View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4452_low_21 (Length: 240)
Name: NF4452_low_21
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 53791636 - 53791835
Alignment:
| Q |
23 |
agaaaagctacttagttttgtatatagtatagagtagatataatgttagttttgtatgcatacgaaacgaacaaatgagttatttgactttatttattta |
122 |
Q |
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| T |
53791636 |
agaaaagctacttagttttgtatatagtatagagtagatataatgttagttttgtatgcatacaaaacgaacaaatgagttatttgactttatttattta |
53791735 |
T |
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| Q |
123 |
actccaatgttgtacacgttgcacatgtttgtctcacgggtgc-ttagtttttcagtagtaagctgaactgtgaaaccaaaccaatcatcaaccatgtct |
221 |
Q |
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| T |
53791736 |
actccaatgttgtacacgttgcacatgtttgtctcacgggtgctttagtttttc---agtaagctgaactgtgaaaccaaaccaatcatcaaccatgtct |
53791832 |
T |
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