View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4454_high_1 (Length: 364)

Name: NF4454_high_1
Description: NF4454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4454_high_1
NF4454_high_1
[»] chr7 (11 HSPs)
chr7 (142-353)||(17834625-17834836)
chr7 (14-196)||(12599941-12600123)
chr7 (142-347)||(12612270-12612475)
chr7 (142-347)||(12599646-12599851)
chr7 (225-353)||(12612211-12612339)
chr7 (225-353)||(12599534-12599662)
chr7 (225-347)||(12599593-12599715)
chr7 (189-347)||(25249289-25249447)
chr7 (225-353)||(25249230-25249358)
chr7 (142-196)||(12599869-12599923)
chr7 (187-290)||(21686872-21686975)
[»] chr3 (22 HSPs)
chr3 (142-353)||(14513445-14513655)
chr3 (23-196)||(14513673-14513846)
chr3 (14-196)||(14487022-14487204)
chr3 (142-353)||(14486720-14486932)
chr3 (14-196)||(17471267-17471449)
chr3 (142-287)||(17471539-17471689)
chr3 (189-335)||(17441128-17441279)
chr3 (225-353)||(17441382-17441506)
chr3 (225-335)||(17441329-17441439)
chr3 (142-213)||(14524793-14524864)
chr3 (189-289)||(14503795-14503896)
chr3 (142-196)||(14486950-14487004)
chr3 (142-196)||(14524882-14524936)
chr3 (142-196)||(17471467-17471521)
chr3 (197-293)||(20128023-20128123)
chr3 (143-201)||(13411466-13411524)
chr3 (265-347)||(17441156-17441238)
chr3 (143-187)||(8821216-8821260)
chr3 (233-289)||(17471684-17471740)
chr3 (225-293)||(25407735-25407803)
chr3 (146-194)||(8821145-8821193)
chr3 (225-285)||(20127949-20128009)
[»] scaffold0227 (4 HSPs)
scaffold0227 (142-347)||(20183-20388)
scaffold0227 (225-353)||(20319-20447)
scaffold0227 (142-196)||(20111-20165)
scaffold0227 (142-194)||(20039-20091)
[»] chr4 (18 HSPs)
chr4 (189-353)||(31954355-31954519)
chr4 (189-347)||(40137274-40137432)
chr4 (225-347)||(40137416-40137538)
chr4 (233-353)||(40137477-40137597)
chr4 (142-211)||(25242833-25242902)
chr4 (233-347)||(40137371-40137485)
chr4 (142-196)||(24826159-24826213)
chr4 (225-291)||(24826289-24826355)
chr4 (234-293)||(25242958-25243017)
chr4 (225-293)||(40137522-40137590)
chr4 (257-353)||(24826268-24826368)
chr4 (143-201)||(20634463-20634521)
chr4 (159-192)||(23998428-23998461)
chr4 (142-173)||(24826231-24826262)
chr4 (148-203)||(25242768-25242823)
chr4 (301-347)||(25242972-25243018)
chr4 (233-293)||(25243010-25243071)
chr4 (143-196)||(44079194-44079247)
[»] chr2 (19 HSPs)
chr2 (142-293)||(4109369-4109519)
chr2 (160-293)||(45108201-45108338)
chr2 (210-291)||(37349424-37349505)
chr2 (142-196)||(4109537-4109591)
chr2 (142-196)||(4109631-4109685)
chr2 (142-196)||(37349331-37349385)
chr2 (142-203)||(45108401-45108462)
chr2 (233-293)||(45108120-45108180)
chr2 (142-193)||(45108340-45108391)
chr2 (142-188)||(45110106-45110152)
chr2 (225-287)||(4109322-4109384)
chr2 (233-293)||(13968613-13968674)
chr2 (147-196)||(25057243-25057292)
chr2 (141-188)||(5168875-5168922)
chr2 (233-287)||(4109273-4109327)
chr2 (143-196)||(28388661-28388714)
chr2 (236-293)||(45109839-45109896)
chr2 (233-270)||(45109897-45109934)
chr2 (233-285)||(45110012-45110064)
[»] chr6 (3 HSPs)
chr6 (142-289)||(16990658-16990810)
chr6 (233-293)||(16990548-16990608)
chr6 (240-353)||(16990541-16990654)
[»] chr5 (13 HSPs)
chr5 (142-229)||(38471688-38471775)
chr5 (225-294)||(22860314-22860383)
chr5 (142-212)||(31678759-31678829)
chr5 (235-294)||(28297990-28298049)
chr5 (142-203)||(38471617-38471678)
chr5 (235-347)||(22860165-22860277)
chr5 (225-293)||(22860261-22860329)
chr5 (142-201)||(22875974-22876033)
chr5 (23-105)||(28298316-28298399)
chr5 (227-292)||(38471836-38471901)
chr5 (143-201)||(5539146-5539204)
chr5 (233-294)||(38471895-38471956)
chr5 (233-293)||(22860216-22860276)
[»] chr1 (9 HSPs)
chr1 (142-192)||(7644063-7644113)
chr1 (142-195)||(7643993-7644046)
chr1 (143-196)||(41087988-41088041)
chr1 (233-287)||(7352147-7352201)
chr1 (143-193)||(27120830-27120880)
chr1 (143-193)||(41088062-41088112)
chr1 (143-193)||(41092803-41092853)
chr1 (232-293)||(7352092-7352153)
chr1 (143-196)||(41092729-41092782)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 142 - 353
Target Start/End: Original strand, 17834625 - 17834836
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaagccggccagctca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17834625 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaagcgggccagctca 17834724  T
Q  242 gcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcagcc 341  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  17834725 gcacatcttcagtcaacactggattgactgttcaagtcaagccagccagctcagtatgccctcagtcaacactgggttggtagttcaaatcaagccagcc 17834824  T
Q  342 agctcatctcat 353  Q
    ||||||||||||    
T  17834825 agctcatctcat 17834836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 12600123 - 12599941
Alignment:
Q  14 aatgagatgggtacaaggatgggacaagacatgataaaggacaaataagtttgaatcaaatcagtgttcacaactcggttacgaactagttatttaatgg 113  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12600123 aatgagatggatacaatgatgggacaagacatgataaaggacaaataagtttgaatcaaaccagtgttcacaactcggttacgaactagttatttaatgg 12600024  T
Q  114 acgacgggtcagtatgagtcgtttgagcaaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12600023 acgacgggtcagtatgagtcgtttgagcaaagaacaaacgtctacgccttaacaggcttgatgcttggtggactgtggactgg 12599941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 142 - 347
Target Start/End: Complemental strand, 12612475 - 12612270
