View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4455-Insertion-3 (Length: 962)
Name: NF4455-Insertion-3
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-3 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] chr4 (8 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 318 - 962
Target Start/End: Original strand, 45135041 - 45135693
Alignment:
| Q |
318 |
aagcaaaagaagggatgcagagggatctcctgttgcggaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaagaccc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
45135041 |
aagcaaaagaagggatgcagagggatctcctgctgcagaaccctaattatatataataagaaagaagtacaaaaagtgaggggg-acaaaaccaaaaccc |
45135139 |
T |
|
| Q |
418 |
tcgggaaaattaataggtaacaggaaaaa-------------caaaaacaagagagaaaagacccgcaaaagagctagtgaggcgaacggctataggtac |
504 |
Q |
| |
|
||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
45135140 |
tcgagaaaattaataggtaacagaaaaaataaaaacccaaaacaaaaacaagagagaaaagacccgcaaaagagatagtgaggcgaacggctagaggtac |
45135239 |
T |
|
| Q |
505 |
ccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaatc |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45135240 |
ccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaatc |
45135339 |
T |
|
| Q |
605 |
aacagtttcannnnnnngacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcg |
704 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45135340 |
agtagtttcatttttttgacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcg |
45135439 |
T |
|
| Q |
705 |
tgaataacattgacactaaaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtcattcatagtatgatcat |
804 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45135440 |
tgaataacattggcactaaaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtcattcagagtatgatcat |
45135539 |
T |
|
| Q |
805 |
taccgtaatccatatcagtcaccgcatcacaccaagggccagtgatactcatatcagcaaaagaattgctctggttgattcccattatgaatctccacct |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
45135540 |
taccgtaatccatatcagtcaccgcatcacaccaagggccagtgataagcatatcagcaaaagaattgctct-gttgattcccattatgaatctcaacc- |
45135637 |
T |
|
| Q |
905 |
tgagctaaggtgtcttccactttgcaacagaaagagtttcaacagtagaagatgcctc |
962 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
45135638 |
tgagctaaggtgtcttccac-ttgc-acaggaagagtttcaatagtagaagatgcctc |
45135693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 28451362 - 28451527
Alignment:
| Q |
8 |
gagtataacaaagagaaggaattaaaacacgcatgttttccagttgcattggtaattggtaagtgaattgaagagtttatgtcaacaaagggtagtggac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28451362 |
gagtataacaaagagaaggaattaaaacacacatgtttttcgattgcattggtaattggtaagtgaattgaagagtttatgtcaacaaagggtagtggac |
28451461 |
T |
|
| Q |
108 |
cggtttggtagtggttactttataataagtgtggttcggttcggctcggtccggtttttaagttgt |
173 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
28451462 |
tggtctggtagtggttactttataataagtgcggttcggttcggctcggttcggtttttaagttgt |
28451527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 336 - 738
Target Start/End: Original strand, 37086863 - 37087279
Alignment:
| Q |
336 |
agagggatctcctgttgcggaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaagaccctcgggaaaattaatag-- |
433 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||| ||||||| | || |
|
|
| T |
37086863 |
agaggggtctcctgctgtagaaccctaatcatatataaaaagaaagaaatacaaaaagtgaggggggacaaaaccaaaactctcaagaaaattgaaagcg |
37086962 |
T |
|
| Q |
434 |
gtaacaggaaaa-----acaaa---------aacaagagagaaaagacccgcaaaagagctagtgaggcgaacggctataggtacccaccttgaaacctt |
519 |
Q |
| |
|
| || ||||||| ||||| || |||||| || |||||||| |||||||||| ||||||||||| || | || ||||||||||||| || |
|
|
| T |
37086963 |
gaaataggaaaagaaaaacaaagaggaaacaaaaaagagataagagacccgctaaagagctagcgaggcgaacgggtagaagtgcccaccttgaaacatt |
37087062 |
T |
|
| Q |
520 |
tgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaatcaacagtttcannnnn |
619 |
Q |
| |
|
|| | || ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | || ||||||| |||||| || |||| |
|
|
| T |
37087063 |
agctcgtgtcagactgctgcttcttgctcttcttctttcttgggaccactagttgaaatggttgtcttgtgtctcttgtgaaatcatcactttc--ttct |
