View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4452_low_19 (Length: 256)

Name: NF4452_low_19
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4452_low_19
NF4452_low_19
[»] chr5 (6 HSPs)
chr5 (82-250)||(38043377-38043545)
chr5 (205-256)||(21657405-21657456)
chr5 (193-248)||(40837918-40837973)
chr5 (194-256)||(11637579-11637641)
chr5 (213-250)||(32622906-32622943)
chr5 (207-248)||(42515812-42515853)
[»] chr4 (9 HSPs)
chr4 (188-256)||(50668326-50668394)
chr4 (194-246)||(8415512-8415564)
chr4 (203-246)||(43020517-43020560)
chr4 (203-249)||(35050556-35050602)
chr4 (195-256)||(36478984-36479045)
chr4 (207-256)||(47704587-47704636)
chr4 (207-256)||(51465342-51465391)
chr4 (196-248)||(897419-897471)
chr4 (207-251)||(30780134-30780178)
[»] chr7 (10 HSPs)
chr7 (203-256)||(24225988-24226041)
chr7 (203-256)||(27279410-27279463)
chr7 (212-256)||(7908603-7908647)
chr7 (193-249)||(21136822-21136878)
chr7 (207-248)||(36428153-36428194)
chr7 (224-256)||(9021046-9021078)
chr7 (203-251)||(10317264-10317312)
chr7 (203-251)||(27263342-27263390)
chr7 (203-251)||(27270236-27270284)
chr7 (220-256)||(30397087-30397123)
[»] chr1 (11 HSPs)
chr1 (203-256)||(4806802-4806855)
chr1 (196-249)||(17188682-17188735)
chr1 (195-251)||(45190281-45190337)
chr1 (213-256)||(2613733-2613776)
chr1 (193-248)||(28219062-28219117)
chr1 (213-256)||(40735012-40735055)
chr1 (207-248)||(16580814-16580855)
chr1 (195-248)||(24529678-24529731)
chr1 (207-256)||(28460254-28460303)
chr1 (220-256)||(6491844-6491880)
chr1 (208-248)||(7803411-7803451)
[»] chr8 (5 HSPs)
chr8 (200-256)||(37141355-37141411)
chr8 (207-256)||(21557438-21557487)
chr8 (203-247)||(5830313-5830357)
chr8 (224-256)||(17641867-17641899)
chr8 (221-249)||(20700189-20700217)
[»] chr6 (4 HSPs)
chr6 (203-251)||(9244121-9244169)
chr6 (203-249)||(10497166-10497212)
chr6 (202-256)||(15062291-15062345)
chr6 (193-249)||(23507405-23507461)
[»] chr2 (6 HSPs)
chr2 (220-256)||(14735900-14735936)
chr2 (207-251)||(19189856-19189900)
chr2 (200-249)||(11817359-11817409)
chr2 (220-253)||(33067101-33067134)
chr2 (207-248)||(35404570-35404611)
chr2 (203-251)||(31837948-31837996)
[»] chr3 (7 HSPs)
chr3 (195-250)||(7757076-7757131)
chr3 (200-251)||(53221956-53222007)
chr3 (203-256)||(1743997-1744050)
chr3 (212-249)||(19126691-19126728)
chr3 (203-251)||(34325995-34326043)
chr3 (200-248)||(40520750-40520798)
chr3 (213-253)||(42269309-42269349)
[»] scaffold0021 (1 HSPs)
scaffold0021 (207-256)||(161146-161195)
[»] scaffold1160 (1 HSPs)
scaffold1160 (208-256)||(1719-1767)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 38043377 - 38043545
Alignment:
Q  82 cacattatccattttaaaatggaaaatgcaataaaaactggcgcaataaaccaaaatatccattttaaaggaatcaattttgggttttatgcactattaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38043377 cacattatccattttaaaatggaaaatgcaataaaaactggcgcaataaaccataatatccattttaaaggaatcaattttgggttttatgcactattaa 38043476  T
Q  182 taaacgatttctatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttc 250  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  38043477 taaacgatttctatgtcttcgtgaacttaattcagtttgtatggataatgcataaaatatgtaaggttc 38043545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 21657456 - 21657405
Alignment:
Q  205 aacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||||| ||||||||||| |||||||| |||| |||||||||||| ||||||    
T  21657456 aacttagttcagtttgtagggacaatgcataatatatgtaaggtttgaggtt 21657405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 40837973 - 40837918
Alignment:
Q  193 tatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggt 248  Q
    |||||| || ||||||||| |||||| ||||||||||| ||||||||||| |||||    
T  40837973 tatgtcctcgtgaacttaactcagttggtatggacaatatataaaatatgcaaggt 40837918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 11637641 - 11637579
Alignment:
Q  194 atgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    ||||| || ||| ||||| |||||| |||||||||||| |||||||||| |||||||| ||||    
T  11637641 atgtcctcgtgagcttaactcagttggtatggacaatgcataaaatatgcaaggttcggggtt 11637579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 32622906 - 32622943
Alignment:
Q  213 tcagtttgtatggacaatgtataaaatatgtaaggttc 250  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  32622906 tcagttggtatggacaatgtataaaatatgcaaggttc 32622943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 42515812 - 42515853
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggt 248  Q
    |||||||||||| |||||||||||| |||| |||||||||||    
T  42515812 cttaattcagttggtatggacaatgcataatatatgtaaggt 42515853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 50668326 - 50668394
Alignment:
Q  188 atttctatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||| ||||||||| |||||||||||||||| ||||| |||||  |||| |||||||||||||| ||||    
