaggctgttaaaatagttggaagttatgtggagttagttaaggaagttagactagagttagta 9415107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 15868462 - 15868499
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15868462 ctcaaactaatctctatatataggaacactattgtact 15868499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 33869174 - 33869235
Alignment:
Q  221 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 281  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||||||||| | ||||||    
T  33869174 ttcattgtttttcaaactcaaattggtgaattttcccattttgagtttgagggggactatta 33869235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 1088813 - 1088777
Alignment:
Q  405 tcaaactaatctctatatataggaacactattgtact 441  Q
    |||||||||||||||||||||||||||||||||||||    
T  1088813 tcaaactaatctctatatataggaacactattgtact 1088777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 5376820 - 5376870
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 329  Q
    |||| ||||||||||||||| || |||||||||||||||||||||| ||||    
T  5376820 ttaaaatagttggaagttatatgtagttagttaaggtagttagactagagt 5376870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 15866650 - 15866687
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  15866650 ctcaaactaatctctatatttaggaacactattgtact 15866687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 15868320 - 15868381
Alignment:
Q  221 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 281  Q
    |||||||| |||| ||||||||||| ||||||| ||||||||||||||||||| | ||||||    
T  15868320 ttcattgtttttcaaactcaaattggtgaatttccccattttgagtttgagggggactatta 15868381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 19645461 - 19645424
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    |||||||||||||||||||||| |||||||||||||||    
T  19645461 ctcaaactaatctctatatataagaacactattgtact 19645424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 33866169 - 33866206
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    |||| |||||||||||||||||||||||||||||||||    
T  33866169 ctcagactaatctctatatataggaacactattgtact 33866206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 407 - 440
Target Start/End: Original strand, 33869319 - 33869352
Alignment:
Q  407 aaactaatctctatatataggaacactattgtac 440  Q
    ||||||||||||||||||||||||||||||||||    
T  33869319 aaactaatctctatatataggaacactattgtac 33869352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 5376947 - 5376985
Alignment:
Q  404 ctcaaactaatctct-atatataggaacactattgtact 441  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  5376947 ctcaaactaatctcttatatataggaacactattgtact 5376985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 5378802 - 5378840
Alignment:
Q  404 ctcaaactaatctct-atatataggaacactattgtact 441  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  5378802 ctcaaactaatctcttatatataggaacactattgtact 5378840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 441
Target Start/End: Original strand, 9415141 - 9415175
Alignment:
Q  407 aaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||| |||||||||||||||    
T  9415141 aaactaatctctatatataagaacactattgtact 9415175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 30376227 - 30376265
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtag 317  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  30376227 ttaaaatagttggaagttatgtggagttagttaacgtag 30376265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 14620439 - 14620500
Alignment:
Q  221 ttcattgtatttcgaactcaaatt-gtgaattttcccattttgagtttgagggaggctatta 281  Q
    ||||||||||||| |||||||||| |||||||| |||||||| | |||||||| | ||||||    
T  14620439 ttcattgtatttcaaactcaaattggtgaatttccccattttaaatttgagggggactatta 14620500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 31032287 - 31032222
Alignment:
Q  277 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31032287 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 31032222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 30224175 - 30224238
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30224175 ttaagatagttggaagttatgtggagttagttaaggtagttagactagagttagtaatcaacta 30224238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 3375711 - 3375646
Alignment:
Q  277 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  3375711 tattaagatagttggaagttatgtggagttagttaaggtagttagacttctgttagtaatcaacta 3375646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 5567371 - 5567434
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||| |||| ||||||||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  5567371 ttaaaatagctggaagttatgtgaagttagttaaagtagttagactagagttagtaatcaacta 5567434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 25249076 - 25249113
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25249076 ctcaaactaatctctatatataggaacactattgtact 25249113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 30224300 - 30224337
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30224300 ctcaaactaatctctatatataggaacactattgtact 30224337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 5567727 - 5567676
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagtt 330  Q
    |||| |||| ||||||||||||| |||||||||||||||||||||| |||||    
T  5567727 ttaaaatagctggaagttatgtgaagttagttaaggtagttagactagagtt 5567676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 404 - 439
Target Start/End: Original strand, 6428810 - 6428845
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgta 439  Q
    ||||||||||||||||||||||||||||||||||||    
T  6428810 ctcaaactaatctctatatataggaacactattgta 6428845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 5567496 - 5567533
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    |||||||||||||||||||||||||| |||||||||||    
T  5567496 ctcaaactaatctctatatataggaaaactattgtact 5567533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 3375584 - 3375548
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtac 440  Q
    ||||||||||||||||||||||||||| |||||||||    
T  3375584 ctcaaactaatctctatatataggaactctattgtac 3375548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 6428699 - 6428748
Alignment:
Q  291 gaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||||||||||||||||||  ||||||||||  |||||||||||||||||    
T  6428699 gaagttatgtggagttagtta--gtagttagacaagagttagtaatcaacta 6428748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 25248957 - 25248989
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagtta 311  Q
    |||||||||||||||||||||||||||||||||    
T  25248957 ttaagatagttggaagttatgtggagttagtta 25248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 8759271 - 8759206
Alignment:
Q  277 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8759271 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 8759206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 29758065 - 29758128
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  29758065 ttaagatagttggaagttatgtggagttagttaaggtagttagactagacttagtaatcaacta 29758128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 18776617 - 18776746
Alignment:
Q  158 tcttttactagtttacaccttatgtttt-acttcgtccttatagtatgcaaatttcaattgtaattcattgtatttcgaactcaaatt-gtgaattttcc 255  Q
    |||||||||||||||||||   |||||| | || || ||||||||||||| ||||||||||||||||||| |||| | |||| ||||| ||||||||  |    
T  18776617 tcttttactagtttacaccccttgtttttaattagttcttatagtatgcacatttcaattgtaattcattttattccaaactgaaattggtgaatttctc 18776716  T
Q  256 cattttgagtttgagggaggctattaagat 285  Q
    |||||||||||| ||||||||| |||||||    
T  18776717 cattttgagtttaagggaggctgttaagat 18776746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 31155763 - 31155713
Alignment:
Q  284 atagttggaagttatgtggagttagttaaggtagttagacttgagttagta 334  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||||||||    
T  31155763 atagttggaagttatgcggagttagttaaggtagttaaactagagttagta 31155713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 25306655 - 25306708
Alignment:
Q  221 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgaggga 273  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||    
T  25306655 ttcattgtatttcaaactcaaattggtgaattttcccactttgagtttgaggga 25306708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 29758190 - 29758227
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29758190 ctcaaactaatctctatatataggaacactattgtact 29758227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 20516227 - 20516173
Alignment:
Q  288 ttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||||||||||| |||||||||||||| ||| ||| ||||||||||| |||||    
T  20516227 ttggaagttatgtgcagttagttaaggtaattaaactggagttagtaattaacta 20516173  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 17308534 - 17308586
Alignment:
Q  230 tttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 281  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||| | ||||||    
T  17308534 tttcaaactcaaattggtgaatttccccattttgagtttgagggggactatta 17308586  T