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaagccggccagctca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12612475 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaagcgggccagctca 12612376  T
Q  242 gcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcagcc 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | | |||||||||||||| ||| | |||||| ||||| |||||    
T  12612375 gcacgtcttcagtcaacactggattgattgttcaagtcaagccagccagctcagcacgtcttcagtcaacactggattgattgttcaagtcaagccagcc 12612276  T
Q  342 agctca 347  Q
    ||||||    
T  12612275 agctca 12612270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 142 - 347
Target Start/End: Complemental strand, 12599851 - 12599646
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaagccggccagctca 241  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12599851 aaagaacaaacgtctatgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaagcgggccagctca 12599752  T
Q  242 gcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcagcc 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | | |||||||||||||| ||| | |||||| ||||| |||||    
T  12599751 gcacgtcttcagtcaacactggattgattgttcaagtcaagccagccagctcagcacgtcttcagtcaacactggattgattgttcaagtcaagccagcc 12599652  T
Q  342 agctca 347  Q
    ||||||    
T  12599651 agctca 12599646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 225 - 353
Target Start/End: Complemental strand, 12612339 - 12612211
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtag 324  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12612339 tcaagccagccagctcagcacgtcttcagtcaacactggattgattgttcaagtcaagccagccagctcagtatgccctcagtcaacactgggttggtag 12612240  T
Q  325 ttcaaatcaagtcagccagctcatctcat 353  Q
    ||||||||||| |||||||||||||||||    
T  12612239 ttcaaatcaagccagccagctcatctcat 12612211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 225 - 353
Target Start/End: Complemental strand, 12599662 - 12599534
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtag 324  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12599662 tcaagccagccagctcagcacgtcttcagtcaaccctggattgattgttcaagtcaagccagccagctcagtatgccctcagtcaacactgggttggtag 12599563  T
Q  325 ttcaaatcaagtcagccagctcatctcat 353  Q
    ||||||||||| |||||||||||||||||    
T  12599562 ttcaaatcaagccagccagctcatctcat 12599534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 225 - 347
Target Start/End: Complemental strand, 12599715 - 12599593
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtag 324  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | | ||||||||| |||| ||| | |    
T  12599715 tcaagccagccagctcagcacgtcttcagtcaacactggattgattgttcaagtcaagccagccagctcagcacgtcttcagtcaaccctggattgattg 12599616  T
Q  325 ttcaaatcaagtcagccagctca 347  Q
    ||||| ||||| |||||||||||    
T  12599615 ttcaagtcaagccagccagctca 12599593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 189 - 347
Target Start/End: Complemental strand, 25249447 - 25249289
Alignment:
Q  189 tggactggcatgggtaaaccatttccacttgatagttcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagcc 288  Q
    |||||||| | ||||| |||||||||| |||| |  ||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||     
T  25249447 tggactggtacgggtagaccatttccatttgacaagtcaagccagccagctcagcacgtcttcagtcgacactagattgattgttcaagtcaagccagct 25249348  T
Q  289 agctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcagccagctca 347  Q
    ||||| | ||| | |||||| ||||||| ||| | |||||| ||||| |||||||||||    
T  25249347 agctcagcatgtcttcagtcgacactggattgattgttcaagtcaagccagccagctca 25249289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 225 - 353
Target Start/End: Complemental strand, 25249358 - 25249230
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtag 324  Q
    ||||||| || ||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| | | | |||| ||||| | ||||||| |||    
T  25249358 tcaagccagctagctcagcatgtcttcagtcgacactggattgattgttcaagtcaagccagccagctcagcacgtcctctgtcaaaaatgggttgatag 25249259  T
Q  325 ttcaaatcaagtcagccagctcatctcat 353  Q
    ||| ||||||| |||||||||||||||||    
T  25249258 ttccaatcaagccagccagctcatctcat 25249230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 12599923 - 12599869
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  12599923 aaagaacaaacgtctacgccttaacaagcttgacgcttggtgggctgtggactgg 12599869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 21686872 - 21686975
Alignment:
Q  187 tgtggactggcatgggtaaaccatttccacttgatagttcaagcc-ggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagcca 285  Q
    ||||||||||||||| || |||||| || |||||  ||||||| | |||||||||||| |||||||||||||||||||  |||||| ||||||||  |||    
T  21686872 tgtggactggcatggatagaccatt-ccgcttgactgttcaagtcaggccagctcagctcgtcttcagtcaacactggtgtgattgttcaagtcagacca 21686970  T
Q  286 gccag 290  Q
    |||||    
T  21686971 gccag 21686975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 142 - 353
Target Start/End: Complemental strand, 14513655 - 14513445
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaagccggccagctca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||| ||||| |||||||||    
T  14513655 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactagcatgggtagaccatttccatttgatagtt-aagccagccagctca 14513557  T
Q  242 gcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcagcc 341  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||| | | |||||||||||||||||| |||||||||||||| |||||    