T  50668326 atttttatgtcttcgtgaacttaattcagttggtatgaacaatacataatatatgtaaggttcggggtt 50668394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 8415564 - 8415512
Alignment:
Q  194 atgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaag 246  Q
    ||||| |||||| |||||||||||| |||||||||||| |||| |||||||||    
T  8415564 atgtcctcatgagcttaattcagttggtatggacaatgcataatatatgtaag 8415512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 43020517 - 43020560
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaag 246  Q
    |||||||| ||||||| | |||||||||||||||||||||||||    
T  43020517 tgaacttagttcagttgggatggacaatgtataaaatatgtaag 43020560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 35050602 - 35050556
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggtt 249  Q
    |||||||||||||||| ||||| ||||| ||||| ||||||||||||    
T  35050602 tgaacttaattcagttggtatgtacaatttataatatatgtaaggtt 35050556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 36478984 - 36479045
Alignment:
Q  195 tgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||| |||||| ||||  || ||| |||||||||||| |||| |||||||||||||||||||    
T  36478984 tgtcctcatgagcttagctctgttggtatggacaatgcataatatatgtaaggttcgaggtt 36479045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 47704587 - 47704636
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    ||||| |||||| ||||| | ||||||||| |||||||||||||||||||    
T  47704587 cttaactcagttggtatgaataatgtataatatatgtaaggttcgaggtt 47704636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 51465342 - 51465391
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||||||||||| |||||||||||| |||| |||||||||| ||| ||||    
T  51465342 cttaattcagttggtatggacaatgcataatatatgtaagggtcggggtt 51465391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 897419 - 897471
Alignment:
Q  196 gtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggt 248  Q
    ||||||||||  |||  |||||| ||||||||||||||||| |||||||||||    
T  897419 gtcttcatgagtttagctcagttggtatggacaatgtataatatatgtaaggt 897471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 30780134 - 30780178
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 251  Q
    ||||| |||||| |||||||||||| ||||||||| |||||||||    
T  30780134 cttaactcagttggtatggacaatgcataaaatatataaggttcg 30780178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 24226041 - 24225988
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    ||||||||  |||||| |||||||||||| |||||||||||||||| |||||||    
T  24226041 tgaacttagctcagttcgtatggacaatgcataaaatatgtaaggtccgaggtt 24225988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 27279463 - 27279410
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||||||| ||||||| |||| |||||||||||| |||||||||||| ||||||    
T  27279463 tgaacttagttcagttagtatagacaatgtataatatatgtaaggtttgaggtt 27279410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 7908603 - 7908647
Alignment:
Q  212 ttcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||||    
T  7908603 ttcagttggtatggacaatgcataaaatatgtaaggttcggggtt 7908647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 21136822 - 21136878
Alignment:
Q  193 tatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggtt 249  Q
    ||||||||| ||| ||||| |||||| ||||||||||||||||| ||||| ||||||    
T  21136822 tatgtcttcgtgagcttaactcagttggtatggacaatgtataatatatgcaaggtt 21136878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 36428153 - 36428194
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggt 248  Q
    ||||| |||||| ||||||||||||||||||||||| |||||    
T  36428153 cttaactcagttggtatggacaatgtataaaatatgcaaggt 36428194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 9021078 - 9021046
Alignment:
Q  224 ggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    ||||||||||||||||||||||||| |||||||    
T  9021078 ggacaatgtataaaatatgtaaggtccgaggtt 9021046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 10317264 - 10317312
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 251  Q
    ||||||||| ||||||  ||||||||| | |||||||||||||||||||    
T  10317264 tgaacttaactcagttaatatggacaaggcataaaatatgtaaggttcg 10317312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 27263342 - 27263390
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 251  Q
    ||||||||| |||||| |||||||||||| |||| ||||| ||||||||    
T  27263342 tgaacttaactcagttggtatggacaatgcataatatatgcaaggttcg 27263390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 27270236 - 27270284
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 251  Q
    ||||||||| |||||| |||||||||||| |||| ||||| ||||||||    
T  27270236 tgaacttaactcagttggtatggacaatgcataatatatgcaaggttcg 27270284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 30397087 - 30397123
Alignment:
