View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4454-Insertion-6 (Length: 492)
Name: NF4454-Insertion-6
Description: NF4454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4454-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 27677663 - 27677862
Alignment:
| Q |
8 |
aaatcattaatttgaccaagaatatacgtaaatttgttgttgatgtggatgagttcacatggagcagatgatatggataagaaacacttgtgtgtgagta |
107 |
Q |
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| T |
27677663 |
aaatcattaatttgaccaagaatatacgtaaatttgttgttgatgtggatgagttcacatggagcagatgatatggataagaaacacttgtgtgtgagta |
27677762 |
T |
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| Q |
108 |
cccgtgaacacgagaagaaagtaacatgtgaaccaggaatctaatgatatcttaagagctcaaacaccattaagtcaatttgtcaactaactatctttga |
207 |
Q |
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| T |
27677763 |
cacgtgaacacgagaagaaagtaacatgtgaaccaggaatctaatgatatcttaagagctcaaacaccattaagtcaatttgccaactaactatctttga |
27677862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 291 - 492
Target Start/End: Original strand, 27677947 - 27678151
Alignment:
| Q |
291 |
gaatcttatgtgatgttgatcatgattgatgacaaaattattaactttaatccttgcctactttcttttgacaaacaaggaaacaccagtgccaaattta |
390 |
Q |
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| T |
27677947 |
gaatcttatgtgatgttgatcatgaatgatgacaaaattatcaactttaaagcttgcctactttctattgacaaacaaggaaacaccggtattaaattta |
27678046 |
T |
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| Q |
391 |
gtattgtgaattcccctctcatgtatcgatcacccaccacaagggttgctcacagtcttactctcttttacaact---tgttacagagtttgagtttttc |
487 |
Q |
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| T |
27678047 |
gtattgtgaattcccttctcatgtatcgatcactcaccacaagggttgctcacggtcatcctcttttttacaacttcatgttatagagtttgagtttttc |
27678146 |
T |
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| Q |
488 |
aaaat |
492 |
Q |
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| T |
27678147 |
aaaat |
27678151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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