T  14513556 gcacgtcttcggtcgacactggattgattgttcaagtcaagccagccagctcagtacgtcttcagtcaacactgggttgatagttcaaatcaagccagcc 14513457  T
Q  342 agctcatctcat 353  Q
    ||||||||||||    
T  14513456 agctcatctcat 14513445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 14513846 - 14513673
Alignment:
Q  23 ggtacaaggatgggacaagacatgataaaggacaaataagtttgaatcaaatcagtgttcacaactcggttacgaactagttatttaatggacgacgggt 122  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  14513846 ggtacaatgatgggacaagacatgataaaggacaaataagtttgaatccaaccagtgtttacaactcggttacgagctagttatttaatggacgatgggt 14513747  T
Q  123 cagtatgagtcgtttgagcaaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    | |||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||    
T  14513746 cggtatgagtcgtttgagcaaagaacaaacttatacgccttaataggcttgacgcttggtggactgtggactgg 14513673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 14487204 - 14487022
Alignment:
Q  14 aatgagatgggtacaaggatgggacaagacatgataaaggacaaataagtttgaatcaaatcagtgttcacaactcggttacgaactagttatttaatgg 113  Q
    |||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| ||||    
T  14487204 aatgaggtgggtataatgatgggacaagacatgataaaggacaaataagtttgaatcaaattagtgtttacaactcggtcacgaactagttatttgatgg 14487105  T
Q  114 acgacgggtcagtatgagtcgtttgagcaaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    ||| ||  || |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||    
T  14487104 acggcgaatcggtatgagtcgtttgagcaaagaacaaacgtttacgccttaacaggcttcacgtttggtggactatggactgg 14487022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 142 - 353
Target Start/End: Complemental strand, 14486932 - 14486720
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaag-ccggccagctc 240  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||| |  ||||||||    
T  14486932 aaagaacaaacgtctacaccttaacaagcttgacgcttggtggactgtgaactggcatgggtagaccatttccatttgattgttcaagtcaagccagctc 14486833  T
Q  241 agcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcagc 340  Q
    |||| | |||||||||||| ||||||||||| |||||||||| ||||||| || | | | | |||||||||||||||||| |||||||||||||||||||    
T  14486832 agcatgacttcagtcaacattggattgattgttcaagtcaagtcagccagttcagcacgtcttcagtcaacactgggttgatagttcaaatcaagtcagc 14486733  T
Q  341 cagctcatctcat 353  Q
    |||||||| ||||    
T  14486732 cagctcatatcat 14486720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 17471267 - 17471449
Alignment:
Q  14 aatgagatgggtacaaggatgggacaagacatgataaaggacaaataagtttgaatcaaatcagtgttcacaactcggttacgaactagttatttaatgg 113  Q
    |||||| |||||| || |||||||||||||| ||| ||||||||||||||||||||||||  |||||| |||||||||| ||||||||||||||| ||||    
T  17471267 aatgaggtgggtataatgatgggacaagacaagatgaaggacaaataagtttgaatcaaactagtgtttacaactcggtcacgaactagttatttgatgg 17471366  T
Q  114 acgacgggtcagtatgagtcgtttgagcaaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    ||| ||| || |||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  17471367 acggcggatcggtatgagtcgtttgagcaaataacaaacgtctacgccttaacaggcttcatgcttggtggactgtggactgg 17471449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 142 - 287
Target Start/End: Original strand, 17471539 - 17471689
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagt-----tcaagccggcca 236  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||     ||||||| ||||    
T  17471539 aaagaacaaacgtctacaccttaacatacttgacgcttggtggactgtggactagcatgggtagaccatttccatttgattgttcaagtcaagccagcca 17471638  T
Q  237 gctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagc 287  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  17471639 gctcagcacgtcttcagtcaacactcgattgattgttcaagtcaagccagc 17471689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 335
Target Start/End: Original strand, 17441128 - 17441279
Alignment:
Q  189 tggactggcatgggtaaaccatttccacttgatagttcaag-----ccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagc 283  Q
    |||||||||||||||| |||||||||| ||||| |||||||     || |||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  17441128 tggactggcatgggtagaccatttccatttgattgttcaagtcaagccagccaactcagcacgtcttcagtcaacactggattgattgttcaagtcaagc 17441227  T
Q  284 cagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaag 335  Q
    |||||||||| | | | | |||||||||||||| ||| | |||||| |||||    
T  17441228 cagccagctcagcacgtcttcagtcaacactggattgattgttcaagtcaag 17441279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 225 - 353
Target Start/End: Original strand, 17441382 - 17441506
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtag 324  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    |||||| || | | | | |||||||||||||||||| | |    
T  17441382 tcaagccagccagctcagcacgtcttcagtcaacactggattgattgttcaagtca----agccagttcagcacgtcttcagtcaacactgggttgatgg 17441477  T
Q  325 ttcaaatcaagtcagccagctcatctcat 353  Q
    ||||||||||| |||||||||||||||||    
T  17441478 ttcaaatcaagccagccagctcatctcat 17441506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 17441329 - 17441439
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtag 324  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | | |||||||||||||| ||| | |    
T  17441329 tcaagccagccaactcagcacgtcttcagtcaacactggattgattgttcaagtcaagccagccagctcagcacgtcttcagtcaacactggattgattg 17441428  T
Q  325 ttcaaatcaag 335  Q
    ||||| |||||    
