View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4453_low_2 (Length: 301)
Name: NF4453_low_2
Description: NF4453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4453_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 28458102 - 28458365
Alignment:
| Q |
16 |
atgaaaaggagaaggaattgaaacggaaggtagtggttgacatagaaaggaaagataggagtcttgaagaaatggcacaagaggctaatgagtatagaaa |
115 |
Q |
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| T |
28458102 |
atgaaaaggagaaggaattgaaacggaaggtagtggttgacatagaaaggaaagataggagtcttgaagaaatggcacaagaggctaatgagtatagaaa |
28458201 |
T |
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| Q |
116 |
atttgtcatttcataatattattactatataaagtgtgtttgtttgatactcaggtaagtatcttaatccttgaaaaatgaattctagttgagtggctac |
215 |
Q |
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| T |
28458202 |
atttgtcatttcataatattattactatataaagtg----tgtttgatactcaggtaagtatcttaatccttgaaaaatgaattctagttgagtggctac |
28458297 |
T |
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| Q |
216 |
atcagagatgagagtgtagttgttgggtatgttcaaaagcatgaagtgatagtttcttagttaattgt |
283 |
Q |
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| T |
28458298 |
atcagagatgagagtgtagttgttgggtatgttcaaaagcatgaagtgatagtttcttagttaattgt |
28458365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 28523605 - 28523711
Alignment:
| Q |
16 |
atgaaaaggagaaggaattgaaacggaaggtagtggttgacatagaaaggaaagataggagtcttgaagaaatggcacaagaggctaatgagtatagaaa |
115 |
Q |
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||||||| |||||||| |||||| ||||| ||| || || |||| |||||||||||||| ||||| |||||||||||||| ||| ||| || ||||| |
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| T |
28523605 |
atgaaaaagagaaggagttgaaaaggaagctagctgtggatttagagaggaaagataggagccttgatgaaatggcacaagaagctgatgcatacagaaa |
28523704 |
T |
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| Q |
116 |
atttgtc |
122 |
Q |
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| T |
28523705 |
atttgtc |
28523711 |
T |
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