View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4454_low_7 (Length: 244)

Name: NF4454_low_7
Description: NF4454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4454_low_7
NF4454_low_7
[»] chr5 (7 HSPs)
chr5 (1-223)||(12531413-12531635)
chr5 (1-223)||(12546984-12547206)
chr5 (1-217)||(9894571-9894785)
chr5 (1-136)||(9866642-9866777)
chr5 (23-131)||(9869994-9870102)
chr5 (42-160)||(38735501-38735619)
chr5 (1-69)||(12538673-12538741)
[»] chr2 (5 HSPs)
chr2 (1-223)||(13576269-13576491)
chr2 (11-202)||(34571441-34571632)
chr2 (18-121)||(34562654-34562757)
chr2 (47-202)||(34578945-34579100)
chr2 (47-202)||(34584694-34584849)
[»] chr7 (3 HSPs)
chr7 (18-220)||(21317498-21317700)
chr7 (1-217)||(3929946-3930162)
chr7 (3-220)||(3928596-3928813)
[»] scaffold0197 (1 HSPs)
scaffold0197 (18-220)||(30936-31137)
[»] chr8 (8 HSPs)
chr8 (18-224)||(43479676-43479882)
chr8 (12-205)||(25865639-25865832)
chr8 (21-202)||(26592110-26592291)
chr8 (21-202)||(38799437-38799618)
chr8 (21-202)||(38821899-38822080)
chr8 (18-205)||(41943883-41944070)
chr8 (21-121)||(44343978-44344078)
chr8 (1-94)||(38807046-38807139)
[»] chr4 (5 HSPs)
chr4 (1-202)||(24860488-24860689)
chr4 (14-184)||(34748715-34748885)
chr4 (42-160)||(53290720-53290838)
chr4 (150-200)||(44771103-44771153)
chr4 (27-118)||(40036062-40036153)
[»] chr1 (3 HSPs)
chr1 (12-121)||(7594127-7594236)
chr1 (87-168)||(17769233-17769314)
chr1 (87-165)||(1539185-1539263)
[»] chr3 (1 HSPs)
chr3 (87-168)||(27440873-27440954)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12531635 - 12531413
Alignment:
Q  1 ctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12531635 ctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagata 12531536  T
Q  101 agcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatgga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  12531535 agcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatgga 12531436  T
Q  201 agcttccttatcagaagctcggt 223  Q
    ||||||||||| |||||||||||    
T  12531435 agcttccttataagaagctcggt 12531413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12546984 - 12547206
Alignment:
Q  1 ctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagata 100  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12546984 ctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagata 12547083  T
Q  101 agcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatgga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  12547084 agcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatgga 12547183  T
Q  201 agcttccttatcagaagctcggt 223  Q
    ||||||||||| |||||||||||    
T  12547184 agcttccttataagaagctcggt 12547206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 9894785 - 9894571
Alignment:
Q  1 ctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagata 100  Q
    |||||||||||||||| |||| ||||||||| | ||| |||||||| | |||||||||||| || || | ||||||||| |||||||||| ||||| | |    
T  9894785 ctctgattctgcgagcaagttcaatatcctt-gccataatagtaactcacttagcatgaatagcgcaaatattagtatcttcaaacaaactaacaaaaca 9894687  T
Q  101 agcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatgga 200  Q
    ||||||| || ||||||||| ||||||||||||||| || ||||| |  ||| | || ||| |||||||||| ||||| |  ||||||||||| || |||    
T  9894686 agcttcaacaacttcttgaacagcagaaacagcactactctggaacctcagaccagtcttg-aatcctgagcaatttccctcacaagtctctgaaacgga 9894588  T
Q  201 agcttccttatcagaag 217  Q
    ||||||||||| |||||    
T  9894587 agcttccttattagaag 9894571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9866642 - 9866777
Alignment:
Q  1 ctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagata 100  Q
    ||||||||||   ||||||||| || |||| |||||| |||||||| |||||||||||||| ||||| || |||||||| ||||||||||||||||||||    
T  9866642 ctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaacaagata 9866741  T
Q  101 agcttcagcagcttcttgaagagcagaaacagcact 136  Q
      ||| ||||||||||||||||||||||||| ||||    
T  9866742 gtctttagcagcttcttgaagagcagaaacatcact 9866777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 9870102 - 9869994
Alignment:
Q  23 aatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaaga 122  Q
    ||||||||||||||| |||||||| |||||||||||||| || || |||||| |||| | |||||||||||||| |||||||||| ||||||||||||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaaga 9870003  T
Q  123 gcagaaaca 131  Q
     || |||||    
T  9870002 ccataaaca 9869994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 38735619 - 38735501
Alignment:
Q  42 gtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgcttt 141  Q
    |||||||||||||||||||| | ||| || |||||||| ||||||||||||||||||||| |||||    ||| ||||||||||||||||||  |||| |    
T  38735619 gtaaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagcgttgctat 38735520  T
Q  142 ggaatcgaagatctgtttt 160  Q
    |||| |  |||||||||||    
T  38735519 ggaacctgagatctgtttt 38735501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 12538741 - 12538673
Alignment:
