View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4452_low_16 (Length: 278)
Name: NF4452_low_16
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_low_16 |
 | |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 16874139 - 16874382
Alignment:
| Q |
22 |
ggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaagtt |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
16874139 |
ggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctttagctactggaatcagtgtatctaatatctgttatgctattggaagtt |
16874238 |
T |
|
| Q |
122 |
ttcaatattgcagccattattcatgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatccgtgacaaaaaacattcaacggtcc |
221 |
Q |
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|||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16874239 |
ttcaatattgcagccaatgttcctgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatcagtgacaaaaaacattcaacggtcc |
16874338 |
T |
|
| Q |
222 |
tcccgaaaatgttatggaacatgtcatggttgtcacaatgcttc |
265 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
16874339 |
tcccgaaaatgttatggatcatgtcatggttgtcacaatgcttc |
16874382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 16580279 - 16580522
Alignment:
| Q |
22 |
ggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaagtt |
121 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
16580279 |
ggaaaggttgaaatcaagccgacagatgccatatcatatgcacataaatctttagctactggaatcagtgtatctaatatctgttatgctattggaagtt |
16580378 |
T |
|
| Q |
122 |
ttcaatattgcagccattattcatgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatccgtgacaaaaaacattcaacggtcc |
221 |
Q |
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|
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
16580379 |
ttcaatattgcagctaatgttcatgacgtgaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaaaacattcaactgtcc |
16580478 |
T |
|
| Q |
222 |
tcccgaaaatgttatggaacatgtcatggttgtcacaatgcttc |
265 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
16580479 |
tcccgaaaatgttaaggatcatgtcatggttgtcacaatgcttc |
16580522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 16615101 - 16614858
Alignment:
| Q |
22 |
ggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaagtt |
121 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
16615101 |
ggaaaggttgaaatcaagccgacagatgccatatcatatgcacataaatctttagctactggaatcagtgtatctaatatctgttatgctattggaagtt |
16615002 |
T |
|
| Q |
122 |
ttcaatattgcagccattattcatgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatccgtgacaaaaaacattcaacggtcc |
221 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
16615001 |
ttcaatattgcagctaatgttcatgacgtgaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaaaacattcaactgtcc |
16614902 |
T |
|
| Q |
222 |
tcccgaaaatgttatggaacatgtcatggttgtcacaatgcttc |
265 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
16614901 |
tcccgaaaatgttaaggatcatgtcatggttgtcacaatgcttc |
16614858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 16572290 - 16572506
Alignment:
| Q |
19 |
tcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
16572290 |
tcaggaaaggttggaaagaagccgacagatgccatatcgtatgcacataaatctttagctactggaatcagtgtatctaatatctgatatgctattggaa |
16572389 |
T |
|
| Q |
119 |
gttttcaatattgcagccattattcatgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatccgtgacaaaaaacattcaacgg |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| |
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|
| T |
16572390 |
gttttcaatattgcagccaatattcatgacgtgaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaaaaacattcaacgg |
16572489 |
T |
|
| Q |
219 |
tcctcccgaaaatgtta |
235 |
Q |
| |
|
| ||||| ||||||||| |
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|
| T |
16572490 |
ttctcccaaaaatgtta |
16572506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 265
Target Start/End: Complemental strand, 16977692 - 16977493
Alignment:
| Q |
65 |
ataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaagttttcaatattgcagccattattcatgacgtgaagcgtaagatca |
164 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||| |||| |||||||| || ||| || | ||| |||||||| | |||| |||| ||||| |||||||| |
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|
| T |
16977692 |
ataaatcttgagctcctggaatcagtgtatataatatcttctatgctaatgcaag-ttcccataatgcagccaatgttcaagacgcgaagcataagatca |
16977594 |
T |
|
| Q |
165 |
tcagtaagaatttcagccacttgctcgagatccgtgacaaaaaacattcaacggtcctcccgaaaatgttatggaacatgtcatggttgtcacaatgctt |
264 |
Q |
| |
|
||| || ||||||| ||| |||||||| |||| ||| || ||||| ||||| || |||||||||| ||| |||||||||||||| |||| |||| |
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|
| T |
16977593 |
tcaatacgaatttccattgctttttcgagatcagtgataaacaaaattcagcggtctaccagaaaatgttaaggatcatgtcatggttgtaacaaggctt |
16977494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 16691638 - 16691581
Alignment:
| Q |
151 |
gaagcgtaagatcatcagtaagaatttcagccacttgctcgagatccgtgacaaaaaa |
208 |
Q |
| |
|
||||| |||||||||||||||||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
16691638 |
gaagcataagatcatcagtaagaatttccatcgcttgctcgagatcggtgacaaaaaa |
16691581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 21629033 - 21629274
Alignment:
| Q |