37087160 |
T |
|
| Q |
620 |
nngacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgaca |
719 |
Q |
| |
|
|||| || |||||||| ||||| ||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||| ||||||||||| || |
|
|
| T |
37087161 |
ctgacctatattagcccaggaatcgctcaaaaaatctatagtttgttgggccacagaaggaataagtcctaaaacttgcatatcatgaataacatttgca |
37087260 |
T |
|
| Q |
720 |
ctaaaattagacaagttag |
738 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
37087261 |
ctaaaatttgacaagttag |
37087279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 622 - 743
Target Start/End: Complemental strand, 43197758 - 43197637
Alignment:
| Q |
622 |
gacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgacact |
721 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||| | ||||||| ||| || || |||||||||||||| || ||||||| ||| |||| |
|
|
| T |
43197758 |
gacccatgttagcccatgaatcactcagaaaatccatagtttgttaagccacagtaggaaccagccctaaaacttgcatgtcatgaataaaattttcact |
43197659 |
T |
|
| Q |
722 |
aaaattagacaagttagggtcg |
743 |
Q |
| |
|
||||| |||||||||| |||| |
|
|
| T |
43197658 |
aaaatgtgacaagttagagtcg |
43197637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 622 - 724
Target Start/End: Original strand, 34663258 - 34663360
Alignment:
| Q |
622 |
gacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgacact |
721 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||||||| |||| |||||||||| ||| || || ||||||||||||| || ||||||||||| |||| |
|
|
| T |
34663258 |
gacccatgttagcccaaaaatcgctcagaaaatccattttttgttgggccacagtaggaacaagctctaaaacttgcatttcatgaataacattttcact |
34663357 |
T |
|
| Q |
722 |
aaa |
724 |
Q |
| |
|
||| |
|
|
| T |
34663358 |
aaa |
34663360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 28431090 - 28431039
Alignment:
| Q |
318 |
aagcaaaagaagggatgcagagggatctcctgttgcggaaccctaatcatat |
369 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| |||||| || ||||| |
|
|
| T |
28431090 |
aagcaaaagatgggatgcagagggatctcctgctgcagaacccaaaacatat |
28431039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 318 - 962
Target Start/End: Original strand, 42205968 - 42206622
Alignment:
| Q |
318 |
aagcaaaagaagggatgcagagggatctcctgttgcggaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaagaccc |
417 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42205968 |
aagcaaaagaatggatgcatagggatctcctgccacagaatcctaatcatatataataagaaagaagtacaaaaagtgagtggggacaaaaccaagaccc |
42206067 |
T |
|
| Q |
418 |
tcgggaaaattaataggtaacaggaaaaacaaaaac-------------aagagagaaaagacccgcaaaagagctagtgaggcgaacggctat-aggta |
503 |
Q |
| |
|
|| ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42206068 |
tcaagaaaattaaaagctaacaggaaaaacaaaaacccaaaacaaaaacaagagagaaaagacccgcaaaagagctagtgaggcgaacggctaggaggta |
42206167 |
T |
|
| Q |
504 |
cccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaat |
603 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42206168 |
cccatcttgaaacctttgcatgctttggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaat |
42206267 |
T |
|
| Q |
604 |
caacagtttcannnnnnngacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatc |
703 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42206268 |
caacagtttcatttttctgacccatgttagcccaagaatcactcaaaaaatctatagtttgctgggccacagaagggacgagtcctaaaacttgcatatc |
42206367 |
T |
|
| Q |
704 |
gtgaataacattgacactaaaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtcattcatagtatgatca |
803 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
42206368 |
gtgagtaacattggcactaaaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcatgctcaaagtcattcagagtatgatca |
42206467 |
T |
|
| Q |
804 |
ttaccgtaatccatatcagtcaccgcatcacaccaagggccagtgatactcatatcagcaaaagaattgctctggttgattcccattatgaatctccacc |
903 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
42206468 |
ttaccgtaatccatatcagtcaccgcatcacaccaagggtcagtgatacgcatatcagcaaaagaattgctat-gttgattcccattatgaatctcaacc |
42206566 |
T |
|
| Q |
904 |
ttgagctaaggtgtcttccactttgcaacagaaagagtttcaacagtagaagatgcctc |