Q  1 ctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacaga 69  Q
    |||||||| |||||| |||||||||| | ||||||||||||||||| |||||||||||||| |||||||    
T  12538741 ctctgattatgcgagtgagttgaatacctttaggcatgatagtaactctcttagcatgaatagcacaga 12538673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13576491 - 13576269
Alignment:
Q  1 ctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagata 100  Q
    |||||||||| |  || |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  13576491 ctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagata 13576392  T
Q  101 agcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatgga 200  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||| ||||| ||||| | ||| |||||||||    
T  13576391 agcttcagcagcttcttgaagagcagaaacagcactgctttgaaaacggagatccgttttgaaatcctgagcaatttctcgaaccaatctttggaatgga 13576292  T
Q  201 agcttccttatcagaagctcggt 223  Q
    ||||||||||| |||||||||||    
T  13576291 agcttccttatgagaagctcggt 13576269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 34571441 - 34571632
Alignment:
Q  11 gcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagca 110  Q
    |||||| |||||||||||||||||||| || |||||||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| ||     
T  34571441 gcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgct 34571540  T
Q  111 gcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaag 202  Q
    ||||| ||||| ||   ||| |||  ||| |||||||| | ||| || |||||||||||||| |||||||||||||| | ||||||||||||    
T  34571541 gcttcctgaagtgcgagaaccgcatggctctggaatcgtaaatccgtcttgaaatcctgagcaatttcacgaacaagacgctggaatggaag 34571632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 34562654 - 34562757
Alignment:
Q  18 agttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttctt 117  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||| |    
T  34562654 agttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcct 34562753  T
Q  118 gaag 121  Q
    ||||    
T  34562754 gaag 34562757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 34578945 - 34579100
Alignment:
Q  47 cctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaat 146  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||| | |||||||||  | ||||| ||||| ||   ||| |||  ||| ||||||    
T  34578945 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaat 34579044  T
Q  147 cgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaag 202  Q
    |  | |||||| ||||||| |||||| |||||||||||||| | ||||||||||||    
T  34579045 ctcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaag 34579100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 34584694 - 34584849
Alignment:
Q  47 cctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaat 146  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||| | |||||||||  | ||||| ||||| ||   ||| |||  ||| ||||||    
T  34584694 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaat 34584793  T
Q  147 cgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaag 202  Q
    |  | |||||| ||||||| |||||| |||||||||||||| | ||||||||||||    
T  34584794 ctcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaag 34584849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 21317700 - 21317498
Alignment:
Q  18 agttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttctt 117  Q
    |||||||||||||||||||| |||||||| |||||||||||||| || || ||||| ||||| ||||||||||||||||||||||||||||| |||||||    
T  21317700 agttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgcttctt 21317601  T
Q  118 gaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaag 217  Q
    |||||||||||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||||||| |  ||||||||||| || |||||||||||    
T  21317600 gaagagcagaaacagcactgctctggaatctgagatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttttcttatcagaag 21317501  T
Q  218 ctc 220  Q
    |||    
T  21317500 ctc 21317498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 3929946 - 3930162
Alignment:
Q  1 ctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagata 100  Q
    |||||||||| |  || |||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  3929946 ctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagata 3930045  T
Q  101 agcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatgga 200  Q
     ||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||    
T  3930046 cgcttcagcagcttcttgaagagcagaaacagcactactctgaaatcgaagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatgga 3930145  T
Q  201 agcttccttatcagaag 217  Q
    || ||||| || |||||    
T  3930146 agtttcctaatgagaag 3930162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 3928596 - 3928813
Alignment:
Q  3 ctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataag 102  Q
    ||||||||||  || |||| ||||||||||||||  |||||||| |||||||||||||| ||||| |||||  |||| |||||||||||||||| | | |    
T  3928596 ctgattctgcatgcaagtttaatatccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatcttcaaacaaaccaacaatacacg 3928695  T
