View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4452_low_7 (Length: 424)

Name: NF4452_low_7
Description: NF4452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4452_low_7
NF4452_low_7
[»] chr3 (8 HSPs)
chr3 (53-393)||(42250632-42250972)
chr3 (171-322)||(31779564-31779715)
chr3 (145-227)||(14427217-14427298)
chr3 (153-205)||(2120515-2120567)
chr3 (145-249)||(13291683-13291786)
chr3 (261-320)||(5798278-5798337)
chr3 (178-249)||(19905736-19905806)
chr3 (109-245)||(20648730-20648867)
[»] chr5 (9 HSPs)
chr5 (110-327)||(19903467-19903684)
chr5 (127-317)||(37390188-37390378)
chr5 (131-249)||(26335542-26335659)
chr5 (184-288)||(16791189-16791293)
chr5 (145-205)||(22186070-22186130)
chr5 (178-296)||(18325461-18325578)
chr5 (208-296)||(6037940-6038027)
chr5 (151-203)||(17241670-17241722)
chr5 (145-197)||(26013780-26013832)
[»] chr8 (7 HSPs)
chr8 (61-322)||(34062244-34062504)
chr8 (179-311)||(33925546-33925678)
chr8 (125-294)||(17872335-17872504)
chr8 (179-294)||(12012395-12012509)
chr8 (131-250)||(26576617-26576735)
chr8 (171-286)||(6589415-6589530)
chr8 (145-205)||(23584908-23584968)
[»] chr4 (11 HSPs)
chr4 (61-326)||(13977214-13977480)
chr4 (178-320)||(12236156-12236298)
chr4 (202-326)||(27940814-27940937)
chr4 (145-292)||(12191080-12191226)
chr4 (172-294)||(23865971-23866093)
chr4 (193-242)||(11779872-11779921)
chr4 (145-226)||(17743585-17743666)
chr4 (152-204)||(9883408-9883460)
chr4 (128-201)||(5984521-5984594)
chr4 (148-249)||(11545216-11545316)
chr4 (112-204)||(13929062-13929155)
[»] chr1 (10 HSPs)
chr1 (122-327)||(29076817-29077022)
chr1 (64-326)||(11105254-11105515)
chr1 (147-290)||(19960263-19960404)
chr1 (153-274)||(20619698-20619819)
chr1 (145-249)||(22666270-22666374)
chr1 (173-294)||(35896036-35896157)
chr1 (184-249)||(17103360-17103424)
chr1 (145-214)||(17316391-17316460)
chr1 (153-205)||(12669098-12669150)
chr1 (145-197)||(30805835-30805887)
[»] scaffold0217 (1 HSPs)
scaffold0217 (178-293)||(6909-7024)
[»] chr6 (3 HSPs)
chr6 (151-294)||(19691923-19692066)
chr6 (172-314)||(23601028-23601170)
chr6 (145-204)||(21747105-21747164)
[»] chr2 (4 HSPs)
chr2 (145-326)||(13112394-13112575)
chr2 (172-319)||(26704488-26704635)
chr2 (143-205)||(25563999-25564061)
chr2 (132-249)||(42256288-42256404)
[»] scaffold0010 (1 HSPs)
scaffold0010 (112-292)||(137004-137185)
[»] chr7 (8 HSPs)
chr7 (127-285)||(28981163-28981317)
chr7 (193-293)||(11609157-11609257)
chr7 (145-205)||(26822370-26822430)
chr7 (145-249)||(1783011-1783114)
chr7 (338-394)||(14054374-14054430)
chr7 (338-394)||(14364402-14364458)
chr7 (145-204)||(27707316-27707375)
chr7 (178-245)||(32957606-32957672)
[»] scaffold0514 (1 HSPs)
scaffold0514 (148-327)||(7158-7337)
[»] scaffold1190 (1 HSPs)
scaffold1190 (148-286)||(1225-1363)
[»] scaffold0329 (1 HSPs)
scaffold0329 (153-290)||(4286-4421)
[»] scaffold0650 (1 HSPs)
scaffold0650 (148-249)||(5897-5997)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 53 - 393
Target Start/End: Original strand, 42250632 - 42250972
Alignment:
Q  53 taaagactctcagactttgaaggccacgtcagcatcagaggtctttggctagtttggtcgtcttccgatggaaggtcactatcagacactagtagtacaa 152  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42250632 taaagactctcagactttgaaggccacgtcagcatcaaaggtttttggctagtttggtcgtcttctgatggaaggtcactatcagacactagtagtacaa 42250731  T
Q  153 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataat 252  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  42250732 tttgtcttcttctcaccccgtgcaaaaacaaataaagaacttcaaagacaaatggaatgaaacagataattccaattgaagcaaagaaatttcaaataat 42250831  T
Q  253 ttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatgttctctctctaagatgcttttaacgt 352  Q
    ||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42250832 ttttcaacgacattaaccaaatcaaaagacattccaacgtctctcatcgagattctcaaggactcaaatttatgttctctctctaagatgcttttaacgt 42250931  T
Q  353 ggtcttggcgctgaatgttcaccaacaatctctcacctatg 393  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42250932 ggtcttggcgctgaatgttcaccaacaatctctcacctatg 42250972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 322
Target Start/End: Complemental strand, 31779715 - 31779564
Alignment:
Q  171 cgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacc 270  Q
    |||||| |||||||||||||||||||||||||||  |||| |||| |||||||||  |  | |||||| |||||||||  |  |||||  ||||||||||    
T  31779715 cgtgcagaaacaaacaaagaacttcaaagacaaataaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaacc 31779616  T
Q  271 aaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatt 322  Q
    ||||||  | ||||| |||||||||| ||| || |||| ||||| |||||||    
