View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4452_low_15 (Length: 279)

Name: NF4452_low_15
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4452_low_15
NF4452_low_15
[»] chr7 (5 HSPs)
chr7 (127-268)||(48089611-48089752)
chr7 (26-92)||(48089514-48089580)
chr7 (23-93)||(1692119-1692189)
chr7 (26-93)||(33002993-33003060)
chr7 (120-166)||(1692212-1692258)
[»] chr8 (1 HSPs)
chr8 (20-93)||(18076077-18076151)
[»] chr4 (1 HSPs)
chr4 (120-167)||(4377846-4377893)
[»] chr1 (1 HSPs)
chr1 (122-167)||(10780678-10780723)
[»] chr3 (1 HSPs)
chr3 (37-93)||(7728627-7728683)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 48089611 - 48089752
Alignment:
Q  127 agctatagctccacatggcaccaacgtgcatccgcccctgaggaggacttacacaaaaaatgatcgagggactttgacaacttcactattcactaagacc 226  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48089611 agctatagctccacatggcatcaatgtgcatccgcccttgaggaggacttacacaaaaaatgatcgagggactttgacaacttcactattcactaagacc 48089710  T
Q  227 atccacaagcgtgatttcttcactaatttagcacacattctt 268  Q
    ||||| ||| |||||| |||||||||||||||||||||||||    
T  48089711 atccagaagtgtgattgcttcactaatttagcacacattctt 48089752  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 48089514 - 48089580
Alignment:
Q  26 gactcagggaaaagggaaaaagacagagttatttactgagttactgattttgtgttttattaattat 92  Q
    ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48089514 gactcaggggaaagggaaaaggacatagttatttactgagttactgattttgtgttttattaattat 48089580  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 1692119 - 1692189
Alignment:
Q  23 cgggactcagggaaaagggaaaaagacagagttatttactgagttactgattttgtgttttattaattata 93  Q
    ||||| |||||| ||||||||||||| |||||||||||| |||| |||  ||||||||||||| |||||||    
T  1692119 cgggattcaggggaaagggaaaaagagagagttatttaccgagtcacttcttttgtgttttatcaattata 1692189  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 33003060 - 33002993
Alignment:
Q  26 gactcagggaaaagggaaaaagacagagttatttactgagttactgattttgtgttttattaattata 93  Q
    |||||| || |||||||||| || ||||||||||||||||| |||  ||||||||||||| |||||||    
T  33003060 gactcaagggaaagggaaaaggagagagttatttactgagtcacttcttttgtgttttatcaattata 33002993  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 1692212 - 1692258
Alignment:
Q  120 catgtggagctatagctccacatggcaccaacgtgcatccgcccctg 166  Q
    |||| |||||| ||||||||||| ||||||| |||||||||||||||    
T  1692212 catgcggagctttagctccacatagcaccaatgtgcatccgcccctg 1692258  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 18076077 - 18076151
Alignment:
Q  20 gcgcgggactcagggaaaagggaaaaa-gacagagttatttactgagttactgattttgtgttttattaattata 93  Q
    |||| |||||| ||||||||||||||| || |||||||||||| ||||||||  ||||||||||||| |||||||    
T  18076077 gcgcaggactccgggaaaagggaaaaaagagagagttatttaccgagttacttcttttgtgttttatcaattata 18076151  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 4377846 - 4377893
Alignment:
Q  120 catgtggagctatagctccacatggcaccaacgtgcatccgcccctga 167  Q
    ||||||||||||||||||||||| || ||||| || ||||||||||||    
T  4377846 catgtggagctatagctccacattgccccaacatggatccgcccctga 4377893  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 10780723 - 10780678
Alignment:
Q  122 tgtggagctatagctccacatggcaccaacgtgcatccgcccctga 167  Q
    ||||||||||||||||||||| || ||||| || ||||||||||||    
T  10780723 tgtggagctatagctccacattgccccaacatggatccgcccctga 10780678  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 7728683 - 7728627
Alignment:
Q  37 aagggaaaaagacagagttatttactgagttactgattttgtgttttattaattata 93  Q
    |||||||||||| ||||||||||| ||||| |||  |||| |||||||| |||||||    
T  7728683 aagggaaaaagagagagttatttaatgagtcacttcttttctgttttatcaattata 7728627  T

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