View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455-Insertion-11 (Length: 319)
Name: NF4455-Insertion-11
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 52491371 - 52491072
Alignment:
| Q |
8 |
ccattatccttcaatttatttccttcttcaatttcaattacaaccccaattgcagcacaacaacaccctgttttccttcttctttgcttccattattctt |
107 |
Q |
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| T |
52491371 |
ccattatccttcaatttatttccttcttcaatttcaattccaaccctaattgcagcacaacaacaccctgttttccttcttctttgcttccattattctt |
52491272 |
T |
|
| Q |
108 |
cctcacgatttcatagaagagtaatacgnnnnnnnttcagatctgcaattcattcatccatgtttcttcttctttcaagcagccgtcacaagagccgcaa |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
52491271 |
cctcacgatttcatagaagagtaatacgaaaaaaattcagatctgcaattcattcatccacgtttcttcttctttcaagcagctgtcacaagagccgcaa |
52491172 |
T |
|
| Q |
208 |
ggttcatttcaccgccccaccaaacgttcgtcgtgtgttgattagcgcacctctctccggtaaccttcgttcaaagtacaacgtgtgttctcttcccgtt |
307 |
Q |
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| T |
52491171 |
ggttcatttcaccgccccatcaaacgtccgtcgtgtgttgattagcgcacctctctctggtgaccttcgttcaaagtacatcgtgcgttctcttcccgtt |
52491072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 21946068 - 21946304
Alignment:
| Q |
17 |
ttcaatttatttccttcttcaatttcaattacaaccccaattgcagcacaacaaca---ccctgttttccttcttctttgcttccattattcttcctcac |
113 |
Q |
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| T |
21946068 |
ttcaatttatttccttctttaatttcaattccaaccccaattgcagtacaacaacaacaccttgttttc-ttcttctttgcttccattattctttctcac |
21946166 |
T |
|
| Q |
114 |
gatttcatagaagagtaatacgnnnnnnn--ttcagatctgcaattcattcatccatgtttcttcttctttcaagcagccgtcacaagagccgcaaggtt |
211 |
Q |
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| | |||||||||| |||| | ||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
21946167 |
aactccatagaagagaaataagaaaaaaaaattcagatatgcaattcattcagccatgtttcttcttctttcaagcatccgtcgcaagagccgcaaggtt |
21946266 |
T |
|
| Q |
212 |
catttcaccgccccaccaaacgttcgtcgtgtgttgat |
249 |
Q |
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| T |
21946267 |
cattttaccgccacaccaaacgtccgtcgtgtgttgat |
21946304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 5404205 - 5404332
Alignment:
| Q |
180 |
tttcaagcagccgtcacaagagccgcaaggttcatttcaccgccccaccaaacgttcgtcgtgtgttgattagcgcacctctctccggtaaccttcgttc |
279 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||| ||| ||| |||||||||||||| ||||||||||| |||||| |||| ||||| |
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| T |
5404205 |
tttcaagcagccgtcgcaagagccgcaaggctcatttcaccgccccatcaagcgtccgtcgtgtgttgatgagcgcacctctttccggtgacctccgttc |
5404304 |
T |
|
| Q |
280 |
aaagtacaacgtgtgttctcttcccgtt |
307 |
Q |
| |
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||||||||||||| |||||||||||||| |
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| T |
5404305 |
aaagtacaacgtgcgttctcttcccgtt |
5404332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 307
Target Start/End: Complemental strand, 30927232 - 30927076
Alignment:
| Q |
143 |
ttcagatctgcaattcattcatccatgtttcttcttctttcaagcagccgtcacaagagccgcaaggttcatttcaccgccccaccaaacgttcgtcgtg |
242 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||| | | || || ||||||| |
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| T |
30927232 |
ttcagatatgcaattcattcatccatgtttcttcttctttcaagcaaccgtcggaagagccgcaagg------tgaccttctttc--aaagtccgtcgtg |
30927141 |
T |
|
| Q |
243 |
tgttgattagcgcacctctctccggtaaccttcgttcaaagtacaacgtgtgttctcttcccgtt |
307 |
Q |
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||||||| |||| ||||||||||||| |||||| |||||||||||||||| ||||||||||||| |
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| T |
30927140 |
tgttgatgagcgaacctctctccggtgaccttctttcaaagtacaacgtgcattctcttcccgtt |
30927076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 36337328 - 36337278
Alignment:
| Q |
8 |
ccattatccttcaatttatttccttcttcaatttcaattacaaccccaatt |
58 |
Q |
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||||||| ||||||||||||||||||||||||||||||| || |||||||| |
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| T |
36337328 |
ccattattcttcaatttatttccttcttcaatttcaattccagccccaatt |
36337278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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