T  31779615 aaatcataaaacatttcaacgtctctgatcaagcttcttaaggagtcaaatt 31779564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 14427217 - 14427298
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaa 227  Q
    |||||||||||||||| |||| ||  |||| | |||||||||||||||||||| |||| ||  |||| |||||||||||||||    
T  14427217 tagtacaatttgtctttttctaaccacgtgtataaacaaacaaagaacttcaaggacatagagaatg-aacagataattccaa 14427298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 2120515 - 2120567
Alignment:
Q  153 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 205  Q
    ||||||||||| | || |||| ||||||||||||||||||||||| |||||||    
T  2120515 tttgtcttcttttgaccccgtacaaaaacaaacaaagaacttcaatgacaaag 2120567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 13291683 - 13291786
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 244  Q
    ||||||||||||||||||||| ||  |||| | |||||||||||||||| ||| ||||||   |||| ||| ||||||| || ||  | |||||||||||    
T  13291683 tagtacaatttgtcttcttctgaccacgtgtagaaacaaacaaagaactccaaggacaaaaagaatg-aacggataatttcagtttcaacaaagaaattt 13291781  T
Q  245 caaat 249  Q
    |||||    
T  13291782 caaat 13291786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 5798278 - 5798337
Alignment:
Q  261 gacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaa 320  Q
    ||||||||||||||||||| ||||||||| |||| | ||  || ||||||||||||||||    
T  5798278 gacattaaccaaatcaagaaacattccaatgtctatgattaagcttctcaaggactcaaa 5798337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 19905806 - 19905736
Alignment:
Q  178 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaat 249  Q
    ||||||| ||||||||||||||||||||  |||| |||| ||| ||||| | | ||||||||||||||||||    
T  19905806 aaacaaataaagaacttcaaagacaaagagaatg-aacaaatagttccagtcgcagcaaagaaatttcaaat 19905736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 245
Target Start/End: Complemental strand, 20648867 - 20648730
Alignment:
Q  109 gtcgtcttccgatggaaggtcactatcagacact-agtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaagga 207  Q
    ||||||||| || | ||||||| |||||||| |  ||||||| ||||||| ||||||| ||  ||| |||| |||||||||||| |||||| |  |||      
T  20648867 gtcgtcttctgaagaaaggtcattatcagactcagagtagtataatttgtattcttctgaccacgtacaaatacaaacaaagaaattcaaatatcaagag 20648768  T
Q  208 aatgaaacagataattccaattgaagcaaagaaatttc 245  Q
    |||| |||| || |||| | || |||||||||||||||    
T  20648767 aatgtaacaaatcattctatttaaagcaaagaaatttc 20648730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 110 - 327
Target Start/End: Complemental strand, 19903684 - 19903467
Alignment:
Q  110 tcgtcttccgatggaaggtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaa 209  Q
    |||||||| ||||||||||||||||||||| ||  | | |||||||||  |||||| ||  |||||  ||| ||||||||||||| || |||||||| ||    
T  19903684 tcgtcttctgatggaaggtcactatcagactctgatcgcacaatttgttatcttctgaccacgtgctgaaataaacaaagaactttaaggacaaaggcaa 19903585  T
Q  210 tgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctc 309  Q
    ||||||| |||||| |||||||||||||| |||||||||| |  ||||| |||||||||||||||||| | ||||||| |||||||| ||| || ||||     
T  19903584 tgaaacatataatttcaattgaagcaaaggaatttcaaatgaactttcaatgacattaaccaaatcaataaacattcccacgtctctaatcaagcttcta 19903485  T
Q  310 aaggactcaaatttatgt 327  Q
    ||||||||||||||||||    
T  19903484 aaggactcaaatttatgt 19903467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 317
Target Start/End: Complemental strand, 37390378 - 37390188
Alignment:
Q  127 gtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattcca 226  Q
    |||||||||||||  |  ||||||| ||| ||||||||| ||  | |||| |||||||||||||||||||| || ||  | ||||||||||||||||||     
T  37390378 gtcactatcagactttgatagtacattttatcttcttctgaccacatgcagaaacaaacaaagaacttcaaggataattggaatgaaacagataattcct 37390279  T
Q  227 attgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactc 317  Q
     || |||||||| ||||||||||   ||||||  || ||||||| |||| ||| |||||||||||||| | ||| || ||||||| |||||    
T  37390278 tttcaagcaaaggaatttcaaatgtcttttcaacgatattaaccgaatcgagaaacattccaacgtctatgatcaagcttctcaaagactc 37390188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 26335542 - 26335659
Alignment:
Q  131 ctatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattg 230  Q
    ||||||||| ||  |||||||||||||| |||||| ||   ||||| | ||||| ||||||| |||| |||||| |||||| ||| |||||||||| |||    
T  26335542 ctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccagttg 26335640  T
Q  231 aagcaaagaaatttcaaat 249  Q
     ||||||| ||||||||||    
T  26335641 cagcaaaggaatttcaaat 26335659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 16791293 - 16791189
