View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4454-Insertion-7 (Length: 469)
Name: NF4454-Insertion-7
Description: NF4454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4454-Insertion-7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Complemental strand, 34492123 - 34491662
Alignment:
| Q |
8 |
gttacatgttatgtcagattgtctgattaccatgttggacgtgttaagttgaacaccaatgactcttatggagataagaatagagcagactgtggtggta |
107 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
34492123 |
gttatatgttacgtcagattgtctgattaccatgttggacgtgttaagttgaacaccaatgactcttatggagataagaagagagcagtctgtggtggta |
34492024 |
T |
|
| Q |
108 |
atattaatggtagtgatggtgaatggcttgacagtttggctaaatatattggatggtatagtacttatatgaaagaactttgaggtatgctataaaattg |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34492023 |
atattaagggtagtgatggtgaatggcttgacagtttggccaaatatattcggttgtatagtacttatatgacagaactttgaggtatgctataaaattg |
34491924 |
T |
|
| Q |
208 |
gggtttttgacggtagagttatatttggactctctaatggttgctaaatttggattctctagttaaacatcgtccttcatt-aaaatatttgtcgtatgt |
306 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34491923 |
gggtttttgacggtagagttaaatgtggactctccaatggttgctaaatttggattctctagttaaacatcgtccttcattaaaaatatttgtcgtatgt |
34491824 |
T |
|
| Q |
307 |
ttgatttagagcgggaggtcgttgttaaatactcttttcgtgaagctaattgacgtgcaaatgtgttaacaaattataggtcctttttgaatgataaaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34491823 |
ttgatttagagcgggaggtcgttgttaaatactcttttcgtgaagctaattgacgtgcaaatgtcttaacaaattataggtcctttttgaatgataaaat |
34491724 |
T |
|
| Q |
407 |
tagactattttgagtcttgtttgtctcaattttcatttacattcatttgatttgacataata |
468 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34491723 |
tagactatttcgagtcttgtttgcatcaattttcatttagattcatttgatttgacataata |
34491662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University