View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4453-Insertion-1 (Length: 720)
Name: NF4453-Insertion-1
Description: NF4453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4453-Insertion-1 |
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| [»] chr1 (7 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 617; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 8 - 720
Target Start/End: Original strand, 40036218 - 40036923
Alignment:
| Q |
8 |
cttttttgtttgtatgctatgaatattatgtctagtgtgaatacttggattatctaagcagcaagcttatggacctggtgattatcttttgaatattaac |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40036218 |
cttttttgtttgtatgctatgaatattatgtctagtgtgaatacttggattatctaagcagcaagtttatggacctggtgattatcttttgaatattaac |
40036317 |
T |
|
| Q |
108 |
tatctatctgtgtgtttattccttgctagaaagttttgaagtttttgctgggtcaagtatctctgattgttctaggaaatatagatgaacatcactgtct |
207 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40036318 |
tatctatctgtgtgtttattccttgctagaaagttctgaagtttttgttgggtcaagtatctctgattgttctaggaaatatagatgaacatcattgtct |
40036417 |
T |
|
| Q |
208 |
tgctatggttttattcagtctttaagagttcattatattaatgctaaaattagatatttgttagaattagtaaggcttcttgtggtacttgtaaatgtgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40036418 |
tgctatggttttattcagtctttaagagttcattatattaatgctaaaattagatatttgttagaattagtaaggcttcttgtggtacttgtaaatgtgc |
40036517 |
T |
|
| Q |
308 |
tttgagtttggaatattcctacatcacatcttattttcacttccatcttgtgcatgtgtcttctgaatttttctcaatcatgtgtttagagatttctctt |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40036518 |
tttgagtttggaatattcctacatcacatcttattttcacttccatcttgtgcatgtgtcttctgaacttttctcaatcatgtgtttagagatttctctt |
40036617 |
T |
|
| Q |
408 |
atgcaattaatcttgctaagnnnnnnntgggatgactgctatgcttgcaaatcattcaaggtcgttaagatattttgaccccttggttgctgctatgttg |
507 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40036618 |
atgcaattaatcttgctaagaaaaaaatgggatgtctgctatgcttgcaaatcattcaaggt-------atattttgaccccttggttgctgctatgttg |
40036710 |
T |
|
| Q |
508 |
taattgaaccatcttgttagtgtttgcataannnnnnnccttgacttgtatttctgttatattaccattgttattcttggtgttattgaccaacatatcc |
607 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40036711 |
taattgaaccatcttgttagtgtttgcataatttttttccttgacttgtatttctgttatattaccattgttattcttggttttattgaccaacatatcc |
40036810 |
T |
|
| Q |
608 |
attcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgttaaattggatttgctc |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40036811 |
attcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgttaaattggatttgctc |
40036910 |
T |
|
| Q |
708 |
catgtgttttgag |
720 |
Q |
| |
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||||||||||||| |
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| T |
40036911 |
catgtgttttgag |
40036923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 435 - 720
Target Start/End: Original strand, 40031295 - 40031579
Alignment:
| Q |
435 |
tgggatgactgctatgcttgcaaatcattcaaggtcgttaagatattttgaccccttggttgctgctatgttgtaattgaaccatcttgttagtgtttgc |
534 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||| ||||||| | | | |||||||||| ||||||||| ||||||| |||||||||| |
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| T |
40031295 |
tgggatgtctgctatgcttgcaaatcattcaagttcgttaagatcttttgactcttgagatgctgctatggcgtaattgaatcatcttgatagtgtttgc |
40031394 |
T |
|
| Q |
535 |
ataannnnnnnccttgacttgtatttctgttatattaccattgttattcttggtgttattgaccaacatatccattcgtaaaaaatcatgaatgctttca |
634 |
Q |
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|||| || |||||||| |||||||| ||||||||||||||||||| | ||||||||||| |||| ||| ||||||||||| |||| ||| | |
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| T |
40031395 |
ataatcttct-ccatgacttgtttttctgttgtattaccattgttattcttcggtttattgaccaatgtatctatttgtaaaaaatcaggaatattttta |
40031493 |
T |
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| Q |
635 |
tctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgttaaattggatttgctccatgtgttttgag |
720 |
Q |
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| T |
40031494 |
tctttgtaaaattcaataagctcaaattgttgttttaagtcttgcaacctttttctttaaactggatttgctccatgtgttttgag |
40031579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 40031124 - 40031241