T  17441429 ttcaagtcaag 17441439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 14524864 - 14524793
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttc 213  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||    
T  14524864 aaagaacaaacgtctacgccttaacaggcatgacacttggtggactgtggactgacatgggtagaccatttc 14524793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 14503896 - 14503795
Alignment:
Q  189 tggactggcatgggtaaaccatttccacttgatagttcaagccg-gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagc 287  Q
    ||||||||||| |||| ||||||||||  |||| ||||||| |  ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||    
T  14503896 tggactggcataggtagaccatttccatatgattgttcaagtcaagccagcttagcacgacttcagtcaacactggattgattgttcaagtcaagccagc 14503797  T
Q  288 ca 289  Q
    ||    
T  14503796 ca 14503795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 14487004 - 14486950
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  14487004 aaagaacaaacgtctacgccttaacagacttcacgcttggtggactgtggactgg 14486950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 14524936 - 14524882
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  14524936 aaagaacaaacgtctacgccttaacaggcttaacgcttggtggattgtggactgg 14524882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 17471467 - 17471521
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    |||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||    
T  17471467 aaagaacaaacgtctacgccttaacaagcttcacgtttggtcgactgtggactgg 17471521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 20128123 - 20128023
Alignment:
Q  197 catgggtaaaccatttccacttgatagttcaag-----ccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagc 291  Q
    |||||||| |||||||||| ||||| |||||||     ||  |||||||||||||||||||| ||||||| ||||||||| |||||||||| | ||||||    
T  20128123 catgggtagaccatttccatttgattgttcaagtcaagccatccagctcagcacgtcttcag-caacactagattgattgttcaagtcaagtcggccagc 20128025  T
Q  292 tc 293  Q
    ||    
T  20128024 tc 20128023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 13411524 - 13411466
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgg 201  Q
    |||||||||| ||||| |||| | ||| |||||||||||||||||||||||||| ||||    
T  13411524 aagaacaaacatctacaccttgataggtttgacgcttggtggactgtggactggtatgg 13411466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 347
Target Start/End: Original strand, 17441156 - 17441238
Alignment:
Q  265 ttgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcagccagctca 347  Q
    ||||||| ||||||||||||||||| ||| | | | | |||||||||||||| ||| | |||||| ||||| |||||||||||    
T  17441156 ttgattgttcaagtcaagccagccaactcagcacgtcttcagtcaacactggattgattgttcaagtcaagccagccagctca 17441238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 8821260 - 8821216
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggact 187  Q
    |||||||||||||||||||||||| || |||||| ||||||||||    
T  8821260 aagaacaaacgtctacgccttaaccggtttgacgtttggtggact 8821216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 17471684 - 17471740
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagcca 289  Q
    ||||||||| ||||||||||||||||||| | ||||| | |||| ||||||||||||    
T  17471684 gccagctcaacacgtcttcagtcaacactaggttgatggttcaaatcaagccagcca 17471740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 25407803 - 25407735
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctc 293  Q
    ||||| ||||||||||||| ||| ||||||||| ||||| ||||||  |||||||||||| | ||||||    
T  25407803 tcaagtcggccagctcagctcgtgttcagtcaatactggtttgatttttcaagtcaagccggtcagctc 25407735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 8821193 - 8821145
Alignment:
Q  146 aacaaacgtctacgccttaacaggcttgacgcttggtggactgtggact 194  Q
    |||||||||  ||||||||| ||||||||| ||||||||||| ||||||    
T  8821193 aacaaacgttgacgccttaataggcttgacacttggtggactatggact 8821145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 20128009 - 20127949
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagcca 285  Q
    ||||||| || | ||||||||| |||||||||||||||||| ||| | |||| ||||||||    
T  20128009 tcaagccagctaactcagcacgacttcagtcaacactggatggatagttcaaatcaagcca 20127949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 142 - 347
Target Start/End: Original strand, 20183 - 20388
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaagccggccagctca 241  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||    
T  20183 aaagaacaaacgtctacgccttaacaggcttgatgcttggtggactgtggactggcatgggtagaccattttcatttgatagttcaagccagccagctca 20282  T
Q  242 gcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcagcc 341  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | | |||||||| ||||| ||| | |||||| ||||| |||||    
T  20283 gcacgtcttcagtcaacactggattgattgttcaagtcaagccagccagctcagcacgtcttcagtcaatactggattgattgttcaagtcaagccagcc 20382  T
Q  342 agctca 347  Q
    ||||||    
T  20383 agctca 20388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 225 - 353
Target Start/End: Original strand, 20319 - 20447
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtag 324  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||| |||    
T  20319 tcaagccagccagctcagcacgtcttcagtcaatactggattgattgttcaagtcaagccagccagctcagtacgccttcagtcaacactgggttgatag 20418  T
Q  325 ttcaaatcaagtcagccagctcatctcat 353  Q
    |||||||||||||||||||||||||||||    
T  20419 ttcaaatcaagtcagccagctcatctcat 20447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 20111 - 20165
