View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455-Insertion-10 (Length: 363)
Name: NF4455-Insertion-10
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 159 - 363
Target Start/End: Complemental strand, 26217187 - 26216983
Alignment:
| Q |
159 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcagcaaatagaaactcattatccatactagtgaatagtgatagatggattaatggc |
258 |
Q |
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| T |
26217187 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcggcaaatagaaactcattatccatactagtgaatagtgttagatggattaatggt |
26217088 |
T |
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| Q |
259 |
attaagaatcgcctcactggagctattctgcttttaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccacgttctacatattgtg |
358 |
Q |
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| T |
26217087 |
attaagaatcgcctcactggtgctattctgcttctaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccgcgttctacatattgtg |
26216988 |
T |
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| Q |
359 |
ccatc |
363 |
Q |
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| T |
26216987 |
ccatc |
26216983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 26217401 - 26217246
Alignment:
| Q |
7 |
actttatagagcacattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagcttgtaattaggctaggaggaaaga |
106 |
Q |
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| T |
26217401 |
actttatagagcacattacataaagctatagatgaataaacctctcctatagggattagatcaatgtttgttgagtttgtaattaggctaggaggaaaga |
26217302 |
T |
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| Q |
107 |
taacagagaccttcaaagtgcaacccgcagtaaatatatcatgaccacaatttttc |
162 |
Q |
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| T |
26217301 |
taacagagaccttcaaagtgcaacccgcagtaaatatatgatgaccacaatttttc |
26217246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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