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Target: scaffold0311 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 160 - 263
Target Start/End: Original strand, 14914 - 15018
Alignment:
Q  160 ttttactagtttacaccttatgttttacttcgtccttatagtatgcaaatttcaattgtaattcattgtatttcgaactcaaatt-gtgaattttcccat 258  Q
    ||||||||||||||||| | ||||| |||| || ||| |||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||    
T  14914 ttttactagtttacaccctttgtttgacttagttcttgtagtatgcaaatttcaattgtaattcattgtattccaaactcaaattggtgaatttccccat 15013  T
Q  259 tttga 263  Q
    |||||    
T  15014 tttga 15018  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 1139956 - 1140021
Alignment:
Q  277 tattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  1139956 tattaagatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaacta 1140021  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 6789565 - 6789624
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatca 338  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||    
T  6789565 ttaaaatagttggaagtaatgtgtagttagttaaggtagttagactagagttggtaatca 6789624  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 17403071 - 17403021
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 329  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  17403071 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagt 17403021  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 1140071 - 1140108
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1140071 ctcaaactaatctctatatataggaacactattgtact 1140108  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 6789690 - 6789727
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6789690 ctcaaactaatctctatatataggaatactattgtact 6789727  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 17402944 - 17402906
Alignment:
Q  404 ctcaaactaatctct-atatataggaacactattgtact 441  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  17402944 ctcaaactaatctcttatatataggaacactattgtact 17402906  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 4608927 - 4608988
Alignment:
Q  221 ttcattgtatttcgaactcaaatt-gtgaattttcccattttgagtttgagggaggctatta 281  Q
    ||||| |||| || |||||||||| ||||||||| |||||||||||||||||| | ||||||    
T  4608927 ttcatagtatctcaaactcaaattagtgaatttttccattttgagtttgagggggactatta 4608988  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 17449253 - 17449319
Alignment:
Q  276 ctattaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  17449253 ctattatgatagttggaagttatatggagttagttaaggtagttggacttgagttagtaatcaacta 17449319  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 48940621 - 48940684
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagttagtaatcaacta 342  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  48940621 ttaaaatagttggaagttatgtggagttagttaaggtagttagacaagagttagtaatcaacta 48940684  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 16808867 - 16808817
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggtagttagacttgagt 329  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  16808867 ttaaaatagttggaagttatgtgtagttagttaaggtagttagactagagt 16808817  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 3282871 - 3282908
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3282871 ctcaaactaatctctatatataggaacactattgtact 3282908  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 3284572 - 3284609
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3284572 ctcaaactaatctctatatataggaacactattgtact 3284609  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 9312099 - 9312136
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9312099 ctcaaactaatctctatatataggaacactattgtact 9312136  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 17449381 - 17449418
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17449381 ctcaaactaatctctatatataggaacactattgtact 17449418  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 3284430 - 3284491
Alignment:
Q  221 ttcattgtatttcgaactcaaatt-gtgaattttcccattttgagtttgagggaggctatta 281  Q
    ||||||||||||| |||||||||| |||| |||||||| |||||||||||||| | ||||||    
T  3284430 ttcattgtatttcaaactcaaattggtgagttttcccactttgagtttgagggggactatta 3284491  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 16808740 - 16808703
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    |||||||||||||||||||||| |||||||||||||||    
T  16808740 ctcaaactaatctctatatatatgaacactattgtact 16808703  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 9310482 - 9310519
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  9310482 ctcaaattaatatctatatataggaacactattgtact 9310519  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 51020572 - 51020609
Alignment:
Q  279 ttaagatagttggaagttatgtggagttagttaaggta 316  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  51020572 ttaaaatagttggaagttatgtggagttggttaaggta 51020609  T