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20111 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 20165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 20039 - 20091
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggact 194  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20039 aaagaacaaacgtttacgccttaacaggcttgacgcttggtggactgtggact 20091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 189 - 353
Target Start/End: Original strand, 31954355 - 31954519
Alignment:
Q  189 tggactggcatgggtaaaccatttccacttgatagttcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagcc 288  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31954355 tggactggcatgggtaaaccattttcatttgatagttcaagccagccagctcagcacgtcttcagtcaacactggattgattgttcaagtcaagccagcc 31954454  T
Q  289 agctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcagccagctcatctcat 353  Q
    ||||| ||| ||| |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  31954455 agctcagtacgccttcagtcaacactgggttgatagttcaaatcaagccagccagctcatctcat 31954519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 189 - 347
Target Start/End: Original strand, 40137274 - 40137432
Alignment:
Q  189 tggactggcatgggtaaaccatttccacttgatagttcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagcc 288  Q
    |||||||||||||||| ||||| |||| ||||||||||||||  |||||||| |||||||||||||||||||||||||||||| |||||||||| |||||    
T  40137274 tggactggcatgggtagaccatctccatttgatagttcaagctagccagctcggcacgtcttcagtcaacactggattgattgttcaagtcaagtcagcc 40137373  T
Q  289 agctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcagccagctca 347  Q
    ||||| | | | | |||||||||||||||||| |||||||||||||| |||||||||||    
T  40137374 agctcagcacgtcttcagtcaacactgggttgatagttcaaatcaagccagccagctca 40137432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 40137416 - 40137538
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtag 324  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| ||| | | |||||||||||||||||| |||    
T  40137416 tcaagccagccagctcagcacgtcttcagtcgacactggattgattgttcaagtcaagtcagccagctcagtacgtcttcagtcaacactgggttgatag 40137515  T
Q  325 ttcaaatcaagtcagccagctca 347  Q
    ||||||||||| |||||||||||    
T  40137516 ttcaaatcaagccagccagctca 40137538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 40137477 - 40137597
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatc 332  Q
    |||||||||| |||||||||||||||||||| ||||| | |||| |||||||||||||||| ||| | | |||||||||||||||||| ||||| ||||     
T  40137477 gccagctcagtacgtcttcagtcaacactgggttgatagttcaaatcaagccagccagctcagtacgtcttcagtcaacactgggttgatagtttaaatt 40137576  T
Q  333 aagtcagccagctcatctcat 353  Q
    ||| |||||||||||||||||    
T  40137577 aagccagccagctcatctcat 40137597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 25242833 - 25242902
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  25242833 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatggatagaccatt 25242902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 233 - 347
Target Start/End: Original strand, 40137371 - 40137485
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatc 332  Q
    ||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||||| | | | | |||||| ||||||| ||| | |||||| ||    
T  40137371 gccagctcagcacgtcttcagtcaacactgggttgatagttcaaatcaagccagccagctcagcacgtcttcagtcgacactggattgattgttcaagtc 40137470  T
Q  333 aagtcagccagctca 347  Q
    |||||||||||||||    
T  40137471 aagtcagccagctca 40137485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 24826159 - 24826213
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24826159 aaagaacaaacgtctacgccttaacaggctagacgcttggtggactgtggactgg 24826213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 24826289 - 24826355
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagc 291  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||    
T  24826289 tcaagccagccagctcagcacgtcttcagtcgacactggattgattgttcaagtcaagcccgccagc 24826355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 25242958 - 25243017
Alignment:
Q  234 ccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctc 293  Q
    |||||||| |||||| |||||||||||||| ||||||| |||||||||| ||||||||||    
T  25242958 ccagctcatcacgtcctcagtcaacactggtttgattgttcaagtcaagtcagccagctc 25243017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 40137522 - 40137590
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctc 293  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||| | | || | ||||||||||||||    
T  40137522 tcaagccagccagctcagtacgtcttcagtcaacactgggttgatagtttaaattaagccagccagctc 40137590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 353
Target Start/End: Original strand, 24826268 - 24826368
Alignment:
Q  257 acactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtc----agccagctcatctca 352  Q
    ||||||||||||||| ||||||||||||||||||||| | | | | |||||| ||||||| ||| | |||||| ||||| |    |||||||||||||||    
T  24826268 acactggattgattgttcaagtcaagccagccagctcagcacgtcttcagtcgacactggattgattgttcaagtcaagcccgccagccagctcatctca 24826367  T
Q  353 t 353  Q
    |    
T  24826368 t 24826368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 20634463 - 20634521
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgg 201  Q
    ||||||||| |||||||||||||||| |||||| ||||||| ||| |||||||| ||||    