Alignment:
Q  184 acaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagaca 283  Q
    |||| ||||||||| |||||  | ||||||||| | |||| |  ||||||||||| ||||| |||||  ||||||  ||||||||||||||||||| |||    
T  16791293 acaatgaacttcaaggacaattggaatgaaacatacaatttcttttgaagcaaaggaattttaaatatcttttcaacgacattaaccaaatcaagaaaca 16791194  T
Q  284 ttcca 288  Q
    |||||    
T  16791193 ttcca 16791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 22186130 - 22186070
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 205  Q
    ||||||||||||||||||||| ||  |||||| |||||||||||| | |||||||||||||    
T  22186130 tagtacaatttgtcttcttctgacaacgtgcagaaacaaacaaaggaattcaaagacaaag 22186070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 18325461 - 18325578
Alignment:
Q  178 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaa 277  Q
    |||||||||||||||||||  |||||  | ||||||||| ||||||||  ||||||||||| |||| ||||  |  |||||   |||||||||| | |||    
T  18325461 aaacaaacaaagaacttcagggacaattggaatgaaacacataattccttttgaagcaaaggaattccaaaagaactttcaacaacattaaccataccaa 18325560  T
Q  278 gagacattccaacgtctct 296  Q
    || ||||||||||||||||    
T  18325561 ga-acattccaacgtctct 18325578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 6038027 - 6037940
Alignment:
Q  208 aatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctct 296  Q
    |||||||||||||||||||| |||||||||| |||||  ||||   |||||  | ||||||| ||||||||| | ||||||||||||||    
T  6038027 aatgaaacagataattccaaatgaagcaaaggaattt-gaatacgctttcaacgtcattaactaaatcaagaaatattccaacgtctct 6037940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 17241722 - 17241670
Alignment:
Q  151 aatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaa 203  Q
    ||||||||||||||| ||   |||||||||||||||||||| ||| |||||||    
T  17241722 aatttgtcttcttctaacaatgtgcaaaaacaaacaaagaaattcgaagacaa 17241670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 26013832 - 26013780
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaa 197  Q
    ||||||||||||||||||||| ||   ||| | ||||||||||||||||||||    
T  26013832 tagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaagaacttcaa 26013780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 322
Target Start/End: Original strand, 34062244 - 34062504
Alignment:
Q  61 ctcagactttgaaggccacgtcagcatcagaggtctttggctagtttggtcgtcttccgatggaaggtcactatcagacactagtagtacaatttgtctt 160  Q
    |||||||| | ||||||||||| |||||||| | ||||| || |||| || |||||  |||||||  ||||| ||| || ||| ||||||||||||||||    
T  34062244 ctcagactctaaaggccacgtcggcatcagaagcctttgactggttttgtagtcttatgatggaatatcactgtcaaactctaatagtacaatttgtctt 34062343  T
Q  161 cttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcatt 260  Q
    ||| | ||  |||||| |||||||||||||||||||||| ||   | ||||||||| |||||| |  |||||||||| ||||||||||| |  ||| |      
T  34062344 cttgtgaccacgtgcagaaacaaacaaagaacttcaaaggcagttggaatgaaacaaataatt-cttttgaagcaaataaatttcaaatgaccttttaaa 34062442  T
Q  261 gacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatt 322  Q
    ||||||||||||||||||| |||||| || |||| | |   || ||||||||||||||||||    
T  34062443 gacattaaccaaatcaagaaacattcaaatgtctttgacgaagtttctcaaggactcaaatt 34062504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 179 - 311
Target Start/End: Original strand, 33925546 - 33925678
Alignment:
Q  179 aacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaag 278  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||   |||||||||||||||||||||||  ||||||  ||||||||||||||||||    
T  33925546 aacaaacaaagaacttcaaagacaaatgaaatgaaatggataattcattttgaagcaaagaaatttcaaatatcttttcaacgacattaaccaaatcaag 33925645  T
Q  279 agacattccaacgtctctcatcgagattctcaa 311  Q
    | |||||| || |||| | ||| || |||||||    
T  33925646 aaacattctaatgtctatgatcaagcttctcaa 33925678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 294
Target Start/End: Original strand, 17872335 - 17872504
Alignment:
Q  125 aggtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattc 224  Q
    ||||| ||||||||| ||| |||||||||||||| |||||| ||| | || | || ||||||||||||||||| || ||  | ||||||||| |||||||    
T  17872335 aggtcgctatcagactctaatagtacaatttgtcctcttctaactacatgaagaaccaaacaaagaacttcaaggataattggaatgaaacatataattc 17872434  T
Q  225 caattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtct 294  Q
    |   ||||||||||||||||||||| |   |||| ||||||||||||||| |||| |||  |||||||||    
T  17872435 cgtatgaagcaaagaaatttcaaatgagagttcaatgacattaaccaaattaagaaacacaccaacgtct 17872504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 12012395 - 12012509
Alignment:
