View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4454-Insertion-9 (Length: 172)
Name: NF4454-Insertion-9
Description: NF4454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4454-Insertion-9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 2e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 7 - 172
Target Start/End: Original strand, 560680 - 560845
Alignment:
| Q |
7 |
aagttccaatcccaaggcaagctcattaatttggtattgtgaaagtgtgcccccacttccaaaagaaatgtaaagaactgacttaggttgttgattatct |
106 |
Q |
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| T |
560680 |
aagttccaatcccaaggcaagctcattaatttggtcttgtgaaagtgtgcccccacttccaaaagaaatgtaaagaactgacttaggttgttgattatct |
560779 |
T |
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| Q |
107 |
aaccaacactcacatgcatgttttttaatagttggccttgtttgtatgatgggcccaactggatac |
172 |
Q |
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| T |
560780 |
aaccaacactcacatgcatgttttttaatatttggccttgtttgtatgatgggcccaactggatac |
560845 |
T |
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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 2018468 - 2018532
Alignment:
| Q |
10 |
ttccaatcccaaggcaagctcattaatttggtattgtgaaagtgtgcccccacttccaaaagaaa |
74 |
Q |
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| T |
2018468 |
ttccaaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaa |
2018532 |
T |
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