962 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
42206567 |
-tgagctaaggtgtcttccac-ttgc-acatgaagagtttcaacagtagaagatgcctc |
42206622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 318 - 610
Target Start/End: Original strand, 973368 - 973673
Alignment:
| Q |
318 |
aagcaaaagaagggatgcagagggatctcctgttgcggaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaagaccc |
417 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| | || |
|
|
| T |
973368 |
aagcaaaagaaaggatgcagatggatctcctgctgcagaaccctaatcatatatagtaagaaataagtacaaaaaatgaggggggacaaaaccaaaatcc |
973467 |
T |
|
| Q |
418 |
tcgggaaaattaataggtaacaggaaaaa-------------caaaaacaagagagaaaagacccgcaaaagagctagtgaggcgaacggctataggtac |
504 |
Q |
| |
|
|| ||||||||| || ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
973468 |
tcaagaaaattaaaagctaaaaggaaaaacaaaaacccaaaacaaaaacaagagagaaaagacccacaaaagagctagtgaggcgaacggctaaaggtac |
973567 |
T |
|
| Q |
505 |
ccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaatc |
604 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||| ||| |||| | |||||||||||||| |
|
|
| T |
973568 |
ccaccttaaaacctttgcatgcttcggaccgttacttcttgcttttcttctttgttgggaccacaagttaaaatagttagccaatgtctcttgctaaatc |
973667 |
T |
|
| Q |
605 |
aacagt |
610 |
Q |
| |
|
|||||| |
|
|
| T |
973668 |
aacagt |
973673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 622 - 756
Target Start/End: Complemental strand, 6827450 - 6827316
Alignment:
| Q |
622 |
gacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgacact |
721 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| |||||||||| ||| || ||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
6827450 |
gacccatgttagcccatgaatcgctcaaaaaatccatagtttgttgggccacagtaggaacaagtcctaaaacttgcatgtcatgaataacattttcact |
6827351 |
T |
|
| Q |
722 |
aaaattagacaagttagggtcggtcccaactatgg |
756 |
Q |
| |
|
||| || |||||||||| ||| ||| | ||||||| |
|
|
| T |
6827350 |
aaagtttgacaagttagagtctgtcgccactatgg |
6827316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 1397609 - 1397550
Alignment:
| Q |
342 |
atctcctgttgcggaaccctaatcatatataataagaaagaagtacaaaaagtgaggggg |
401 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1397609 |
atctcctgctgcagaaccctaatcatatataataagaaagaagtacaaaaggtgaggggg |
1397550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 687 - 742
Target Start/End: Complemental strand, 16420526 - 16420471
Alignment:
| Q |
687 |
cctaaaacttgcatatcgtgaataacattgacactaaaattagacaagttagggtc |
742 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
16420526 |
cctaaaacttgcatatcatgaataacatttgcattaaaatttgacaagttagggtc |
16420471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 30671129 - 30671076
Alignment:
| Q |
128 |
tataataagtgtggttcggttcggctcggtccggtttttaagttgtgaaccgaa |
181 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||||| | ||||||| |
|
|
| T |
30671129 |
tataataagtgtggttcggtttggttcggtccggttcttaagttataaaccgaa |
30671076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 318 - 962
Target Start/End: Original strand, 6779533 - 6780188
Alignment:
| Q |
318 |
aagcaaaagaagggatgcagagggatctcctgttgcggaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaagaccc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6779533 |
aagcaaaagaagggatgcagagggatctcctgctgtagaaccctaatcatatataatatgaaagaagtacaaaaagtgaggggggacaaaaccaaaaccc |
6779632 |
T |
|
| Q |
418 |
tcgggaaaattaataggtaacaggaaaaacaaaaac-------------aagagagaaaagacccgcaaaagagctagtgaggcgaacggctataggtac |
504 |
Q |
| |
|
|| ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6779633 |
tcaagaaaattaaaagctaacaggaaaaacaaaaacccaaaacaaaaacaagagagaaaagacccgcaaaagagctagtgaggcgaacggctagaggtac |
6779732 |
T |
|
| Q |
505 |
ccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaatc |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6779733 |
ccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccattatctcttgctaaatc |
6779832 |
T |
|
| Q |
605 |
aacagtttcannnnnnngacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcg |
704 |
