View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4454-Insertion-4 (Length: 574)
Name: NF4454-Insertion-4
Description: NF4454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4454-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 516
Target Start/End: Complemental strand, 13104810 - 13104302
Alignment:
| Q |
8 |
gttaggacttacaaatgagatgtgcattggactccatatttaaagttggatttggaacggaattgaattgcttagaaggatcaagcaaagagggaactga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13104810 |
gttaggacttacaaatgagatgtgcattggactccatatttaaagttggatttggaacagaattgaattgcttagaaggatcaagcaaagagggaactga |
13104711 |
T |
|
| Q |
108 |
attcatgaaagcctttgatgaatcaaatgctttaatttatttgcgttatgttgatccaatttggagtcttaagaggtttcttaacattggtggtgaggct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13104710 |
attcatgaaagcctttgatgaatcaaatgctttaatttatttgcgttatgttgatccaatttggagtcttaagaggtttcttaacattggtggtgaggct |
13104611 |
T |
|
| Q |
208 |
aagcttaaacacaatgtgaaattgattgatgattttgtcaatggagtcataaataccaaaaaggaacaattggcacttcagcaaggttctgtgagttgat |
307 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
13104610 |
aagcttaaacacaatgttaaattgattgatgattttgtcaatggagttataaataccaaaaagtcacaattggaacttcagcaagattctgtgagttgat |
13104511 |
T |
|
| Q |
308 |
caaattccttcctttaatttcttcctcagcagtttctttactgtttacatttcaataaacattatattgtaactttgtataaaaggtagaaataaggctt |
407 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13104510 |
caaattccttccttcaatttcttcctcagcagtttctttactttttacatttcaataaacattatattgtaactttgtataaaaggtagaaataaggctt |
13104411 |
T |
|
| Q |
408 |
gagtagtatctatttagatttcatannnnnnnaggaaaaatgacttaaatagttttcttataagcgaagagcacaatgacataaaatgtcaatgcacaca |
507 |
Q |
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| T |
13104410 |
gattagtatctatttagatttcatatttttttaggaaagatgacttaaatagttttcttataagcgaagagcacaatgacataaaatgtcaatgcacata |
13104311 |
T |
|
| Q |
508 |
tatgttatt |
516 |
Q |
| |
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||| ||||| |
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| T |
13104310 |
tatattatt |
13104302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 13098637 - 13098336
Alignment:
| Q |
9 |
ttaggacttacaaatgagatgtgcattggactccatatttaaagttggatttggaacggaattgaattgcttagaaggatcaagcaaagagggaactgaa |
108 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13098637 |
ttaggacttacaaatgagatgtgcattggattccatattcaaagttggatttggaacagaattgaattgcttagaaggatcaagcaaagagggaactgaa |
13098538 |
T |
|
| Q |
109 |
ttcatgaaagcctttgatgaatcaaatgctttaatttatttgcgttatgttgatccaatttggagtcttaagaggtttcttaacattggtggtgaggcta |
208 |
Q |
| |
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| T |
13098537 |
ttcatgaaagcatttgatgaatcaaatgctttaatttattggcgctatgttgatccaatttggaatcttaagagatttcttaacattggtggtgaggcta |
13098438 |
T |
|
| Q |
209 |
agcttaaacacaatgtgaaattgattgatgattttgtcaatggagtcataaataccaaaaaggaacaattggcacttcagcaaggttctgtgagttgatc |
308 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13098437 |
agcttaaacacaatgttaaattgattgatgattttgtcaatggagttataaataccaaaaaggaacaattggcacttcagcaagactctgtgagttgatc |
13098338 |
T |
|
| Q |
309 |
aa |
310 |
Q |
| |
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|| |
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|
| T |
13098337 |
aa |
13098336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 13114842 - 13114544
Alignment:
| Q |
9 |
ttaggacttacaaatgagatgtgcattggactccatatttaaagttggatttggaacggaattgaattgcttagaaggatcaagcaaagagggaactgaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13114842 |
ttaggacttacaaatgagatgtgcattggactctatattcaaagttggatttggaacagaattgaattgcttagaaggatcaagcaaagagggaactgaa |
13114743 |
T |
|
| Q |
109 |
ttcatgaaagcctttgatgaatcaaatgctttaatttatttgcgttatgttgatccaatttggagtcttaagaggtttcttaacattggtggtgaggcta |
208 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13114742 |
ttcatgaaagcatttgatgaatcaaatgctttaatttattggcgctatgttgatccaatttggagtcttaagagatttcttaacattggtggtgaggcta |
13114643 |
T |
|
| Q |
209 |
agcttaaacacaatgtgaaattgattgatgattttgtcaatggagtcataaataccaaaaaggaacaattggcacttcagcaaggttctgtgagttgat |
307 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
13114642 |
agcttaaacacaatgttaaattgattgatgattttgtcaatggagttataaataccaaaaagtcacaattggaacttcagcaagattctgtgagttgat |
13114544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 18670597 - 18670767
Alignment:
| Q |
9 |
ttaggacttacaaatgagatgtgcattggactccatatttaaagttggatttggaacggaattgaattgcttagaaggatcaagcaaagagggaactgaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18670597 |
ttaggacttacaaatgagatgtgcattggactctatattcaaagttggatttggaacagaattgaattgcttagaaggatcaagcaa--agggaactgaa |
18670694 |
T |
|
| Q |
109 |
ttcatgaaagcctttgatgaatcaaatgctttaatttatttgcgttatgttgatccaatttggagtcttaaga |
181 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| |
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|
| T |
18670695 |
ttcatgaaagcatttgatgaatcaaatgctttaatttattggcgctatgttgatccaatttggaatcttaaga |
18670767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 13078935 - 13078829
Alignment:
| Q |
34 |
ttggactccatatttaaagttggatttggaacggaattgaattgcttagaaggatcaagcaaagagggaactgaattcatgaaagcctttgatgaatcaa |
133 |
Q |
| |
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|||||||||||||| |||||||| |||||| |||||||||||||||||| |||||||||||| | | | |||||||| |||||| |||| |||| |
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| T |
13078935 |
ttggactccatattcaaagttgggtttggagtggaattgaattgcttagagaaatcaagcaaagaagcgaatatcttcatgaaggcctttaatgattcaa |
13078836 |
T |
|
| Q |
134 |
atgcttt |
140 |
Q |
| |
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||||||| |
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|
| T |
13078835 |
atgcttt |
13078829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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