T  20634463 aagaacaaaagtctacgccttaacagacttgacacttggtgaactatggactggtatgg 20634521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 23998428 - 23998461
Alignment:
Q  159 gccttaacaggcttgacgcttggtggactgtgga 192  Q
    ||||||||||||||||||||||||||||||||||    
T  23998428 gccttaacaggcttgacgcttggtggactgtgga 23998461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 24826231 - 24826262
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttg 173  Q
    ||||||||||||||||||||||||||||||||    
T  24826231 aaagaacaaacgtctacgccttaacaggcttg 24826262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 25242768 - 25242823
Alignment:
Q  148 caaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggt 203  Q
    ||||||||||| | |||||||||||| ||||||||||| ||||||| || ||||||    
T  25242768 caaacgtctacactttaacaggcttggcgcttggtggattgtggaccggtatgggt 25242823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 25242972 - 25243018
Alignment:
Q  301 cctcagtcaacactgggttggtagttcaaatcaagtcagccagctca 347  Q
    |||||||||||||||| ||| | |||||| |||||||||||||||||    
T  25242972 cctcagtcaacactggtttgattgttcaagtcaagtcagccagctca 25243018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 25243010 - 25243071
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggatt-gattggtcaagtcaagccagccagctc 293  Q
    |||||||||||||||||| ||||| |||||| ||  |||| |||||||| ||||||||||||    
T  25243010 gccagctcagcacgtctttagtcagcactggtttaaattgttcaagtcatgccagccagctc 25243071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 44079247 - 44079194
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    |||||||||||| || ||||| |||||||||||| ||||||||| || ||||||    
T  44079247 aagaacaaacgtatatgccttgacaggcttgacgtttggtggacagtagactgg 44079194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 142 - 293
Target Start/End: Complemental strand, 4109519 - 4109369
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaagccggccagctca 241  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| || |||| ||||||| |||| ||||    
T  4109519 aaagaacaaacgtctacgccttcacaggcttgacgcttggtggactgtggactggcatgggtagaccattcccatttcatag-tcaagccagccaactca 4109421  T
Q  242 gcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctc 293  Q
     ||||||||||||| |||  |||||||||| ||||||||||||| |||||||    
T  4109420 acacgtcttcagtcgacatgggattgattgttcaagtcaagccaaccagctc 4109369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 45108338 - 45108201
Alignment:
Q  160 ccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaa-----gccggccagctcagcacgtcttcagt 254  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||||| | ||||||     ||| ||||||||||| | ||||||||    
T  45108338 ccttaacaggcttgacgcttggtggactgtggactggcatggatagacca-ttctacttggttgttcaagtcaggccagccagctcagctcatcttcagt 45108240  T
Q  255 caacactggattgattggtcaagtcaagccagccagctc 293  Q
    ||||||||| ||||||| |||| ||| ||||||||||||    
T  45108239 caacactggtttgattgttcaaatcaggccagccagctc 45108201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 37349424 - 37349505
Alignment:
Q  210 tttccacttgatagttcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagc 291  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  37349424 tttccatttgatagttcaagccagtcagctcagcacgtcttcagtcgacactcgattgattgttcaagtcaagccagccagc 37349505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 4109591 - 4109537
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4109591 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 4109537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 4109685 - 4109631
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  4109685 aaagaacaaacgtctacgtcttcacaggcttgacgcttggtggactgtggactgg 4109631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 37349331 - 37349385
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  37349331 aaagaacaaacgtctacgccttaacaggcttgacacttggtgaactgtggactgg 37349385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 45108462 - 45108401
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggt 203  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||| | ||||||    
T  45108462 aaagaacaaacgtctacaccttaacaggcttgacgcttggtggactatggactagtatgggt 45108401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 45108180 - 45108120
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctc 293  Q
    ||||||||||| |||||||||||||||||||||||| || |||||||| ||||||||||||    
T  45108180 gccagctcagctcgtcttcagtcaacactggattgactgttcaagtcaggccagccagctc 45108120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 45108391 - 45108340
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggac 193  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  45108391 aaagaacaaacgtctacaccttaacagccttgacgcttggtggactgtggac 45108340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 45110152 - 45110106
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactg 188  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||    
T  45110152 aaagaacaaacgtctacgtcttaacaggcttgacgtttggtggactg 45110106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 4109384 - 4109322
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagc 287  Q
    |||||||  |||||||||||||||||||||  |||  |||||||||| |||||||||||||||    
T  4109384 tcaagccaaccagctcagcacgtcttcagttgacatgggattgattgttcaagtcaagccagc 4109322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 13968613 - 13968674