Q  179 aacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaag 278  Q
    |||||||||| || ||||| ||| | || ||||||| ||||||||||||||||||||||| |||||||||| |  ||||| || ||||||||||||||||    
T  12012395 aacaaacaaaaaa-ttcaaggactaggggaatgaaagagataattccaattgaagcaaaggaatttcaaatgacctttcaatggcattaaccaaatcaag 12012493  T
Q  279 agacattccaacgtct 294  Q
      ||||||||||||||    
T  12012494 caacattccaacgtct 12012509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 26576735 - 26576617
Alignment:
Q  131 ctatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattg 230  Q
    ||||||||| | | ||||||||||| ||||||||| |   |||||| | |||||||||||||||||||||||||   |||| |||| ||||||||| |||    
T  26576735 ctatcagactccaatagtacaatttttcttcttctaatctcgtgcagatacaaacaaagaacttcaaagacaaaaagaatg-aacaaataattccagttg 26576637  T
Q  231 aagcaaagaaatttcaaata 250  Q
     | ||||| |||||||||||    
T  26576636 caacaaaggaatttcaaata 26576617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 286
Target Start/End: Original strand, 6589415 - 6589530
Alignment:
Q  171 cgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacc 270  Q
    |||||| ||||||||||||||||||||  |||   | |||||| || |||||| || ||||||||||| |||||| ||| |  |||||  || |||| ||    
T  6589415 cgtgcagaaacaaacaaagaacttcaagaacagttggaatgaatcaaataatttcatttgaagcaaaggaatttcgaatgacctttcaacgatattatcc 6589514  T
Q  271 aaatcaagagacattc 286  Q
    ||||||||| ||||||    
T  6589515 aaatcaagaaacattc 6589530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 23584908 - 23584968
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 205  Q
    ||||||| |||||||| |||| ||  |||| | |||||||||||||||||||| |||||||    
T  23584908 tagtacactttgtcttattctgaccacgtgtataaacaaacaaagaacttcaaggacaaag 23584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 326
Target Start/End: Original strand, 13977214 - 13977480
Alignment:
Q  61 ctcagactttgaaggccacgtcagcatcagaggtctttggctagtttggtcgtcttccgatggaaggtcactatcagacactagta-gtacaatttgtct 159  Q
    |||||||| |||||| |||||||  || ||| | | ||| ||||||| ||| ||||| || |||||||| ||||||||| ||  || ||||| |||| ||    
T  13977214 ctcagactctgaaggtcacgtcaatattagaagaccttgactagttttgtcttcttctgaaggaaggtcgctatcagactctgataagtacagtttgcct 13977313  T
Q  160 tcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcat 259  Q
    |||||| ||| |||||| ||||||||||||||||||||||||||    ||| ||||| |||||||   ||||||||||| |||||||||| |  |||||     
T  13977314 tcttctgactacgtgcagaaacaaacaaagaacttcaaagacaattagaattaaacaaataattctttttgaagcaaaggaatttcaaatgacctttcaa 13977413  T
Q  260 tgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatg 326  Q
     || | |||||| ||||||| |||||||||| |||   ||  || ||||||||||||||| ||||||    
T  13977414 cgataataaccatatcaagaaacattccaacatcttggattaagtttctcaaggactcaattttatg 13977480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 320
Target Start/End: Complemental strand, 12236298 - 12236156
Alignment:
Q  178 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaa 277  Q
    ||||| || ||||||||||| |||||  |||||||||| |||||||||  ||||||||||  ||||| ||||   ||||||  |||||||||||| ||||    
T  12236298 aaacatacgaagaacttcaaggacaattgaaatgaaacggataattccttttgaagcaaaagaattttaaatgtcttttcaacgacattaaccaactcaa 12236199  T
Q  278 gagacattccaacgtctctcatcgagattctcaaggactcaaa 320  Q
    || |||||  ||||||| | ||| || |||||| |||||||||    
T  12236198 gaaacatttgaacgtctatgatcaagcttctcagggactcaaa 12236156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 27940937 - 27940814
Alignment:
Q  202 aaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcg 301  Q
    ||||| ||||||||| ||||||||||||||   |||  |||||||||  |  |||||  ||||||||||||||||||| ||||| ||| |||||| |||     
T  27940937 aaagggaatgaaacatataattccaattgagataaaagaatttcaaacgacctttcaacgacattaaccaaatcaagaaacatt-caatgtctctgatca 27940839  T
Q  302 agattctcaaggactcaaatttatg 326  Q
    || ||||||| ||||||||||||||    
T  27940838 agcttctcaatgactcaaatttatg 27940814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 12191226 - 12191080
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 244  Q
    ||||||| ||||||||||| | ||   ||||| ||||| | ||||||||||||||||||  | | |||| |||||||||||  ||||||||||| |||||    
T  12191226 tagtacactttgtcttcttgtaaccatgtgcagaaacagaaaaagaacttcaaagacaattggattgaa-cagataattccttttgaagcaaaggaattt 12191128  T
Q  245 caaataatttttcattgacattaaccaaatcaagagacattccaacgt 292  Q
    |||||    || ||   |||||||||||||||||| | ||||||||||    
T  12191127 caaatgtcgttccaacaacattaaccaaatcaagaaatattccaacgt 12191080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 23866093 - 23865971
Alignment:
Q  172 gtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacca 271  Q
