View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4452_low_18 (Length: 261)
Name: NF4452_low_18
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 9657138 - 9656888
Alignment:
| Q |
1 |
taacctcatcattctcacacagaagaatctccaggcaaatgcgttcggtgcgaacactgtgttcgctccgagaggattcagaaatgaaagatctagttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9657138 |
taacctcatcattctcacacagaagaatctccaggcaaatgtgttcggtgcgaacactgtgttcgctccgagaggattcagaaatgaaagatttagttga |
9657039 |
T |
|
| Q |
101 |
ttacattgattcattgaagaattacgagaaatctggtgttcctactggagcaggcactgattcgaatgatggatttgatctcggtagaatgcgacggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9657038 |
ttacattgattcattgaagaattacgagaaatctggtgttcctactggagcaggcactgattcgaatgatggatttgatctcggtagaatgcgacggtta |
9656939 |
T |
|
| Q |
201 |
ttggatcggtttggtaatcctcactccaaattcaaggttcaaattctcatt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9656938 |
ttggatcggtttggtaatcctcactccaaattcaaggttcaaattctcatt |
9656888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 40688574 - 40688824
Alignment:
| Q |
1 |
taacctcatcattctcacacagaagaatctccaggcaaatgcgttcggtgcgaacactgtgttcgctccgagaggattcagaaatgaaagatctagttga |
100 |
Q |
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||||||||||||||||||| ||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
40688574 |
taacctcatcattctcacagagaggaatcttgaagcaaatgcgttcggtgcgaacactgtgttcgcaccgagaggattcagaaatgaaagatttagttga |
40688673 |
T |
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| Q |
101 |
ttacattgattcattgaagaattacgagaaatctggtgttcctactggagcaggcactgattcgaatgatggatttgatctcggtagaatgcgacggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
40688674 |
ttacattgattcattgaagaattacgagaaatatggtgttcctactggagcaggcactgattcgaatgatggatttgatcttggtagaatgagacggtta |
40688773 |
T |
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| Q |
201 |
ttggatcggtttggtaatcctcactccaaattcaaggttcaaattctcatt |
251 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
40688774 |
ttggatcggtttggtaatcctcactcaaagttcaaggttcaaattctcatt |
40688824 |
T |
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