View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4453-Insertion-2 (Length: 560)
Name: NF4453-Insertion-2
Description: NF4453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4453-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 7 - 557
Target Start/End: Original strand, 50372565 - 50373111
Alignment:
| Q |
7 |
aatttttatgaaccaaaactttgaccttccaaattcctgcaaatataaccaatatcaactgagctaaggaagaaacagagcattcaaattgaattagaat |
106 |
Q |
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| T |
50372565 |
aatttttatgaaccaaaactttgaccttccaaattcctgcaaatataaccaatatcaactgagctaaggaagaaacagagcattcaaattgaattagaat |
50372664 |
T |
|
| Q |
107 |
aaagaaaaatgataataatagaatagaaagcaggaactataacaagaggaaacaaattcatttgaccgtcccgttataaaatcctagtaatacagtctgg |
206 |
Q |
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| T |
50372665 |
aa-gaaaaatgataataatagaatagaaagcgggaactataacaagaggaaacaaattcatttgaccgtcccgttataaaatcctagtaatacagtctgg |
50372763 |
T |
|
| Q |
207 |
ctggttttcagaataaggttcaaatgtgcttaaaattcaaatattattaaattagcctagtgcataaacgagaacaacttaagctattctcaataaaaat |
306 |
Q |
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| T |
50372764 |
ctggttttcagaataaggttcaaatgtgcttaaaattcaaatatt---aaattagcctagagcataaacgagaacaacttaagctattctcaataaaaat |
50372860 |
T |
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| Q |
307 |
gttgcagaatgtaactttttaaaatgcaattgctacaagtaaatgtgtcaatgacctttgatacaaacacaatttatttattcatcgaaaaagattatat |
406 |
Q |
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| T |
50372861 |
gttgcagaatgtaactttttaaaatgcaattgctacaagtaaatgtgtcaatgacctttgatacaaacacaatttatttattcatcgaaaaagattatat |
50372960 |
T |
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| Q |
407 |
atatgtatacacaatttatttattcaagtgaacagaatcagcaaaagtaacagcttcataaagcgtgatcaaagaaaacagataaagcagaacccctggg |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |
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| T |
50372961 |
atatgtatacacaatttatttattcaagtgaacagaatcagcaaaagtaacagcttcataaagcgtaatcaaagaaaacggttaaagcagaacccctggg |
50373060 |
T |
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| Q |
507 |
gtggtgattttcaaagctaaacctcttgttccaaagaaacaaagtaaacgt |
557 |
Q |
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| T |
50373061 |
gtggtgattttcaaagctaaacctcttgttccaaagaaacaaagtaaacgt |
50373111 |
T |
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