View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4454-Insertion-1 (Length: 938)

Name: NF4454-Insertion-1
Description: NF4454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4454-Insertion-1
NF4454-Insertion-1
[»] chr4 (1 HSPs)
chr4 (8-938)||(36116665-36117594)
[»] chr2 (1 HSPs)
chr2 (619-666)||(2931158-2931205)


Alignment Details
Target: chr4 (Bit Score: 875; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 875; E-Value: 0
Query Start/End: Original strand, 8 - 938
Target Start/End: Complemental strand, 36117594 - 36116665
Alignment:
Q  8 tcttcttcgtactgaaactccaaatccctcttcatcatcttgcttccatctaaagctatctcaatcaacccttctctgtcttcttcttcccactcctctg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36117594 tcttcttcgtactgaaactccaaatccctcttcatcatcttgcttccatctaaagctatctcaatcaacccttctctgtcttcttcttcccactcctctg 36117495  T
Q  108 gcgaatcccaatcttctttcaccggaaactcatcctccgatgagctacccgaatcagattccggatagtaacgtgacaaggaaggatagttcgaattacc 207  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36117494 gcgaatcccaatattctttcaccggaaactcatcctccgaggagctatccgaatcagattccggatagtaacgtgacaacgaaggatagttcgaattacc 36117395  T
Q  208 catgttccagttttcttctttttcatttgaatcatccaatttttcttcatcttcatatccttcgtatattatctccaatggtgctctcacgttccattcc 307  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36117394 catgttccagttttcttctttttcatttggatcatccaatttttcttcatcttcatatccttcgtatattatctccaatggtgctctcacgttccattcc 36117295  T
Q  308 acaaaacttgaacttgattccaaacttttttgggaatccacctctttttctgaatggtgcacttgctccagagactcaatttcctttggttcaactggac 407  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36117294 ataaaacttgaacttgattccaaacttttttgggaatccacctctctttctgaatggtgcacttgctccagagactcaatttcctttggttcaactggac 36117195  T
Q  408 atgttgaattctgtttctcttctccacatttggttgctttgttttcttctttagtgatgatggattcgtgtttctgttgagtttccttttgttcatgata 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  36117194 atgttgaattctgtttctcttctccacatttggttgctttgttttcttctttagtgatgatggattcgtgtttctgttgagtttccttttgtttatgatg 36117095  T
Q  508 atatttttgatttgcaccaagacggaggattgtgagcaagagaatcccggtgagaataagcaccggagagaaaactatcttggagaaaagatgatgaggt 607  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36117094 atatttttgatttgcaccaagtcggaggattgtgagcaagagaatcccggtgagaataagcaccggagagaaaactatcttggagaaaagatgatgaggt 36116995  T
Q  608 aagtataggaaaatcaaggtgcaaaaggtgacaatgcaagaaaacagaggatttgaagagaacattgaagattttgaaatagaggaaatggtttcaacac 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36116994 aagtataggaaaatcaaggtgcaaaaggtgacaatgcaagaaaacagaggatttgaagagaacattgaagattttgaaatagaggaaatggtttcaacac 36116895  T
Q  708 atagagagttcatgaatttatcaagagataaggaagaaactaatttcaattctataaatgtatctaagaaaagtaagatcatgatggaatagaaaggagt 807  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36116894 atagagagttcaagaatttatcaagagataaggaagaaactaatttcaattctataaatgtatctaagaaaagtaaggtcatgatggaatagaaaggagt 36116795  T
Q  808 gtttgggagatgaagaaaaagtgagaaaattttgatgggactaaacaggtccactatgcatgggaaggcttagaagaaagagtgttattgtggggtttat 907  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36116794 gtttgggagatgaagaaaaagtgag-aaattttgatgggactaaacaggtccactatgcatgggaaggcttagaagaaagagtgttattgtggggtttat 36116696  T
Q  908 gagctttatggcgtgagaagaaggcatggaa 938  Q
    |||||||||||||||||||||||||||||||    
T  36116695 gagctttatggcgtgagaagaaggcatggaa 36116665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 619 - 666
Target Start/End: Original strand, 2931158 - 2931205
Alignment:
Q  619 aatcaaggtgcaaaaggtgacaatgcaagaaaacagaggatttgaaga 666  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  2931158 aatcaaggtgcagaaggtaacaatgcatgaaaacagaggatttgaaga 2931205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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