View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455-Insertion-2 (Length: 987)
Name: NF4455-Insertion-2
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-2 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 879; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 879; E-Value: 0
Query Start/End: Original strand, 7 - 987
Target Start/End: Original strand, 25355023 - 25355992
Alignment:
| Q |
7 |
ataatgcatcaatttagctatagaaaatgcgaaaaagttaaaatcgatgcaggactaaccatccgcgtttgaattctaatacacataatgttaccatgac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355023 |
ataatgcatcaatttagctatagaaaatgagaaaaagttaaaatcgatgcaggactaaccatccgcgtttgaattctaatacacataatgttaccatgac |
25355122 |
T |
|
| Q |
107 |
acgtgttatgtgtgattgataacaaacaacaaacaagaccaaattatgatgttatatcagttacctggattacaaaaccttctactgcttctcctttgtc |
206 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355123 |
acgtgttatgtgtgattgataacaaa-----------------ttatgatgttatatcagttacctggattacaaaaccttctactgcttctcctttgtc |
25355205 |
T |
|
| Q |
207 |
aatggcagcagccatctgaaagccgtagtttccgaaatccaagggatcagcttgaatgttgttgatcatactctgctggagtttctccaaccctattgat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355206 |
aatggcagcagccatctgaaagccgtagtttccgaaatccaagggatcagcttgaatgttgttgatcatactctgctggagtttctccaaccctattgat |
25355305 |
T |
|
| Q |
307 |
agtgcatcttcagcttgctgagatgataaacgcaggttgttaatgctagcaatttgttgatcattcaaattctcaagtttcggtaccacgatctgtaagc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355306 |
agtgcatcttcagcttgctgagatgataaacgcaggttgttaatgctagcaatttgttgatcattcaaattctcaagtttcggtaccacgatctgtaagc |
25355405 |
T |
|
| Q |
407 |
aaaagtcaagtggtttgtacaaaatcattgataggttattacatgtatcaatcgacgctatagaaacatgtcctgaggtttatatgacatgacatgatgt |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25355406 |
aaaagtcaagtggtttgtacaaaatcattgataggttattacatgtatcaatcgacgctatagaaacatgtcctgaggtttatatgacatgacatgatgt |
25355505 |
T |
|
| Q |
507 |
ttaacaatttacaaaacatagaacaaaatttatgccattagtactcctcgtctctagtcaacacacgtttatgatttgtcggctcagtggtaaaagtatg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
25355506 |
ttaacaatttacaaaacatagaacaaaatttatgccattagtactcctcgtctctagtcaacacgcgtttatgatttgtcggctcagtggtaaaagtacg |
25355605 |
T |
|
| Q |
607 |
acc-----atataacctcgagatgagttgatgctag-ttctataagctactgataaagaatgatcaagaatatatcaacaaaatttcaacaaattaagat |
700 |
Q |
| |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25355606 |
accatataatataacctcgagatgagttgatgctagtttctataagctactgataaagaatgatcaagaatatattaacaaaatttcaacaaattaagat |
25355705 |
T |
|
| Q |
701 |
tatataaagctcctatattttgcaaaattaatgaacataaaatataaaaatgagataatagtaattagtggatgtacatttagaatttgtgatggacgag |
800 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25355706 |
tatataaagctcctatattttgcaaaattaatgaacagaaaatataaaaatgagataatagtaattagtggatgtacatttagaatttgtgatggacgag |
25355805 |
T |
|
| Q |
801 |
atcctccgatccaaagaaaaaggcgttcgaccggtgatttccatacgccagagattaaatagaaaacatcagcctttgcagcttcagctttcattctgaa |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355806 |
atcctccgatccaaagaaaaaggcgttcgaccggtgatttccatacgccagagattaaatagaaaacatcagcctttgcagcttcagctttcattctgaa |
25355905 |
T |
|
| Q |
901 |
aagatttgagtattggttcaagctactctcaacaagtagatgaagttgtatatcagatgaattagtttgcaatgcatttcttagttc |
987 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25355906 |
aagatttgagtattggttcaagctactctcaacaagtagatgaagttgtatatcagatgcattagtttgcaatgcatttcttagttc |
25355992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 764 - 987
Target Start/End: Original strand, 25348158 - 25348381
Alignment:
| Q |
764 |
attagtggatgtacatttagaatttgtgatggacgagatcctccgatccaaagaaaaaggcgttcgaccggtgatttccatacgccagagattaaataga |
863 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | ||||||| | |||||||||||||||||| | ||| ||||||||||||||||||||||||| |
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|
| T |
25348158 |
attagtggatgtacatttagaagctgtgatggatggtatcctccaaaccaaagaaaaaggcgttctaacggcttcttccatacgccagagattaaataga |
25348257 |
T |
|
| Q |
864 |
aaacatcagcctttgcagcttcagctttcattctgaaaagatttgagtattggttcaagctactctcaacaagtagatgaagttgtatatcagatgaatt |
963 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25348258 |
aaacatcagtctttgcagcttctgctttcattctgaaaagatttgagtattggttcaagctactctcaacaagtagatgaagttgtatatcagatgcatt |
25348357 |
T |
|
| Q |
964 |
agtttgcaatgcatttcttagttc |
987 |
Q |
| |
|
| | ||||| |||||||||||||| |
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|
| T |