Q  220 gtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  30397087 gtatggacaatgcataaaatatgtaaggttcggggtt 30397123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 4806855 - 4806802
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||||||||||||||| |||  |||||||||||| |||||||||||| ||||||    
T  4806855 tgaacttaattcagttggtagagacaatgtataatatatgtaaggtttgaggtt 4806802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 17188735 - 17188682
Alignment:
Q  196 gtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggtt 249  Q
    |||||||||| ||||  |||||| |||||||||||| |||||||||||||||||    
T  17188735 gtcttcatgagcttagctcagttggtatggacaatgcataaaatatgtaaggtt 17188682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 45190337 - 45190281
Alignment:
Q  195 tgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 251  Q
    ||||||| |||||||| ||||||| |||||||||||| |||| ||||| ||||||||    
T  45190337 tgtcttcgtgaacttagttcagttggtatggacaatgcataatatatgcaaggttcg 45190281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 2613733 - 2613776
Alignment:
Q  213 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||    
T  2613733 tcagttggtatggacaatgcataaaatatgtaaggttcggggtt 2613776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 28219117 - 28219062
Alignment:
Q  193 tatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggt 248  Q
    ||||||||| ||||||||||||| ||  || ||||||||||||| |||||||||||    
T  28219117 tatgtcttcttgaacttaattcaattgatagggacaatgtataatatatgtaaggt 28219062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 40735055 - 40735012
Alignment:
Q  213 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||    
T  40735055 tcagttagtatggacaatgcataaaatatgtaaggttcggggtt 40735012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 16580855 - 16580814
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggt 248  Q
    |||||||||||| ||||||||||||||||| ||||| |||||    
T  16580855 cttaattcagttggtatggacaatgtataatatatgcaaggt 16580814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 24529678 - 24529731
Alignment:
Q  195 tgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggt 248  Q
    |||| |||||| ||||| |||||| ||||||||| || ||||||||||||||||    
T  24529678 tgtcctcatgagcttaactcagttagtatggacattgcataaaatatgtaaggt 24529731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 28460254 - 28460303
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||| ||||||| ||||| ||||||||||||||||| |||||| ||||||    
T  28460254 cttagttcagttcgtatgaacaatgtataaaatatggaaggtttgaggtt 28460303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 6491880 - 6491844
Alignment:
Q  220 gtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  6491880 gtatggacaatgtataatatatgtaaggttcggggtt 6491844  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 7803411 - 7803451
Alignment:
Q  208 ttaattcagtttgtatggacaatgtataaaatatgtaaggt 248  Q
    |||| |||||||||||||||||||||||| ||||| |||||    
T  7803411 ttaactcagtttgtatggacaatgtataatatatgcaaggt 7803451  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 37141355 - 37141411
Alignment:
Q  200 tcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||| |||||||||||||| |||||||||||| |||| ||||| |||||||| ||||    
T  37141355 tcataaacttaattcagttggtatggacaatgcataatatatgcaaggttcggggtt 37141411  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 21557438 - 21557487
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    ||||| |||||| |||||||||||| |||| ||||||||||| |||||||    
T  21557438 cttaactcagttagtatggacaatgcataatatatgtaaggtccgaggtt 21557487  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 5830357 - 5830313
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaagg 247  Q
    ||||||||||| |||| ||||| ||||||||||| ||||||||||    
T  5830357 tgaacttaatttagttggtatgaacaatgtataatatatgtaagg 5830313  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 17641899 - 17641867
Alignment:
Q  224 ggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    ||||||||||||||||||| |||||||||||||    
T  17641899 ggacaatgtataaaatatgcaaggttcgaggtt 17641867  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 20700189 - 20700217
Alignment:
Q  221 tatggacaatgtataaaatatgtaaggtt 249  Q
    |||||||||||||||||||||||||||||    
T  20700189 tatggacaatgtataaaatatgtaaggtt 20700217  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 9244169 - 9244121
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 251  Q
    ||||||||| |||||| ||||| |||||| |||||||||||||||||||    
T  9244169 tgaacttaactcagttggtatgaacaatgaataaaatatgtaaggttcg 9244121  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 10497212 - 10497166
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggtt 249  Q
    ||||||||| |||||||||| |||||||| |||| ||||||||||||    
