View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4452_low_10 (Length: 324)
Name: NF4452_low_10
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 26557703 - 26557410
Alignment:
| Q |
17 |
aaaacataatgcacaaaaaggttcgatatttacatactgttgttaagatttttatttcaaacatgcattgnnnnnnnctttctttctaatgtccaggtaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26557703 |
aaaacataatgcacaaaaaggttcgatatttacatactgttgttaagatttttatttcaaacatgcattgtttttttctttctttctaatgtccaggtaa |
26557604 |
T |
|
| Q |
117 |
tcaacctctgataacatcatttaataattttcttttgaaggaatcgttttataaattacttaaaaaagcataaaagtacgcaattatcattccctacata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26557603 |
tcaacctctgataacatcatttaataattttcttttgaaggaatcgttttataaattacttaaaaaagcataaaagtacgcaattatcattccctacata |
26557504 |
T |
|
| Q |
217 |
tctctaacaaacttccctcnnnnnnnnnnnnntatctctaacaaactcattgtaccatgcaataatattcacgaacttcttttaacctacactt |
310 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26557503 |
tctctaacaaacttccctcaaaaaataaaaaatatctctaacaaactcattgtaccatgcaataatattcacgaacttcttttaacctacactt |
26557410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University