    ||||| |||||||||||||||||||| |||||  | ||||||||  ||||||||  ||||||||||| ||||| |||| |  ||  |  |||||||| ||    
T  23866093 gtgcataaacaaacaaagaacttcaaggacaattggaatgaaacgaataattccttttgaagcaaaggaattttaaatgacattcaaacgacattaatca 23865994  T
Q  272 aatcaagagacattccaacgtct 294  Q
     ||||||| |||||||| |||||    
T  23865993 tatcaagaaacattccaccgtct 23865971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 11779921 - 11779872
Alignment:
Q  193 ttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaat 242  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||| ||||    
T  11779921 ttcaatgacaaagggaatgaaacggataattccaattgaagcaaaaaaat 11779872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 17743666 - 17743585
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattcca 226  Q
    |||||| |||||||||||| | ||  |||||| |||||||||||||| ||||| |||||||  |||| ||||||| ||||||    
T  17743666 tagtactatttgtcttcttatgaccacgtgcagaaacaaacaaagaagttcaatgacaaagagaatgtaacagatcattcca 17743585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 9883408 - 9883460
Alignment:
Q  152 atttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 204  Q
    |||||| ||||||| ||| || |||||||||||||||||||||||| ||||||    
T  9883408 atttgtattcttctgactacgcgcaaaaacaaacaaagaacttcaatgacaaa 9883460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 5984521 - 5984594
Alignment:
Q  128 tcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagac 201  Q
    ||||||||||||   |||||||||||||||||| |||| ||  |||||| |||||||||  ||| |||||||||    
T  5984521 tcactatcagactagagtagtacaatttgtcttattctgaccacgtgcagaaacaaacagtgaaattcaaagac 5984594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 11545316 - 11545216
Alignment:
Q  148 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 247  Q
    |||||||||||||||||| ||   ||| | ||||||||||| |||||||| |||||||  ||| |||| |||||||||| ||  | ||||| ||||||||    
T  11545316 tacaatttgtcttcttctgaccatgtgtagaaacaaacaaaaaacttcaaggacaaagagaat-aaacggataattccagtttcaacaaaggaatttcaa 11545218  T
Q  248 at 249  Q
    ||    
T  11545217 at 11545216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 13929062 - 13929155
Alignment:
Q  112 gtcttccgatggaaggtcactatcagacact-agtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 204  Q
    |||||| ||||||| |||||||||| || || | ||||| | ||||||||||||  ||  ||||||||||||||||| ||| ||||| ||||||    
T  13929062 gtcttctgatggaatgtcactatcatactctgaatagtagagtttgtcttcttcaaaccacgtgcaaaaacaaacaaggaaattcaaggacaaa 13929155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 327
Target Start/End: Original strand, 29076817 - 29077022
Alignment:
Q  122 ggaaggtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataa 221  Q
    ||||||||| |||||||| ||  ||||| ||||| ||||||||| |   |||||| |||||||||||  | ||||| |||||| ||||||||||  ||||    
T  29076817 ggaaggtcattatcagactctgatagtataatttatcttcttctaaacacgtgcagaaacaaacaaaacaattcaaggacaaatgaaatgaaacgaataa 29076916  T
Q  222 ttccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaat 321  Q
    || || ||||||||||  |||||||||| |  |||||    ||||||||||||||||| |||||||||||||| | ||| || ||||||| | |||||||    
T  29076917 tttcatttgaagcaaatgaatttcaaatgacatttcaacatcattaaccaaatcaagaaacattccaacgtctttgatcaagtttctcaaaggctcaaat 29077016  T
Q  322 ttatgt 327  Q
    ||||||    
T  29077017 ttatgt 29077022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 326
Target Start/End: Complemental strand, 11105515 - 11105254
Alignment:
Q  64 agactttgaaggccacgtcagcatcagaggtctttggctagtttggtcgtcttccgatggaaggtcactatcagacactagtagtacaatttgtcttctt 163  Q
    ||||| |||| |||| |||||||||||| |  | || || |||| ||||||||| ||||||||||| |||||| ||| |  ||||| | |||||||||||    
T  11105515 agactctgaaagccaagtcagcatcagaagcatctgactggttttgtcgtcttctgatggaaggtcgctatcatacattgatagtaaagtttgtcttctt 11105416  T
Q  164 ctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgac 263  Q
    || |   |||| | ||||||| |||  ||||||| || ||||| || |||||| |||||||||||||| | |||| | ||| |||| |  ||||| |||     
T  11105415 ctaatcacgtgtagaaacaaataaa--acttcaaggataaagggaacgaaacatataattccaattgatgaaaaggagtttaaaatgacctttcaatgat 11105318  T
Q  264 attaaccaaatcaagagacattccaacgtctctcatc-gagattctcaaggactcaaatttatg 326  Q
    |||||||| ||||||| |||||| ||||||||| | |  || |||||||||||| |||||||||    
T  11105317 attaaccagatcaagaaacattctaacgtctctgaccaaagcttctcaaggactaaaatttatg 11105254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 147 - 290
Target Start/End: Original strand, 19960263 - 19960404
Alignment:
Q  147 gtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttca 246  Q
