View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4453_high_1_N (Length: 362)
Name: NF4453_high_1_N
Description: NF4453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4453_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 99 - 346
Target Start/End: Complemental strand, 18539431 - 18539184
Alignment:
| Q |
99 |
atacatcacgtcagccttacatttttcttcaattatctgctgccagtatattgcaactagatggaggacaagaactataaattggaacaacgcattaaag |
198 |
Q |
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| T |
18539431 |
atacatcacgtcagccttacatttttcttcaattatctgctgctagtatattgcaactagatggagaacaagaactacaaattggaacaacgcattaaag |
18539332 |
T |
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| Q |
199 |
ctagttagaactaagtctcatgttctctgcgtgccaatcaccatgtcaaatcttcacatattcataaaactatgatccacgttcttttgatattgaagtc |
298 |
Q |
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| T |
18539331 |
ctagttagaactaagtctcatgttctctgcgtgccaatcaccatgccaaatcttcacatattcataaaactatgatccacgttcttttgatattgaagtc |
18539232 |
T |
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| Q |
299 |
atacatagctaatattaatcaataagaacagaagtaactaaactcact |
346 |
Q |
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| T |
18539231 |
atacatagctaatattaatcaataagaacagaagtaactaaactcact |
18539184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 346
Target Start/End: Original strand, 2355644 - 2355769
Alignment:
| Q |
230 |
tgccaatcaccatgtcaaatcttcacatattcata--aaactatgatccacgttcttttgatattgaagt----catacatagctaatattaatcaat-- |
321 |
Q |
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| T |
2355644 |
tgccaatcaccatcccaaatcttcacatattcataacaaaccaggatccatgttctatcattattcaagtcatacatacatagctaacattaatcaatca |
2355743 |
T |
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| Q |
322 |
-aagaacagaagtaactaaactcact |
346 |
Q |
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| T |
2355744 |
gaagaacagaattaacaaaactcact |
2355769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 346
Target Start/End: Original strand, 22721627 - 22721728
Alignment:
| Q |
245 |
caaatcttcacatattcataaaactatgatccacgttcttttgatattgaagtcata--catagctaatattaatcaataagaacagaagtaactaaact |
342 |
Q |
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||||||||||||||||| ||| | |||||||| |||||| |||| |||||||| |||| |||| |||||||||| ||||||||||||| ||||| |
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| T |
22721627 |
caaatcttcacatattcgtaa--ccatgatccattttctttcattattcaagtcatatacataactaacattaatcaatcggaacagaagtaacaaaact |
22721724 |
T |
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| Q |
343 |
cact |
346 |
Q |
| |
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|||| |
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| T |
22721725 |
cact |
22721728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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