View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4452_high_8 (Length: 382)
Name: NF4452_high_8
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_high_8 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 103 - 375
Target Start/End: Complemental strand, 32184003 - 32183728
Alignment:
| Q |
103 |
gttagcttggttcacatacctaataatccaaacatacaaaatataaatcaaccatagtggaga---gtaaaaataaatagttagctagctagcttggttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||| ||||||||| |||||||||||||||| |
|
|
| T |
32184003 |
gttagcttggttcacatacctaataatccaaacatacaaaatataaatcaaccataatgcagaaaagaaaaaaaaaatagttatctagctagcttggttc |
32183904 |
T |
|
| Q |
200 |
aaccattgcatagcttggttgagttcatcaaccaaagcaataggcagcagaacaagacctttgttttcaagtagctgacatgttgctgctgaatttactt |
299 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32183903 |
aaccattgcatagcctggttcagttcatcaaccaaagcaataggcagcagaacaagacctttgttttcaagtagctgacatgttgctgctgaatttactt |
32183804 |
T |
|
| Q |
300 |
caagtagattccccattatctcttacagaggctcattcaacatctgttcctttatataatgtccataacactgtaa |
375 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||| |
|
|
| T |
32183803 |
caagtagattccccattatctcttcaagaggctcattcaacacctgttcctttatataatgcccataaccctgtaa |
32183728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 32184049 - 32184000
Alignment:
| Q |
9 |
agaaacagtaacacacacgccacctttgagcaccatagattttcaagagtta |
60 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
32184049 |
agaaacagtaacacacac--cacctctgagtaccatagattttcaagagtta |
32184000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 382
Target Start/End: Original strand, 33635647 - 33635764
Alignment:
| Q |
265 |
ttcaagtagctgacatgttgctgctgaatttacttcaagtagattccccattatctcttacagaggctcattcaacatctgttcctttatataatgtcca |
364 |
Q |
| |
|
||||||||||| || || | ||||||||| |||||| | | |||| ||||||||||| |||| |||||||||| | |||||||||||||| || ||| |
|
|
| T |
33635647 |
ttcaagtagctaacttgctactgctgaatgctcttcaaattgtttcctcattatctcttcaagagactcattcaacttttgttcctttatatactgccca |
33635746 |
T |
|
| Q |
365 |
taacactgtaactaaaac |
382 |
Q |
| |
|
|||| |||||| |||||| |
|
|
| T |
33635747 |
taaccctgtaaataaaac |
33635764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University