View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4454_low_2 (Length: 360)
Name: NF4454_low_2
Description: NF4454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4454_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 88 - 357
Target Start/End: Complemental strand, 43787462 - 43787193
Alignment:
| Q |
88 |
tgatttttcgaagtttatcattaaggagaaatggctaatagttataaaacaannnnnnnngttgaaagaattataaaacaaaatattgtaaagtaattag |
187 |
Q |
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| T |
43787462 |
tgatttttcgaagtttatcattaaggagaaatggctaatagttataaaacaatttttttgttgaaaagaattataaaacaaaatattgtaaagtaattag |
43787363 |
T |
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| Q |
188 |
aaatatttgaataatgtgtttgcaagaaggaaattttcgctttcagtagcccacaaagtctccaacctaatctgtattttctattccttttcatggctac |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43787362 |
aaatatttgaataatgtgtttgcaagaaggaaattttcgctttcagtagcccacaaagtctccaacctaatctgtattttctattccttttcatggctac |
43787263 |
T |
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| Q |
288 |
ctaatctgagttgaagtatagtacttttccaaatgaataatgtcataggaatattaagtattatctaccc |
357 |
Q |
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| T |
43787262 |
ctaatctgagttgaagtatagtacttttccaaatgaataatgtcataggaatattaagtattaactaccc |
43787193 |
T |
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