View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455-Insertion-1 (Length: 1065)
Name: NF4455-Insertion-1
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 864; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 864; E-Value: 0
Query Start/End: Original strand, 59 - 1058
Target Start/End: Original strand, 26515078 - 26516081
Alignment:
| Q |
59 |
catggaatggcagtgtctcattcatgatgctccaaaccatgtacttattcatgcatttcaatcttatggcgtcagtaaaacttgcacagcttcaaatttt |
158 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515078 |
catggaatggtagtgtctcattcatgatgctccaaaccatgtacttatttatgcatttcaatcttatggcgtcagtaaaacttgcacagcttcaaatttt |
26515177 |
T |
|
| Q |
159 |
caactataataatttcatgcttacttgataattcaaagttacattttcagtttgacctaaaagtacggtgacaggtcatgaccggaatcttcatgtgtac |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26515178 |
caactataataatttcatgcttacttgataattcaaagttacattttcagtttgacctaaaagtacggcgacaggtcatgaccggaatcttcatgtgtac |
26515277 |
T |
|
| Q |
259 |
agcagcatactaccagttcagggagagtcaatggcttatgnnnnnnntatattatttccaactgaaaaaatatttatattctcatacattaatattccaa |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515278 |
agcagcatactaccagttcagggagagtcaatggcttatgaaaaaaatatattatttccaactgaaaaaatatttatattctcatacattaatattccaa |
26515377 |
T |
|
| Q |
359 |
ttgcctacatttggtgtgcaacattgcttccaacaggattaccacaacttcagctaataatagttttagtccaagtctggctacattttttcgactaaat |
458 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515378 |
ttgcctacatttggtgtgcaacattgcttccaacaggattaccacaacttcagctaataatagttttagtccaagtctggctacattttttcgactaaaa |
26515477 |
T |
|
| Q |
459 |
gtatgtatgttcttaatcggaatagttttaaacagcagaaaagagtatgtatatcacgtcaaattgcataatccacatactataaagagaagaaacaaaa |
558 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515478 |
gtatgtatgttcttaatcggaatagttttaaacagcagaaaagagtatgtatatcacgtcaaattgcataatccacatactataaagagaagaaacaaaa |
26515577 |
T |
|
| Q |
559 |
caaaaagcagttgtgaaataagtaatcacaaaaagtttgagcactgcaaaccaagagtccaccatagaaatatttttccaaaatacagtctaatggaatt |
658 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515578 |
caaaaagcagttgtgaaataagtaatcacaaaaagtttgagcactgcaaaccaagagtccaccatagaaatatttttccaaaatacagtctaatggaatt |
26515677 |
T |
|
| Q |
659 |
ataaatcattatagaaggctcacaagttacaccaattagacctgaactcgatgcatttcacgatatagccttagtaaattccaaattatgctaaagtata |
758 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26515678 |
gcaaatcattatagaaggctcacaagttacaccaattagacctgaactcgatgcatttcacgatattgccttagtaaattccaaattatgctaaagtata |
26515777 |
T |
|
| Q |
759 |
agcctgattaaagagcatgcaatcattgatcacctcccaaattacccataaaatcatatgattaatcatttctaacgattctgataaactgtttccgcca |
858 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515778 |
agcctgattaaagagcatgcaatcattgatca-cttccaaattacccataaaatcatatgattaatcatttctaacgattctgataaactgtttccgcca |
26515876 |
T |
|
| Q |
859 |
acaacggtatattggcgcccgcaatcaatttctaaataacttcagttatatttaatttatatatcatctatagcacagtcagtaacaacc-aaagaagga |
957 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
26515877 |
agaacggtatattggcgcccgcaatcaatttctaaataacttcagttatatttaatttatatatcatctatagcacagtcagtaacaaccaaaagaagaa |
26515976 |
T |
|
| Q |
958 |
agnnnnnnnntgaacgcaaagtttagcttggaaagtaagac-actcatcactgaaattgcgcacc-accta-tttcagttattttcttcccttc-tggca |
1053 |
Q |
| |
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| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
26515977 |
aagaaaaaaatgaaagcaaagtttagcttggaaagtaagacaactcatcactgaaattgcgcaccaacctattttcagttattttcttcccttcttggca |
26516076 |
T |
|
| Q |
1054 |
gaggc |
1058 |
Q |
| |
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||||| |
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| T |
26516077 |
gaggc |
26516081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 694 - 834
Target Start/End: Original strand, 30372090 - 30372230
Alignment:
| Q |
694 |
ttagacctgaactcgatgcatttcacgatatagccttagtaaattccaaattatgctaaagtataagcctgattaaagagcatgcaatcattgatcacct |
793 |
Q |
| |
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|||||||||||| | ||||| ||||||||| ||||| ||||||| |||| ||||| ||||||||||||||||| ||||||| ||||||||| |||||| |
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| T |
30372090 |
ttagacctgaacccagtgcatctcacgatatggccttgataaattcaaaataatgctgaagtataagcctgattatagagcatacaatcattgttcacct |
30372189 |
T |
|
| Q |
794 |
cccaaattacccataaaatcatatgattaatcatttctaac |
834 |
Q |
| |
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|| | ||||||||||||||||||| ||||| |||||||||| |
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| T |
30372190 |
ccaatattacccataaaatcatatcattaaccatttctaac |
30372230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 974 - 1049
Target Start/End: Original strand, 30372417 - 30372495
Alignment:
| Q |
974 |
caaagtttagcttggaaagtaagaca-ctcatcactgaaattgcgcacc-accta-tttcagttattttcttcccttct |
1049 |
Q |
| |
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|||| ||| |||||||||||| || | |||||||||||||||| ||||| ||||| |||||||||||| |||||||||| |
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| T |
30372417 |
caaaatttggcttggaaagtaggaaaactcatcactgaaattgtgcaccaacctattttcagttatttccttcccttct |
30372495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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