    ||||| ||||||||||||| ||  |||||||||||| |||| |||||||||||||||  | |||||| || |||||||   ||||||||||| |||||||    
T  19960263 gtacactttgtcttcttctgaccacgtgcaaaaacatacaa-gaacttcaaagacaattggaatgaa-caaataattctttttgaagcaaaggaatttca 19960360  T
Q  247 aataatttttcattgacattaaccaaatcaagagacattccaac 290  Q
    |||   ||||||  |||||||||||||||| || ||||||||||    
T  19960361 aatgtcttttcaacgacattaaccaaatcatgaaacattccaac 19960404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 274
Target Start/End: Complemental strand, 20619819 - 20619698
Alignment:
Q  153 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataat 252  Q
    |||||| |||||| ||| |||||| ||||||||||||||||||||||||||  ||||| ||||||||||||  | |||||  |||  ||||| |||| |     
T  20619819 tttgtcctcttctgactacgtgcagaaacaaacaaagaacttcaaagacaattgaaataaaacagataatttaatttgaaaaaaatgaatttaaaatgac 20619720  T
Q  253 ttttcattgacattaaccaaat 274  Q
     ||||| |||||||||||||||    
T  20619719 ctttcaatgacattaaccaaat 20619698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 22666374 - 22666270
Alignment:
Q  145 tagtacaattt-gtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatt 243  Q
    ||||||||||| |||||||||| ||  |||| | |||| ||||||||||||||| |||||||  |||| |||||||||||||| || |||| || |||||    
T  22666374 tagtacaattttgtcttcttctaaccacgtgtagaaacgaacaaagaacttcaaggacaaagagaatg-aacagataattccagtttaagcgaaaaaatt 22666276  T
Q  244 tcaaat 249  Q
    ||||||    
T  22666275 tcaaat 22666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 35896157 - 35896036
Alignment:
Q  173 tgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaa 272  Q
    |||| ||||||| ||||||||| || || ||  | |||||||  |||||||||  ||||||||||  ||||||||||   ||||||  ||||||||||||    
T  35896157 tgcagaaacaaataaagaactttaaggaaaatcggaatgaaatggataattccttttgaagcaaatgaatttcaaatttcttttcaaagacattaaccaa 35896058  T
Q  273 atcaagagacattccaacgtct 294  Q
    ||||| | ||||||||||||||    
T  35896057 atcaaaaaacattccaacgtct 35896036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 17103360 - 17103424
Alignment:
Q  184 acaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaat 249  Q
    ||||||||||| || || ||||  |||||| |||||||||||| ||| ||||||||||||||||||    
T  17103360 acaaagaactttaaggataaagagaatgaa-cagataattccagttgcagcaaagaaatttcaaat 17103424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 17316391 - 17316460
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaa 214  Q
    ||||||||||||||||||||| ||   ||| | |||||||||| |||||| || ||||||| ||||||||    
T  17316391 tagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaggaactttaaggacaaagaaaatgaaa 17316460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 12669098 - 12669150
Alignment:
Q  153 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 205  Q
    ||||||||||||| ||  | |||||||||| |||||||||||||| |||||||    
T  12669098 tttgtcttcttctgaccacatgcaaaaacagacaaagaacttcaaggacaaag 12669150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 30805835 - 30805887
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaa 197  Q
    |||||||||||||||||||||  |  |||| | ||||||||||||||||||||    
T  30805835 tagtacaatttgtcttcttctggccacgtgtagaaacaaacaaagaacttcaa 30805887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 6909 - 7024
Alignment:
Q  178 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaa 277  Q
    ||||||||||||||| | || |||||  | ||||||||||||||||||  |||||||||||||||||||||||  ||||||  |||||||||||||||||    
T  6909 aaacaaacaaagaacattaaggacaattggaatgaaacagataattccttttgaagcaaagaaatttcaaatatcttttcaacgacattaaccaaatcaa 7008  T
Q  278 gagacattccaacgtc 293  Q
    || ||||| |||||||    
T  7009 gaaacatttcaacgtc 7024  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 294
Target Start/End: Original strand, 19691923 - 19692066
Alignment:
Q  151 aatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaata 250  Q
    |||||||| |||||| |||  ||| | ||||||||||||| |||||| |||||  ||||||||||  ||||||  | ||||||||||| |||||| |||     
T  19691923 aatttgtcctcttctgactatgtgtagaaacaaacaaagagcttcaaggacaattgaaatgaaacgaataatttaatttgaagcaaaggaatttcgaatg 19692022  T
Q  251 atttttcattgacattaaccaaatcaagagacattccaacgtct 294  Q
    |  |||||  ||||||||||||||||||| ||||||||| ||||    
T  19692023 agctttcaacgacattaaccaaatcaagaaacattccaatgtct 19692066  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 314
Target Start/End: Original strand, 23601028 - 23601170
Alignment:
Q  172 gtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacca 271  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||| || |||| |||||||||| || |||||  ||| | |  |||  |||||||| ||    