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Target: scaffold0251 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 6296 - 6333
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6296 ctcaaactaatctctatatataggaacactattgtact 6333  T

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Target: scaffold0251; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 6158 - 6215
Alignment:
Q  225 ttgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 281  Q
    ||||||||| ||||||||||| ||| ||| ||||||||||||||||||| | ||||||    
T  6158 ttgtatttcaaactcaaattggtgattttccccattttgagtttgagggggactatta 6215  T

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Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 58856 - 58893
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||||||||    
T  58856 ctcaaactaatctctatatataggaacactattgtact 58893  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 4896010 - 4895939
Alignment:
Q  213 aattgtaatt--cattgtatttcgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 281  Q
    ||||||||||  ||||||||||| ||||||||||| ||||||| ||||||||||||||||||| | ||||||    
T  4896010 aattgtaatttccattgtatttcaaactcaaattggtgaatttccccattttgagtttgagggggactatta 4895939  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 39787220 - 39787183
Alignment:
Q  404 ctcaaactaatctctatatataggaacactattgtact 441  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  39787220 ctcaaactaatctctatatataggaacactattttact 39787183  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 33689796 - 33689848
Alignment:
Q  221 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttgaggg 272  Q
    |||||||| |||| ||||||||||| ||||||| |||||||||||||||||||    
T  33689796 ttcattgtgtttcaaactcaaattggtgaatttccccattttgagtttgaggg 33689848  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 25502305 - 25502243
Alignment:
Q  221 ttcattgtattt-cgaactcaaattg-tgaattttcccattttgagtttgagggaggctatta 281  Q
    |||||||||||| | ||||||||||| ||||||| ||||||||||||||||||| | ||||||    
T  25502305 ttcattgtattttcaaactcaaattggtgaatttccccattttgagtttgagggggactatta 25502243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 10412181 - 10412242
Alignment:
Q  221 ttcattgtatttcgaactcaaattgtgaattttc-ccattttgagtttgagggaggctatta 281  Q
    ||||||||||||| |||||||||||  ||||||| | |||||||||||||||| | ||||||    
T  10412181 ttcattgtatttcaaactcaaattggtaattttctcaattttgagtttgagggggactatta 10412242  T

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Target: scaffold0245 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 11027 - 11076
Alignment:
Q  221 ttcattgtatttcgaactcaaattg-tgaattttcccattttgagtttga 269  Q
    ||||| ||||||| ||||||||||| |||||||||||| |||||||||||    
T  11027 ttcatagtatttcaaactcaaattggtgaattttcccactttgagtttga 11076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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