View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4452_high_9 (Length: 366)
Name: NF4452_high_9
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 60 - 361
Target Start/End: Original strand, 43488410 - 43488710
Alignment:
| Q |
60 |
ggaacgagtatacaaaccatgctccctagacaacatagaattaatcaatacagaattaaaacacttaatgcatgtctgaaatcacgttgagttgatgaaa |
159 |
Q |
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| T |
43488410 |
ggaacgagtatataaaccatgctcc-taaacaacatagaattaatcaatacagaattaaaacacttaatgcatgtctgaaatcacgttgagttgatgaaa |
43488508 |
T |
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| Q |
160 |
tcatggtggtcttaccgtaatattattgaataaaattacggtgactcactgagattctattaaacttaccatcaattcaaacatacggttaacttctatg |
259 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43488509 |
tcatgatggtctcaccgtaatattattgaataaaattacggtgactcgctgagattctattaaacttaccatcaattcaaacatacggttaacttctatg |
43488608 |
T |
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| Q |
260 |
ttataagataagattaattggtgattgtgaaatcattgatatctcttgtaatagcaggaatgcaacttgaacttctagcaagcccaccacctttcttctc |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43488609 |
ttataagataagattaattggtgattgtgaaatcattgatatctcttgtaatagcaggaatgcaacttgaacttctagcaagcccaccacctttcttttc |
43488708 |
T |
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| Q |
360 |
ac |
361 |
Q |
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|| |
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| T |
43488709 |
ac |
43488710 |
T |
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