Q  103 cttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaag 202  Q
    |||||||   ||||||||||||||||||||| ||| | |||||||| ||||| |||||||||||||||||||||||| |||| | ||| | ||| |||||    
T  3928696 cttcagcgatttcttgaagagcagaaacagcgctgatctggaatcggagatcagttttgaaatcctgagcgatttcatgaaccaatcttttgaaaggaag 3928795  T
Q  203 cttccttatcagaagctc 220  Q
     ||||| || ||||||||    
T  3928796 tttcctaatgagaagctc 3928813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 31137 - 30936
Alignment:
Q  18 agttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttctt 117  Q
    |||||||||||||||||||| |||||||| |||||||||||||| || || ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  31137 agttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttctt 31038  T
Q  118 gaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaag 217  Q
    |||||||||||||||||||||| |||||||  ||||  |||||||||||||||||||||||||||||||| |  |||||| |||| || |||||||||||    
T  31037 gaagagcagaaacagcactgctctggaatctgagataggttttgaaatcctgagcgatttcacgaacaagacgttggaat-gaagttttcttatcagaag 30939  T
Q  218 ctc 220  Q
    |||    
T  30938 ctc 30936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 43479676 - 43479882
Alignment:
Q  18 agttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttctt 117  Q
    |||||||||||||||||||| || |||||||||||||||||||| || || || |||||||| ||||||||||||||||||||||||||||| |||||||    
T  43479676 agttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggcttctt 43479775  T
Q  118 gaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaag 217  Q
    |||||||||||||||| || || ||||| |  ||||| ||||||||||||||||||||||| | ||| | ||| ||||||||||||||||| || |||||    
T  43479776 gaagagcagaaacagcgctactctggaacctgagatcagttttgaaatcctgagcgatttccctaaccaatctttggaatggaagcttcctgatgagaag 43479875  T
Q  218 ctcggta 224  Q
    |||||||    
T  43479876 ctcggta 43479882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 25865832 - 25865639
Alignment:
Q  12 cgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcag 111  Q
    ||||| || ||||||||||| ||||| || || ||||||||||||||||| ||||| | |||||||||||||||||| || ||||||||||| |||||||    
T  25865832 cgagcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagcag 25865733  T
Q  112 cttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagctt 205  Q
    |||| ||||| |||  |||||||   || || ||||  ||||| ||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  25865732 cttcctgaagtgcaagaacagcatgactctgaaatctcagatccgttttgaaatcctgagcaatttcacgaacaagacgctggaatggaagctt 25865639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 26592291 - 26592110
Alignment:
Q  21 tgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaa 120  Q
    |||||||||||||||||||||||||| | |||||||||||| || ||||| ||||||||||||||||| |||||||||||||| || || |||||||| |    
T  26592291 tgaatatccttaggcatgatagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgca 26592192  T
Q  121 gagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaag 202  Q
    | || || ||||||  ||| || || || ||||| || |||||||||||||| || ||||||||||| | |||||| |||||    
T  26592191 gcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcctgagcaatctcacgaacaagacgctggaaaggaag 26592110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 38799618 - 38799437
Alignment:
Q  21 tgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaa 120  Q
    ||||| |||||||||||||| ||||| |||||||||||||| ||||| || || || || ||||| | |||||| |  ||||||||||||||||||||||    
T  38799618 tgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaa 38799519  T
Q  121 gagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaag 202  Q
    |||| ||||| || ||||| |||||||  |||||||| |||||||| ||||| |||||||||||||| |  |||||||||||    
T  38799518 gagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaag 38799437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 38821899 - 38822080
Alignment:
Q  21 tgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaa 120  Q
    ||||| |||||||||||||| ||||| |||||||||||||| ||||| || || || || ||||| | |||||| |  ||||||||||||||||||||||    
T  38821899 tgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaa 38821998  T
Q  121 gagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaag 202  Q
    |||| ||||| || ||||| |||||||  |||||||| |||||||| ||||| |||||||||||||| |  |||||||||||    
T  38821999 gagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaag 38822080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 41944070 - 41943883
Alignment:
Q  18 agttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttctt 117  Q
    |||||||| ||||| ||||| || |||||||||||||||||||| ||||| | ||| |||||||||||||| ||||| ||||||||||| || ||||| |    
T  41944070 agttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgcttcct 41943971  T
Q  118 gaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagctt 205  Q
    |||| |||  |||||||  ||| |||||||  ||||| || |||||||| ||||| |||||||||||||| |  ||||||||||||||    