Alignment:
| Q |
204 |
gtcttgctatggttttattcagtctttaagagttcattatattaatgctaaaattagatatttgttagaattagtaaggcttcttgtggtacttgtaaat |
303 |
Q |
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|||| ||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
40031124 |
gtctcgctatggctttattcagcctttaggagttcattatactaatgctaaaattagatatttgttagaattagtaaggcttcttgtgctgcttgtaaat |
40031223 |
T |
|
| Q |
304 |
gtgctttgagtttggaat |
321 |
Q |
| |
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||||||||||||||||| |
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| T |
40031224 |
ctgctttgagtttggaat |
40031241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 7892241 - 7892363
Alignment:
| Q |
8 |
cttttttgtttgtatgctatgaatattatgtctagtgtgaatacttggattatctaagcagcaagcttatggacctggtgattatcttttgaatattaac |
107 |
Q |
| |
|
||||||||||| |||||||||| |||| ||||||||||||||||||||||| | ||||||| ||| || | |||| || || |||||| ||| | ||| |
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| T |
7892241 |
cttttttgtttttatgctatgattattgtgtctagtgtgaatacttggattttgtaagcagaaagtttccaggcctgctgcttttcttttaaatgtcaac |
7892340 |
T |
|
| Q |
108 |
tatctatctgtgtgtttattcct |
130 |
Q |
| |
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||| ||| || |||||||||||| |
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| T |
7892341 |
tatttatttgcgtgtttattcct |
7892363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 38139086 - 38139236
Alignment:
| Q |
8 |
cttttttgtttgtatgctatgaatattatgtctagtgtgaatacttggattatctaagcagcaagcttatggacctggtgattatcttttgaatattaac |
107 |
Q |
| |
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|||||| |||| |||||||||| || | ||||| |||||||||||| |||| | |||||||||| || ||||||| ||||| |||||||||||| ||| |
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| T |
38139086 |
ctttttcgtttttatgctatgattactgtgtcttgtgtgaatactt-gattttgtaagcagcaaatttccggacctgctgattttcttttgaatatcaac |
38139184 |
T |
|
| Q |
108 |
tatctatctgtgtgtttattccttgctagaaagttttgaagtttttgctgggtca |
162 |
Q |
| |
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||| || | ||||||||||||||| | | ||||| ||||||||||||||||| |
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| T |
38139185 |
tattta--tttgtgtttattccttgttgtgatgtttt-aagtttttgctgggtca |
38139236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 32574592 - 32574651
Alignment:
| Q |
31 |
tattatgtctagtgtgaatacttggattatctaagcagcaagcttatggacctggtgatt |
90 |
Q |
| |
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|||| ||||||| ||||||||||||||| | ||||||||||| || |||||||| ||||| |
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| T |
32574592 |
tattgtgtctagcgtgaatacttggattttgtaagcagcaagtttctggacctgttgatt |
32574651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 45984954 - 45985045
Alignment:
| Q |
36 |
tgtctagtgtgaatacttggattatctaagcagcaagcttatggacctggtgattatcttttgaatattaactatctatctgtgtgtttatt |
127 |
Q |
| |
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||||||||||||| ||||||||| | |||||| || || |||||||| ||||| | |||||||||| |||| | ||| |||||||||||| |
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| T |
45984954 |
tgtctagtgtgaacacttggattttgctagcagcgagtttctggacctgctgattttgttttgaatatcaactctttatttgtgtgtttatt |
45985045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 7e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 592 - 720
Target Start/End: Complemental strand, 1346992 - 1346864
Alignment:
| Q |
592 |
attgaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgt |
691 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||| |
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| T |
1346992 |
attgaccaacgtatccattcgtaaaaaatcatgaatactttcatctttgcaaaattcaatcagctcaaattcttgttttaagccttgtaacctttttcgt |
1346893 |
T |
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| Q |
692 |
taaattggatttgctccatgtgttttgag |
720 |
Q |
| |
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|||||||||| |||| ||| ||||||||| |
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| T |
1346892 |
taaattggatctgcttcatatgttttgag |
1346864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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