T  23601028 gtgcaaaaacaaacaaagaaattcaaggacaaagggaatgaaacaaatcattctaattgaagcagaggaattttgaatgactactcaacgacattaatca 23601127  T
Q  272 aatcaagagacattccaacgtctctcatcgagattctcaagga 314  Q
    |||||    | |||||||||||||| ||| || ||||||||||    
T  23601128 aatcagacaatattccaacgtctctaatcaagcttctcaagga 23601170  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 21747164 - 21747105
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 204  Q
    |||| |||||| ||||||||| ||  |||||| | |||||||||||||||||||||||||    
T  21747164 tagttcaatttatcttcttctgaccacgtgcagatacaaacaaagaacttcaaagacaaa 21747105  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 326
Target Start/End: Original strand, 13112394 - 13112575
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 244  Q
    ||||||| ||||||||||||| ||  |||||| | ||||||||||||||| || |||||  ||||| |||| | |||||||  ||||||||||  || ||    
T  13112394 tagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacaattgaaataaaacgggtaattccttttgaagcaaatgaactt 13112493  T
Q  245 caaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatg 326  Q
      ||| |  |||||  ||||||||||||||||| | | |||||||||||||| ||  || ||||||||||||| || |||||    
T  13112494 tgaatgacatttcaacgacattaaccaaatcaaaaaatattccaacgtctctgattaagcttctcaaggactctaaattatg 13112575  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 319
Target Start/End: Complemental strand, 26704635 - 26704488
Alignment:
Q  172 gtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacca 271  Q
    ||||||||| |||||||||| ||||| |||||||  |||| || | || |||| ||  |||||||||||||||||||| | | ||||  |||||||||||    
T  26704635 gtgcaaaaataaacaaagaaattcaaggacaaagagaatgcaatatatcattctaaaagaagcaaagaaatttcaaatgactattcaacgacattaacca 26704536  T
Q  272 aatcaagagacattccaacgtctctcatcgagattctcaaggactcaa 319  Q
    | |||||  | ||||||  |||||| ||| ||  |||||| |||||||    
T  26704535 agtcaagcaatattccattgtctctgatcaagcatctcaatgactcaa 26704488  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 25563999 - 25564061
Alignment:
Q  143 agtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 205  Q
    ||||||| ||||||||||||||| ||  |||| | |||||||||||||| |||||| ||||||    
T  25563999 agtagtataatttgtcttcttctgaccacgtgtagaaacaaacaaagaaattcaaaaacaaag 25564061  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 42256404 - 42256288
Alignment:
Q  132 tatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattga 231  Q
    |||||||| ||  ||||||| ||||||||||| | ||  |||||| | ||||||||||||||||||  ||||| | |||| ||| | |||||| |||||     
T  42256404 tatcagactctgatagtacattttgtcttcttgtaaccacgtgcagatacaaacaaagaacttcaagtacaaaaggaatg-aacgggtaattctaattgc 42256306  T
Q  232 agcaaagaaatttcaaat 249  Q
    || |||| ||||||||||    
T  42256305 agtaaaggaatttcaaat 42256288  T

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Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 292
Target Start/End: Complemental strand, 137185 - 137004
Alignment:
Q  112 gtcttccgatggaaggtcactatcagacact-agtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaat 210  Q
    |||||| || |||||||| ||||||||| || | ||||||||||||||  ||||||||  |||||| | |||||||||||| ||||| |||||| |||||    
T  137185 gtcttctgaaggaaggtcgctatcagactctgaatagtacaatttgtcaccttctcaccacgtgcagatacaaacaaagaa-ttcaaggacaaaagaaat 137087  T
Q  211 gaaacagataattc-caattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgt 292  Q
    |||||| |  ||||  ||| |||||||||||||||| ||| | |  |||   ||||||||||||||| |  ||||||||||||    
T  137086 gaaacaaaccattcttaatagaagcaaagaaatttcgaattactactcaacaacattaaccaaatcatgctacattccaacgt 137004  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 285
Target Start/End: Complemental strand, 28981317 - 28981163
Alignment:
Q  127 gtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattcca 226  Q
    |||||||||||||    |||||||| |||||||||||  ||||   |||| ||||||||||||||||||||||||||  | |||| ||| ||||||| |     
T  28981317 gtcactatcagacttaggtagtacactttgtcttcttaccact---tgcagaaacaaacaaagaacttcaaagacaattgtaatg-aacggataatttct 28981222  T
Q  227 attgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacatt 285  Q
     ||||||||| |  ||||||||  | ||||||  ||||||||||||||||||| |||||    
T  28981221 tttgaagcaaggggatttcaaacgacttttcaacgacattaaccaaatcaagaaacatt 28981163  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 293
Target Start/End: Original strand, 11609157 - 11609257
Alignment:
Q  193 ttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgt 292  Q
    ||||| |||||| | ||||||||  ||||||||||||||||||||| |||||| | ||  |||| |  ||||||||||| ||||||| | ||||||||||    