T  10497212 tgaacttaactcagtttgtaaggacaatgcataatatatgtaaggtt 10497166  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 15062291 - 15062345
Alignment:
Q  202 atgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    ||||||||| ||||||| ||| | |||||| ||||||||||||||||||| ||||    
T  15062291 atgaacttagttcagttggtaagtacaatgcataaaatatgtaaggttcggggtt 15062345  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 23507461 - 23507405
Alignment:
Q  193 tatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggtt 249  Q
    |||||| || |||||||| ||||||| ||| |||||||  |||||||||||||||||    
T  23507461 tatgtcctcgtgaacttagttcagttggtaaggacaatacataaaatatgtaaggtt 23507405  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 14735936 - 14735900
Alignment:
Q  220 gtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||||||||||| ||||||||||||||||||||||||    
T  14735936 gtatggacaatgcataaaatatgtaaggttcgaggtt 14735900  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 19189900 - 19189856
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 251  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||    
T  19189900 cttaactcagttagtatggacaatgtataaaatatgcaaggttcg 19189856  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 11817409 - 11817359
Alignment:
Q  200 tcatgaacttaattcagtttgtatggacaatgtataa-aatatgtaaggtt 249  Q
    |||||| ||||| |||||| ||||||||||||||||| |||||||||||||    
T  11817409 tcatgagcttaactcagttggtatggacaatgtataataatatgtaaggtt 11817359  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 33067101 - 33067134
Alignment:
Q  220 gtatggacaatgtataaaatatgtaaggttcgag 253  Q
    ||||||| ||||||||||||||||||||||||||    
T  33067101 gtatggataatgtataaaatatgtaaggttcgag 33067134  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 35404611 - 35404570
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggt 248  Q
    |||| ||||||| ||||| |||||||||||||||||||||||    
T  35404611 cttagttcagttggtatgaacaatgtataaaatatgtaaggt 35404570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 31837996 - 31837948
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 251  Q
    ||||||||| ||| || ||||||| ||||||||| ||||||||||||||    
T  31837996 tgaacttaactcaattggtatggataatgtataatatatgtaaggttcg 31837948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 7757076 - 7757131
Alignment:
Q  195 tgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttc 250  Q
    |||| |||||| |||| ||||||| ||||||||||| ||||||||||| |||||||    
T  7757076 tgtcctcatgagcttagttcagttggtatggacaatatataaaatatgcaaggttc 7757131  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 53221956 - 53222007
Alignment:
Q  200 tcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 251  Q
    |||||||||||| ||||||  || ||||||||||||| ||||||||||||||    
T  53221956 tcatgaacttaactcagttgataaggacaatgtataatatatgtaaggttcg 53222007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 1744050 - 1743997
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||||||||||||||| |||||||||||  |||| ||||| |||||||| ||||    
T  1744050 tgaacttaattcagttggtatggacaatacataatatatgcaaggttcggggtt 1743997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 19126728 - 19126691
Alignment:
Q  212 ttcagtttgtatggacaatgtataaaatatgtaaggtt 249  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  19126728 ttcagttggtatggacaatgcataaaatatgtaaggtt 19126691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 34326043 - 34325995
Alignment:
Q  203 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 251  Q
    |||||||||||||||| |||||||||||| |||| ||||| || |||||    
T  34326043 tgaacttaattcagttggtatggacaatgcataatatatgcaatgttcg 34325995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 40520750 - 40520798
Alignment:
Q  200 tcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggt 248  Q
    |||||| ||||| |||||||||||||| |||| |||||||||| |||||    
T  40520750 tcatgagcttaactcagtttgtatggataatgcataaaatatgcaaggt 40520798  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 42269309 - 42269349
Alignment:
Q  213 tcagtttgtatggacaatgtataaaatatgtaaggttcgag 253  Q
    |||||| |||||||||||| |||| ||||||||||||||||    
T  42269309 tcagttagtatggacaatgcataatatatgtaaggttcgag 42269349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 161146 - 161195
Alignment:
Q  207 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    ||||| |||||| |||||||||||| |||||||||| |||||||| ||||    
T  161146 cttaactcagttggtatggacaatgcataaaatatgcaaggttcggggtt 161195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 1767 - 1719
Alignment:
Q  208 ttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 256  Q
    |||| |||||| ||| |||||||| |||||||||| |||||||||||||    
T  1767 ttaactcagttggtagggacaatgcataaaatatgcaaggttcgaggtt 1719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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