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtc-aagtcaagccagccagctc 293  Q
    ||||||||||| ||||||| ||||||||||| ||||||| || |||||| ||||||||||||    
T  13968613 gccagctcagctcgtcttccgtcaacactggcttgattgttcaaagtcatgccagccagctc 13968674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 25057292 - 25057243
Alignment:
Q  147 acaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    ||||||||||| || |||||||||||||| |||| |||||||||||||||    
T  25057292 acaaacgtctatgctttaacaggcttgacacttgatggactgtggactgg 25057243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 5168875 - 5168922
Alignment:
Q  141 caaagaacaaacgtctacgccttaacaggcttgacgcttggtggactg 188  Q
    |||| ||||||||| |||||||||||| |||||| |||||||||||||    
T  5168875 caaaaaacaaacgtttacgccttaacaagcttgatgcttggtggactg 5168922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 4109327 - 4109273
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagc 287  Q
    ||||||||||||| |||||| || ||||  ||||||||| |||||||||||||||    
T  4109327 gccagctcagcacatcttcaatcgacacgagattgattgttcaagtcaagccagc 4109273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 28388661 - 28388714
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    |||||||||  |||||| ||| |||| ||||||||||||||||||||| |||||    
T  28388661 aagaacaaatttctacgtcttgacagacttgacgcttggtggactgtgaactgg 28388714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 45109896 - 45109839
Alignment:
Q  236 agctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctc 293  Q
    |||||||| ||||||||||||||| ||| |||| || |||||| | ||||||||||||    
T  45109896 agctcagctcgtcttcagtcaacattggtttgactgttcaagttaggccagccagctc 45109839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 45109934 - 45109897
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgatt 270  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  45109934 gccagctcagctcgtcttcagtcaacactggtttgatt 45109897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 45110064 - 45110012
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagcca 285  Q
    ||||||||||| ||||||||||||||||||  ||||||| |||| ||| ||||    
T  45110064 gccagctcagctcgtcttcagtcaacactgatttgattgttcaaatcaggcca 45110012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 142 - 289
Target Start/End: Complemental strand, 16990810 - 16990658
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagt-----tcaagccggcca 236  Q
    |||||||||| |||||||| |||||||||||||||||||||||| ||||||||  |||||||| ||||||| || ||||| ||     ||||||| ||||    
T  16990810 aaagaacaaatgtctacgctttaacaggcttgacgcttggtggattgtggactaacatgggtagaccattttcatttgattgttcaagtcaagccagcca 16990711  T
Q  237 gctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagcca 289  Q
    ||| | ||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  16990710 gctaaacacgtcttcagccaacactggattgattgttcaagtcaagtcagcca 16990658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 16990608 - 16990548
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctc 293  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  16990608 gccagcttagcacgtcttcagtcaacactggattgattgttcaagtcaagccagtcagctc 16990548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 16990654 - 16990541
Alignment:
Q  240 cagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaagtcag 339  Q
    ||||||||||||| |||||||| |||||| || | |||||||| |||||||||  | | | | |||||||||||||| ||| | |||||| ||||| |||    
T  16990654 cagcacgtcttcaatcaacacttgattgaatgttaaagtcaaggcagccagcttagcacgtcttcagtcaacactggattgattgttcaagtcaagccag 16990555  T
Q  340 ccagctcatctcat 353  Q
     |||||||||||||    
T  16990554 tcagctcatctcat 16990541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 38471688 - 38471775
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccatttccacttgatagttcaag 229  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||||| || ||||| |||||||    
T  38471688 aaagaaaaaacgtctacaccttaacaggcttgacgcttggtggactgtggactgacatggatagaccattttcatttgattgttcaag 38471775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 22860314 - 22860383
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcg 294  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||    
T  22860314 tcaagccggccagctcagcacgtcttcaatcaacactggtttgattggtcaagtctagccagccaactcg 22860383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 31678759 - 31678829
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggtaaaccattt 212  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||    
T  31678759 aaagaataaacgtctacgccttaacaggcttgacacttggtggactgtggactgacatggatgaaccattt 31678829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 28298049 - 28297990
Alignment:
Q  235 cagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcg 294  Q
    |||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  28298049 cagctcagcatgtcttcagtcaacactggtttgattgttcaagtcaagccagccagctcg 28297990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 38471617 - 38471678
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgggt 203  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| | ||||| ||||||    
T  38471617 aaagaacaaacgtctacgccttaacaggctcgacacttggtggactgcgaactggtatgggt 38471678  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 347
Target Start/End: Original strand, 22860165 - 22860277
Alignment:
Q  235 cagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcggtatgccctcagtcaacactgggttggtagttcaaatcaa 334  Q
    ||||||||||||||||||||||| ||||  ||||||| |||||||||| ||||||||||   |     |||||||||||||| ||| | |||| ||||||    
T  22860165 cagctcagcacgtcttcagtcaatactgatttgattgttcaagtcaagtcagccagctcaacacattttcagtcaacactggtttgattgttccaatcaa 22860264  T
Q  335 gtcagccagctca 347  Q
    | |||||||||||    
T  22860265 gccagccagctca 22860277  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 22860261 - 22860329
Alignment:
Q  225 tcaagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctc 293  Q
    ||||||| ||||||||| |||||||| | |||||||||| ||||||| |||||||||||| ||||||||    
T  22860261 tcaagccagccagctcaacacgtctttactcaacactggtttgattgttcaagtcaagccggccagctc 22860329  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 22875974 - 22876033
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgg 201  Q
    ||||||||||||| ||||||||||| | ||||||||||||||||| || |||||||||||    
T  22875974 aaagaacaaacgtttacgccttaactgacttgacgcttggtggaccgtagactggcatgg 22876033  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 28298399 - 28298316
Alignment:
Q  23 ggtacaaggatgggacaagacatgataa-aggacaaataagtttgaatcaaatcagtgttcacaactcggttacgaactagtta 105  Q
    ||||||| |||||||||||||||||| | | ||||| |||||||||||||| || ||||| | ||| |||||||||||||||||    
T  28298399 ggtacaatgatgggacaagacatgatgacatgacaattaagtttgaatcaagtcggtgttgataacccggttacgaactagtta 28298316  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 38471836 - 38471901
Alignment:
Q  227 aagccggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagct 292  Q
    ||||| ||||||||||||| || |||||||||||| ||||||||  ||||||||||| ||||||||    
T  38471836 aagccagccagctcagcacatcctcagtcaacactagattgattattcaagtcaagctagccagct 38471901  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 5539204 - 5539146
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactggcatgg 201  Q
    |||||||||||||||||  ||||||| |||| ||||||||||| |||||||||| ||||    
T  5539204 aagaacaaacgtctacgttttaacagacttgtcgcttggtggattgtggactggtatgg 5539146  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 38471895 - 38471956
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctcg 294  Q
    ||||||| ||||| ||| || ||||| |||| ||||||| ||||||||||||||||||||||    
T  38471895 gccagcttagcacctctgcaatcaacgctggtttgattgttcaagtcaagccagccagctcg 38471956  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 22860216 - 22860276
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctc 293  Q
    ||||||||| ||| | ||||||||||||||| ||||||| || | ||||||||||||||||    
T  22860216 gccagctcaacacattttcagtcaacactggtttgattgttccaatcaagccagccagctc 22860276  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 7644063 - 7644113
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtgga 192  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  7644063 aaagaacaaacgtctacgccttaacatgcttgacgcttggtggactatgga 7644113  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 7643993 - 7644046
Alignment:
Q  142 aaagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactg 195  Q
    ||||||||||||||||||||||||||  ||||||| ||| ||||||||||||||    
T  7643993 aaagaacaaacgtctacgccttaacaaacttgacgtttgatggactgtggactg 7644046  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 41088041 - 41087988
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    ||||||||||||||||||||| || | ||||||| |||||||||||||||||||    
T  41088041 aagaacaaacgtctacgccttgacggacttgacgtttggtggactgtggactgg 41087988  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 7352201 - 7352147
Alignment:
Q  233 gccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagc 287  Q
    ||||||||||| ||||||||||||||| ||| ||||||| |||||||| ||||||    
T  7352201 gccagctcagcccgtcttcagtcaacattggtttgattgttcaagtcaggccagc 7352147  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 27120830 - 27120880
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggac 193  Q
    ||||||||||||||||  |||  ||||||||| ||||||||||||||||||    
T  27120830 aagaacaaacgtctacatcttggcaggcttgatgcttggtggactgtggac 27120880  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 41088112 - 41088062
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggac 193  Q
    ||||||||||||||||| ||| ||| | ||||||||||||||||| |||||    
T  41088112 aagaacaaacgtctacgtcttgacatgtttgacgcttggtggactatggac 41088062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 41092853 - 41092803
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggac 193  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||| |||||    
T  41092853 aagaacaaacgtctacgccttgacatgtttgacacttggtggactatggac 41092803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 7352153 - 7352092
Alignment:
Q  232 ggccagctcagcacgtcttcagtcaacactggattgattggtcaagtcaagccagccagctc 293  Q
    |||||||||||  |||||||| |||||||||| ||||  | |||||||| ||||||||||||    
T  7352153 ggccagctcagttcgtcttcaatcaacactggtttgacagttcaagtcaggccagccagctc 7352092  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 41092782 - 41092729
Alignment:
Q  143 aagaacaaacgtctacgccttaacaggcttgacgcttggtggactgtggactgg 196  Q
    ||||||||||||||||||||| || | ||||| | |||||||| ||||||||||    
T  41092782 aagaacaaacgtctacgccttgacggacttgatgtttggtggattgtggactgg 41092729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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