View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4452_low_22 (Length: 238)
Name: NF4452_low_22
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4452_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 32183342 - 32183562
Alignment:
| Q |
18 |
gcaggaactaagtggaagtaaattgcaagctgattcaaattctataccactagttttccatgaggtacacatcttcccttaatttcagtagatatattat |
117 |
Q |
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| T |
32183342 |
gcaggaactaagtggaagtaaattgcaagctgattcaaattctataccactagttttccatgaggtacacatcttcccttaatttcagtagatatattat |
32183441 |
T |
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| Q |
118 |
atattgcatcactgtgaatttgtgtgcttgcccaaattctgctccatgcaaataatgtcttgagtattttcatagttacagatatgttgttatttgtaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183442 |
atattgcatcactgtgaatttgtgtgcttgcccaaattctgctccatgcaaataatttcttgagtattttcatagttacagatatgttgttatttgtaca |
32183541 |
T |
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| Q |
218 |
gttcataggaaatgttctaat |
238 |
Q |
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||||||||||||||||||||| |
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| T |
32183542 |
gttcataggaaatgttctaat |
32183562 |
T |
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