View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4453_low_3 (Length: 242)
Name: NF4453_low_3
Description: NF4453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4453_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 40036223 - 40036001
Alignment:
| Q |
17 |
aaaaagaaacggtcctgccaccgtcgatctag----aagtcagttctgggaacaaaagctgcagagtaagtttactagactagaccagaaatagacatac |
112 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40036223 |
aaaaagaaacggtcctgccaccgtcgatctagctagaagtcagttctgggaacaaaagctgcgaagtaagtttactagactagaccagaaatagacatac |
40036124 |
T |
|
| Q |
113 |
ttcggatcaaagtccattttatgtaataacgacaatagacttgcctagattgataatccatcaaaattcacttcttcaatccctttctttgacttactgc |
212 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40036123 |
ttcggatcaaagtccattttgtgtaataacgacaatagacttgcctagattgataatccgtcaaaattcacttcttcaatccctttctttgacttactgc |
40036024 |
T |
|
| Q |
213 |
ctcctgcatcctgattcttctct |
235 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
40036023 |
ctcctgcatcctgatccttctct |
40036001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 50911577 - 50911641
Alignment:
| Q |
133 |
atgtaataacgacaatagacttgcctagattgataatccatcaaaattcacttcttcaatccctt |
197 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
50911577 |
atgtaataacgacaatagacttccctagatagataatccagcaaaattcacttcttcaatacctt |
50911641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 7892246 - 7892189
Alignment:
| Q |
17 |
aaaaagaaacggtcctgccaccgtcgatctagaagtcagttctgggaacaaaagctgc |
74 |
Q |
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||||||||| || |||||||||| ||||||||||| ||||||| |||||||||||||| |
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| T |
7892246 |
aaaaagaaatggacctgccaccgccgatctagaagccagttctaggaacaaaagctgc |
7892189 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 38139091 - 38139036
Alignment:
| Q |
17 |
aaaaagaaacggtcctgccaccgtcgatctagaagtcagttctgggaacaaaagctg |
73 |
Q |
| |
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|||||||||||| ||||||||| || ||||||||| ||||||| ||||||||||||| |
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| T |
38139091 |
aaaaagaaacgg-cctgccaccatcaatctagaagccagttcttggaacaaaagctg |
38139036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 7892144 - 7892043
Alignment:
| Q |
91 |
actagaccagaaatagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagattgataatccatcaaaattcacttcttca |
190 |
Q |
| |
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||||||| | |||||||||| || ||||||| | |||||| |||||||| |||||||||||| ||||||| ||| ||| ||| |||||||| |||| |
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|
| T |
7892144 |
actagacgacaaatagacatcctatggatcaaggaccatttattgtaataaagacaatagacttccctagatagatcatcttgcaagattcactttttca |
7892045 |
T |
|
| Q |
191 |
at |
192 |
Q |
| |
|
|| |
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|
| T |
7892044 |
at |
7892043 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 43067938 - 43067897
Alignment:
| Q |
31 |
ctgccaccgtcgatctagaagtcagttctgggaacaaaagct |
72 |
Q |
| |
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| T |
43067938 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagct |
43067897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 43082897 - 43082938
Alignment:
| Q |
31 |
ctgccaccgtcgatctagaagtcagttctgggaacaaaagct |
72 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
43082897 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagct |
43082938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 4788578 - 4788507
Alignment:
| Q |
91 |
actagaccagaaatagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagat |
162 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||| |||||| ||||||| ||||||||||||| ||||||| |
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| T |
4788578 |
actagacgagaaatagacatactacggatgaaagaccatttattgtaatagcgacaatagacttccctagat |
4788507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 4296617 - 4296697
Alignment:
| Q |
91 |
actagaccagaaatagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagattgataatcc |
171 |
Q |
| |
|
||||||| ||||||||||||||| | ||| |||| |||||| || |||||||||||||||||| ||||||| ||| |||| |
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| T |
4296617 |
actagacgagaaatagacatactacagatgaaagaccatttattgcaataacgacaatagacttccctagatagatcatcc |
4296697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 19965698 - 19965639
Alignment:
| Q |
16 |
caaaaagaaacggtcctgccaccgtcgatctagaagtcagttctgggaacaaaagctgca |
75 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||| ||||||||||||| ||||||||| |
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| T |
19965698 |
caaaaagaaatggccctgccactgtcgatctagaagccagttctgggaacgaaagctgca |
19965639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 19965610 - 19965551
Alignment:
| Q |
103 |
atagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagat |
162 |
Q |
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||||||||||| ||||||||| |||||| ||||||||||||||||||||| ||||||| |
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| T |
19965610 |
atagacatactgcggatcaaataccatttattgtaataacgacaatagactttcctagat |
19965551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 4230525 - 4230566
Alignment:
| Q |
32 |
tgccaccgtcgatctagaagtcagttctgggaacaaaagctg |
73 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4230525 |
tgccaccgtcgatctagaacccagttctgggaacaaaagctg |
4230566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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