T  11609157 ttcaaggacaaaaggaatgaaacctataattccaattgaagcaaaggaatttcgagtatgtttttaacgacattaaccatatcaagaaatattccaacgt 11609256  T
Q  293 c 293  Q
    |    
T  11609257 c 11609257  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 26822430 - 26822370
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 205  Q
    ||||||||||| |||||||||||||  ||| | |||||||||||||||||||| |||||||    
T  26822430 tagtacaatttatcttcttctcactatgtgtagaaacaaacaaagaacttcaaggacaaag 26822370  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 1783114 - 1783011
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 244  Q
    |||||||||||||| |||||| ||  |||| ||||| ||||||||||||||||  ||||||  |||| ||| |||||||||  ||| || |||| |||||    
T  1783114 tagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg-aacggataattcccgttgtagtaaaggaattt 1783016  T
Q  245 caaat 249  Q
    |||||    
T  1783015 caaat 1783011  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 14054374 - 14054430
Alignment:
Q  338 agatgcttttaacgtggtcttggcgctgaatgttcaccaacaatctctcacctatgc 394  Q
    |||| ||||||| |||||||||||| |||||||||| |||||||||| ||| |||||    
T  14054374 agatacttttaaggtggtcttggcgttgaatgttcatcaacaatctcccacgtatgc 14054430  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 14364402 - 14364458
Alignment:
Q  338 agatgcttttaacgtggtcttggcgctgaatgttcaccaacaatctctcacctatgc 394  Q
    |||| ||||||| |||||||||||| |||||||||| |||||||||| ||| |||||    
T  14364402 agatacttttaaggtggtcttggcgttgaatgttcatcaacaatctcccacgtatgc 14364458  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 27707316 - 27707375
Alignment:
Q  145 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 204  Q
    |||||||||||||| |||||| ||  | || | |||||||||||||||||||||||||||    
T  27707316 tagtacaatttgtcctcttctgaccacatgtagaaacaaacaaagaacttcaaagacaaa 27707375  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 32957672 - 32957606
Alignment:
Q  178 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttc 245  Q
    |||||||||||||||||||| |||||||  |||| |||||||||||||| ||  ||||||| ||||||    
T  32957672 aaacaaacaaagaacttcaaggacaaagataatg-aacagataattccagtttcagcaaaggaatttc 32957606  T

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Target: scaffold0514 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 327
Target Start/End: Complemental strand, 7337 - 7158
Alignment:
Q  148 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 247  Q
    ||||||||||| |||||| ||  |||||| |||||||||||||||||||| |||||  | |||||| |  |||||| || ||||||||||| |||||  |    
T  7337 tacaatttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaatcgaataatttcatttgaagcaaaggaattttga 7238  T
Q  248 ataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatgt 327  Q
    || |  |||||  || |||| ||||||||||| |||||| | | ||| | ||  || ||||||| | |||||||||||||    
T  7237 atgacctttcaacgatattatccaaatcaagaaacattcaagcatctatgattaagcttctcaaagtctcaaatttatgt 7158  T

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Target: scaffold1190 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 286
Target Start/End: Complemental strand, 1363 - 1225
Alignment:
Q  148 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 247  Q
    |||| |||||| |||||| ||  |||||| |||||||||||||||||||| |||||  | |||||| |  |||||| || ||||||||||| |||||  |    
T  1363 tacagtttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaatcgaataatttcatttgaagcaaaggaattttga 1264  T
Q  248 ataatttttcattgacattaaccaaatcaagagacattc 286  Q
    || |  |||||  || |||| ||||||||||| ||||||    
T  1263 atgacctttcaacgatattatccaaatcaagaaacattc 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 4421 - 4286
Alignment:
Q  153 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataat 252  Q
    ||||||||||||| |   |||||| | |||||||| ||||||||| |||||| | |||||| | |||||||||   |  | ||||| |||||||||| |     
T  4421 tttgtcttcttctgatcacgtgcagatacaaacaa-gaacttcaaggacaaatggaatgaa-cggataattccttgttcaacaaaggaatttcaaatgac 4324  T
Q  253 ttttcattgacattaaccaaatcaagagacattccaac 290  Q
    ||||||  ||||||||||||||||||| ||||||||||    
T  4323 ttttcaacgacattaaccaaatcaagaaacattccaac 4286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 5997 - 5897
Alignment:
Q  148 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 247  Q
    |||| ||||||||||||| ||  |||| ||||||||| |||||||||||  |||||||  |||| || ||||||||| | ||  ||||||| ||||||||    
T  5997 tacagtttgtcttcttctgacaacgtgtaaaaacaaagaaagaacttcagggacaaagagaatg-aatagataattcaagtttcagcaaaggaatttcaa 5899  T
Q  248 at 249  Q
    ||    
T  5898 at 5897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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