25348358 |
attatgcaaagcatttcttagttc |
25348381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 764 - 987
Target Start/End: Original strand, 25350351 - 25350574
Alignment:
| Q |
764 |
attagtggatgtacatttagaatttgtgatggacgagatcctccgatccaaagaaaaaggcgttcgaccggtgatttccatacgccagagattaaataga |
863 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||| |||||||| | |||||||||||||||||| | ||| |||||| |||||||||||||||| | |
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| T |
25350351 |
attagtggatgtacgtttagaagctgtgacggacaggatcctccaaaccaaagaaaaaggcgttctaacggcttcttccatgcgccagagattaaatata |
25350450 |
T |
|
| Q |
864 |
aaacatcagcctttgcagcttcagctttcattctgaaaagatttgagtattggttcaagctactctcaacaagtagatgaagttgtatatcagatgaatt |
963 |
Q |
| |
|
|| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
25350451 |
aagaatcaatctttgcagcttctgctttcattctgaaaagatttgagtattggttcaagctactctcgacaagtagatgaagttgtatatcagatgcatt |
25350550 |
T |
|
| Q |
964 |
agtttgcaatgcatttcttagttc |
987 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
25350551 |
agtttgcaatgcatttcttagttc |
25350574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 167 - 422
Target Start/End: Original strand, 25349480 - 25349738
Alignment:
| Q |
167 |
ttacctggattacaaaaccttctactgcttctcctttgtcaatggcagcagc---catctgaaagccgtagtttccgaaatccaagggatcagcttgaat |
263 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
25349480 |
ttacctggtttacaaaactttctaatgcttcaactttctcaatggcagcagctgccatctgaaagccgtagtttccaaaatccagtggatcagcttgaat |
25349579 |
T |
|
| Q |
264 |
gttgttgatcatactctgctggagtttctccaaccctattgatagtgcatcttcagcttgctgagatgataaacgcaggttgttaatgctagcaatttgt |
363 |
Q |
| |
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||||||||||||||||||||| ||||| || |||||| || ||| |||||||||||||| |||| |||||||| |||||||||| | || |||||||| |
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|
| T |
25349580 |
gttgttgatcatactctgctgtagtttttctaacccttctgttagagcatcttcagcttgaagagaggataaacgaaggttgttaacgttaacaatttgt |
25349679 |
T |
|
| Q |
364 |
tgatcattcaaattctcaagtttcggtaccacgatctgtaagcaaaagtcaagtggttt |
422 |
Q |
| |
|
|||||| | ||| || || |||||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
25349680 |
tgatcagttaaagcatcgagcttcggtacaacgatctgtaaggaaaagtcaagtagttt |
25349738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 167 - 369
Target Start/End: Original strand, 25347562 - 25347764
Alignment:
| Q |
167 |
ttacctggattacaaaaccttctactgcttctcctttgtcaatggcagcagccatctgaaagccgtagtttccgaaatccaagggatcagcttgaatgtt |
266 |
Q |
| |
|
|||||||||||| |||| | |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |
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|
| T |
25347562 |
ttacctggattataaaagatggtactgcttctactttgtccatggcagcagccatctgaaagccgtggtttccgaaatccatgggatcagcttgaatgct |
25347661 |
T |
|
| Q |
267 |
gttgatcatactctgctggagtttctccaaccctattgatagtgcatcttcagcttgctgagatgataaacgcaggttgttaatgctagcaatttgttga |
366 |
Q |
| |
|
| ||||||||||||||| || ||| || ||| || || ||| || |||||||||||| || ||||| || || ||||||||| | ||||||||||| |
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| T |
25347662 |
gctgatcatactctgcttgattttttctaacacttgtgttagagcctcttcagcttgcagaatggataagcggagattgttaatgtcaacaatttgttga |
25347761 |
T |
|
| Q |
367 |
tca |
369 |
Q |
| |
|
||| |
|
|
| T |
25347762 |
tca |
25347764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 773 - 981
Target Start/End: Original strand, 33171171 - 33171379
Alignment:
| Q |
773 |
tgtacatttagaatttgtgatggacgagatcctccgatccaaagaaaaaggcgttcgaccggtgatttccatacgccagagattaaatagaaaacatcag |
872 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| || ||||| || || || | || |||||| || || ||||||||||||| ||||| |
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|
| T |
33171171 |
tgtacatttagaagctgtgatggccgagatcctccgatccataggaaaagtcgctctacggatggtttccacacaccggagattaaatagaggggatcag |
33171270 |
T |
|
| Q |
873 |
cctttgcagcttcagctttcattctgaaaagatttgagtattggttcaagctactctcaacaagtagatgaagttgtatatcagatgaattagtttgcaa |
972 |
Q |
| |
|
|||||||||| || | ||||||||||||||||| ||||| || |||||| ||||| ||||| |||| | || || | || || | ||||||||| || |
|
|
| T |
33171271 |
cctttgcagcatccgttttcattctgaaaagatccgagtaatgattcaagacactctgaacaactagacggagctgcacttcggacgcattagtttgaaa |
33171370 |
T |
|
| Q |
973 |
tgcatttct |
981 |
Q |
| |
|
||||||||| |
|
|
| T |
33171371 |
tgcatttct |
33171379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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