T  41943970 gaagtgcaagaacagcatggctctggaatctgagatccgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagctt 41943883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 44344078 - 44343978
Alignment:
Q  21 tgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaa 120  Q
    ||||||||||| ||||| || || ||||||||||||||||| ||||| | ||| |||||||||||||| || || |||||||| ||||| ||||| ||||    
T  44344078 tgaatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttcctgaa 44343979  T
Q  121 g 121  Q
    |    
T  44343978 g 44343978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 38807139 - 38807046
Alignment:
Q  1 ctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaac 94  Q
    |||||||||| |  || |||||||| |||||||||||||||||||| |||||||||||||| || ||  |||| || |||||||| | ||||||    
T  38807139 ctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagcatgaattgcgcacggatttgtgtcctcaaagagaccaac 38807046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 24860689 - 24860488
Alignment:
Q  1 ctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagata 100  Q
    ||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||| || || ||||| ||||| ||||| |  ||||| |||||    
T  24860689 ctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaagagtccaacgagata 24860590  T
Q  101 agcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatgga 200  Q
    ||||||||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||| ||||||||||||||||| || |  |||||||||    
T  24860589 agcttcagcagcttcttgaagagcagaaacagcgctactctggaaacggagatcggttttgaaatcttgagcgatttcacgaacgagacgttggaatgga 24860490  T
Q  201 ag 202  Q
    ||    
T  24860489 ag 24860488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 34748885 - 34748715
Alignment:
Q  14 agcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagct 113  Q
    |||||| || |||||||||||||||||||| || | ||| ||||||||||||||||| |||||||||||||| | |||||| |||||||| ||||| |||    
T  34748885 agcgagctggatatccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgct 34748786  T
Q  114 tcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaac 184  Q
    ||||| || || || || ||   ||| ||||| || ||||| || ||||||||||||||||| ||||||||    
T  34748785 tcttgcagcgccgacacggcggagctctggaaacggagatcagtcttgaaatcctgagcgatctcacgaac 34748715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 53290838 - 53290720
Alignment:
Q  42 gtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgcttt 141  Q
    |||| ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |  ||| |||||||||||||||| |  |||| |    
T  53290838 gtaatcctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaacaacgttgctat 53290739  T
Q  142 ggaatcgaagatctgtttt 160  Q
    |||| |  |||||||||||    
T  53290738 ggaacctgagatctgtttt 53290720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 44771103 - 44771153
Alignment:
Q  150 agatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatgga 200  Q
    ||||| |||||||||||||||||||||||||||||||| |  |||||||||    
T  44771103 agatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatgga 44771153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 40036153 - 40036062
Alignment:
Q  27 tccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttg 118  Q
    ||||| ||||| |||||||| | ||| ||||| || ||||| |  ||||| |||||||| | |||||||||||| ||||||||||| |||||    
T  40036153 tccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 40036062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 7594127 - 7594236
Alignment:
Q  12 cgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcag 111  Q
    ||||| || ||||||||||| ||||| || || ||||||||||||||||| ||||| ||||| || ||||||||||| ||||| || ||||| ||||| |    
T  7594127 cgagcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaatccaaccaggtaagcctcagctg 7594226  T
Q  112 cttcttgaag 121  Q
    |||| |||||    
T  7594227 cttcctgaag 7594236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 17769233 - 17769314
Alignment:
Q  87 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcct 168  Q
    |||||||||||||||||| ||   |||||||||||||||||||||| ||| || |  ||||| |||||||||||||||||||    
T  17769233 aaaccaacaagataagctacactggcttcttgaagagcagaaacagtactactctaaaatcggagatctgttttgaaatcct 17769314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 1539185 - 1539263
Alignment:
Q  87 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaat 165  Q
    |||||||||||||||||| ||   ||||||||||||| |||||||| ||| || |  ||||| ||||||||||||||||    
T  1539185 aaaccaacaagataagctacactggcttcttgaagagaagaaacagtactactctaaaatcggagatctgttttgaaat 1539263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 27440954 - 27440873
Alignment:
Q  87 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcct 168  Q
    |||||||||||||||||| ||   |||||||||||||||||||||   || || |  ||||| |||||||||||||||||||    
T  27440954 aaaccaacaagataagctacactggcttcttgaagagcagaaacaatgctactctaaaatcggagatctgttttgaaatcct 27440873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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