19 |
tcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaa |
118 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||||||||||||| |||||||| |||| || |||||||||||||| | |||||||||| |||||||| |
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|
| T |
21629033 |
tcaggaattgttggaaagaagccggctgatgccatatcatatgcatataaatcttgagctccttgaatcagtgtatctcatatctgctatggtattggaa |
21629132 |
T |
|
| Q |
119 |
gttttcaatattgcagccattattcatgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatccgtgacaaaa-aacattcaacg |
217 |
Q |
| |
|
||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||||||| |
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|
| T |
21629133 |
gttcccaatatggcagccaatattcatgacacgaagcgtaagatcatcagtaagaatttccatcgcttgctcgagataagtgacaaaagaacattcaacg |
21629232 |
T |
|
| Q |
218 |
gtcctcccgaaaatgttatggaacatgtcatggttgtcacaa |
259 |
Q |
| |
|
||||||| |||||||||| ||| ||||| |||| |||||||| |
|
|
| T |
21629233 |
gtcctcctgaaaatgttagggatcatgttatggctgtcacaa |
21629274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 233920 - 233679
Alignment:
| Q |
19 |
tcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaa |
118 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| |||||||||||| |||| |||||||||||||| ||||| |
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|
| T |
233920 |
tcaggaaaggttggaaagaagacggcagatgccatatcatatgcatataaatcttgagctcctggaatcagtgcatcttacatctgctatgctgctggaa |
233821 |
T |
|
| Q |
119 |
gttttcaatattgcagccattattcatgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatccgtgacaaa-aaacattcaacg |
217 |
Q |
| |
|
||| || || ||||||| | ||||||| | ||||||||||||||||||||||||||| ||| |||||| ||| || |||| ||| ||||||||| || |
|
|
| T |
233820 |
gttccaaacatggcagccaatgttcatgatgctaagcgtaagatcatcagtaagaatttccgccgcttgcttgaggtcagtgagaaacaaacattcaccg |
233721 |
T |
|
| Q |
218 |
gtcctcccgaaaatgttatggaacatgtcatggttgtcacaa |
259 |
Q |
| |
|
||||||| |||| ||| | ||| ||||| |||| || ||||| |
|
|
| T |
233720 |
gtcctcctgaaactgtcagggatcatgttatggctgccacaa |
233679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 11444 - 11198
Alignment:
| Q |
19 |
tcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaa |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||| | || || | ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
11444 |
tcaggaaaggttggaaagaagcatgcagatgccatatcatatgcatataaatctcgatctcctaggatcagtgtatctagtatctgctatgctactggaa |
11345 |
T |
|
| Q |
119 |
gttttcaatattgcagccattattcatgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatccgtgacaa-aaaacattcaacg |
217 |
Q |
| |
|
||| |||||||||||||| | ||||||| | ||||| ||||||||||||||| |||||| | ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
11344 |
gttcccaatattgcagccaatgttcatgatgcgaagcataagatcatcagtaacaatttccttcgcttgctcgagatcagtgacaaaaaaacattcaacg |
11245 |
T |
|
| Q |
218 |
gtcctcccgaaaatgttatggaacatgtcatggttgtcacaatgcttc |
265 |
Q |
| |
|
||||||| | |||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
11244 |
gtcctcctg-aaatgttaaggatcatgtcatggttgtcacaaggcttc |
11198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 48299036 - 48298795
Alignment:
| Q |
19 |
tcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaa |
118 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| |||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
48299036 |
tcaggaaaggttggaaagaagacggcagatgccatatcatatgcatataaatcttgagctcctggaatcagtgcatcttacatctgctatgctgctggaa |
48298937 |
T |
|
| Q |
119 |
gttttcaatattgcagccattattcatgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatccgtgacaaa-aaacattcaacg |
217 |
Q |
| |
|
||| ||| || ||||||| | ||||||| | ||||||||||||||||||||||||||| ||| |||||| ||| || |||| ||| ||||||||| || |
|
|
| T |
48298936 |
gttcccaacatggcagccaatgttcatgatgctaagcgtaagatcatcagtaagaatttccgccgcttgcttgaggtcagtgagaaacaaacattcaccg |
48298837 |
T |
|
| Q |
218 |
gtcctcccgaaaatgttatggaacatgtcatggttgtcacaa |
259 |
Q |
| |
|
||||||| |||| ||| | ||| ||||| |||| || ||||| |
|
|
| T |
48298836 |
gtcctcctgaaactgtcagggatcatgttatggctgccacaa |
48298795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 7391575 - 7391816
Alignment:
| Q |
19 |
tcaggaaaggttggaaagaagccgacagatgccatatcatatgcacataaatctgtagctactggaatcagtgtatctaacatctgctatgctattggaa |
118 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| |||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
7391575 |
tcaggaaaggttggaaagaagacggcagatgccatatcatatgcatataaatcttgagctcctggaatcagtgcatcttacatctgctatgctgctggaa |
7391674 |
T |
|
| Q |
119 |
gttttcaatattgcagccattattcatgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatccgtgacaaa-aaacattcaacg |
217 |
Q |
| |
|
||| ||| || ||||||| | ||||||| | ||||||||||||||||||||||||||| | | |||||| ||| || | || ||| ||||||||| || |
|
|
| T |
7391675 |
gttcccaacatggcagccaatgttcatgatgcaaagcgtaagatcatcagtaagaatttccgacgcttgcttgaggtcagcgagaaacaaacattcaccg |
7391774 |
T |
|
| Q |
218 |
gtcctcccgaaaatgttatggaacatgtcatggttgtcacaa |
259 |
Q |
| |
|
||||||| |||| ||| | ||| ||||| |||| || ||||| |
|
|
| T |
7391775 |
gtcctcctgaaactgtcagggatcatgttatggctgccacaa |
7391816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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