Q |
| |
|
| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6779833 |
attagtttcattttttttacccatgttagtccaagaatcactcaaaaaatctatagtttgctgggccacaaaagggacgagtcctaaaacttgcatatcg |
6779932 |
T |
|
| Q |
705 |
tgaataacattgacactaaaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtcattcatagtatgatcat |
804 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6779933 |
tgaataacattggcactaaaattaaacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtcattcagagtatgatcat |
6780032 |
T |
|
| Q |
805 |
taccgtaatccatatcagtcaccgcatcacaccaagggccagtgatactcatatcagcaaaagaattgctctggttgattcccattatgaatctccacct |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || || |
|
|
| T |
6780033 |
taccgtaatccatatcagtcaccgcatcacactaagggctagtgatacacatatcagcaaaagaattgctct-gttgattcccattatgaatct-catct |
6780130 |
T |
|
| Q |
905 |
--tgagctaaggtgtcttccactttgcaacagaaagagtttcaacagtagaagatgcctc |
962 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
6780131 |
aaaaagctaaggtgtcttccac-ttgc-acaggaagagtttcaatagtagaagatgcctc |
6780188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 322 - 877
Target Start/End: Original strand, 54035541 - 54036108
Alignment:
| Q |
322 |
aaaagaagggatgcagagggatctcctgttgcggaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaagaccctcgg |
421 |
Q |
| |
|
|||||||||| ||||||||| |||| || ||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| | |||| |
|
|
| T |
54035541 |
aaaagaaggggtgcagaggggtctcttgctgcagaaccctaatcatatataaaaagaaagaagtacaaagagtgacgggggacaaaaccaaaatcctcaa |
54035640 |
T |
|
| Q |
422 |
gaaaattaatag--gtaacaggaaaaacaaaaac----------aagagagaaaagacccgcaaaagagctagtgaggcgaacggctataggtacccacc |
509 |
Q |
| |
|
||| ||||| || | ||| ||||||| |||||| |||||| || |||||||| ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
54035641 |
gaagattaaaagcagaaaccggaaaaaaaaaaacccaaaaaaacaagagaaaagagacccgctaaagagctagtgaggcgaacggctagaagtacccacc |
54035740 |
T |
|
| Q |
510 |
ttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaatcaacag |
609 |
Q |
| |
|
|| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
54035741 |
ttaaaacctttgctcgcttcagactgttgcttcttgcttttcttctttcttgggaccacaagttgaaaaggttggcatgtgtctcttgctaaatcaacaa |
54035840 |
T |
|
| Q |
610 |
tttcannnnnnngacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaat |
709 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||| ||||||| | ||||||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
54035841 |
tttcttctttctgacctatgttagcccaagaatcactcaaaaaatccgtagtttgttaagccacagaaggaacaagtcccaaaacttgcatatcatgaat |
54035940 |
T |
|
| Q |
710 |
aacattgacactaaaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtcattcatagtatgatcattaccg |
809 |
Q |
| |
|
|||||| ||||||| || ||||||||| |||| |||||||||| |||| ||| |||| ||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
54035941 |
aacattagcactaaagtttgacaagttaaggtctgtcccaactacagaattatttgttcccaattcctgctcaaagccatcgagagtatgatcattacca |
54036040 |
T |
|
| Q |
810 |
taatccatatcagtcaccgcatcacaccaagggccagtgatactcatatcagcaaaagaattgctctg |
877 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
54036041 |
taatccatatcagtcagtgcatcacatcaagggccagtgatacgcatatcaacaaaagaattgctctg |
54036108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 318 - 600
Target Start/End: Original strand, 29599252 - 29599534
Alignment:
| Q |
318 |
aagcaaaagaagggatgcagagggatctcctgttgcggaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaagaccc |
417 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29599252 |
aagcaaaagaagggatgcagagcgatctcctgctgcagaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaaaaccc |
29599351 |
T |
|
| Q |
418 |
tcgggaaaattaataggtaacaggaaaaacaaaaacaagagagaaaagacccgcaaaagagctagtgaggcgaacggctataggtacccaccttgaaacc |
517 |
Q |
| |
|
|| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29599352 |
tcaagaaaattaaaagctaacaggaaaaacaaaaacaagagataaaagacccgcaaaagagctagtgaggcgaacggctagaggtacccaccttgaaacc |
29599451 |
T |
|
| Q |
518 |
tttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgcta |
600 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
29599452 |
tttgcatgcttcagactgttgcttcttgcttttcttatttcttggaaccacaagttgaaatgattggccagtgtctcttgcta |
29599534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 44722455 - 44722689
Alignment:
| Q |
8 |
gagtataacaaagagaaggaattaaaacacgcatgttttccagttgcattggtaattggtaagtgaattgaagagtttatgtcaacaaagggtagtggac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44722455 |
gagtataacaaagagaaggaattaaaacacgcatgttttccggttgcattggtaattggtaagtgaattgaagagtttatgtcaacaaagggtagtggac |
44722554 |
T |
|
| Q |
108 |
cggtttggtagtggttactttataataagtgtggttcggttcggctcggtccggtttttaagttgtg-------aaccgaaccgaaccggtcggttctta |
200 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
44722555 |
cggtctggtagtggttactttaaaataagtgcggttcggttcggctcggtccggtttttaagttgtgaaccgaaaaccgaaccgaactggtcggttctta |
44722654 |
T |
|
| Q |
201 |
cttcagatggtccaaacacatccaaaatatatcgg |
235 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| |
|
|
| T |
44722655 |
cttcagatggcccaaacacatccaaaaaatatcgg |
44722689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 626 - 738
Target Start/End: Original strand, 19599101 - 19599213
Alignment:
| Q |
626 |
catgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgacactaaaa |
725 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| || ||||||| ||| || || |||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
19599101 |
catgttagcccatgaatcactcagaaaatccatagtttgttgagccacagtaggaaccagccctaaaacttgcatgttatgaataacattttcactaaag |
19599200 |
T |
|
| Q |
726 |
ttagacaagttag |
738 |
Q |
| |
|
| |||||||||| |
|
|
| T |
19599201 |
tgtgacaagttag |
19599213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 634 - 738
Target Start/End: Original strand, 55104037 - 55104141
Alignment:
| Q |
634 |
cccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgacactaaaattagacaa |
733 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| || ||||||| ||| || || |||||||||||||| || ||||||||||| ||||||| | ||||| |
|
|
| T |
55104037 |
cccatgaatcactcagaaaatccatagtttgttgagccacagtaggaaccagccctaaaacttgcatgtcatgaataacattttcactaaagtgtgacaa |
55104136 |
T |
|
| Q |
734 |
gttag |
738 |
Q |
| |
|
||||| |
|
|
| T |
55104137 |
gttag |
55104141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 689 - 852
Target Start/End: Complemental strand, 38251977 - 38251814
Alignment:
| Q |
689 |
taaaacttgcatatcgtgaataacattgacactaaaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtca |
788 |
Q |
| |
|
|||||||||||| || ||||| ||||| ||||||| || |||||||||| ||| ||| ||||||||||| || |||| |||||||||||||| ||| |
|
|
| T |
38251977 |
taaaacttgcatttcatgaattacattagcactaaagtttgacaagttagagtctgtcacaactatggaactatcagttcccaattcctgctcaaattca |
38251878 |
T |
|
| Q |
789 |
-ttcatagtatgatcattaccgtaatccatatcagtcaccgcatcacaccaagggccagtgatac |
852 |
Q |
| |
|
||| | || ||||| | || ||| ||||||| ||| ||||||||||||||||| || |||||| |
|
|
| T |
38251877 |
cttcgt-gtgtgatcctgactgtagtccatattggtcgccgcatcacaccaagggacattgatac |
38251814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 700
Target Start/End: Complemental strand, 27139449 - 27139388
Alignment:
| Q |
639 |
gaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcat |
700 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| || | | || ||||||||||||||||| |
|
|
| T |
27139449 |
gaatcactcaaaaaatccatagtttgttaggcctcaatatgaacaagtcctaaaacttgcat |
27139388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-102; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 43304532 - 43304304
Alignment:
| Q |
8 |
gagtataacaaagagaaggaattaaaacacgcatgttttccagttgcattggtaattggtaagtgaattgaagagtttatgtcaacaaagggtagtggac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43304532 |
gagtataacaaagagaaggaattaaaacacgcatgttttcctgttgcattggtaattggtaagtgaattgaagagtttatgtcaacaaagggtagtggac |
43304433 |
T |
|
| Q |
108 |
cggtttggtagtggttactttataataagtgtggttcggttcggctcggtccggtttttaagttgtgaaccg--aaccgaaccggtcggttcttacttca |
205 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43304432 |
cggtctggtagtggttactttaaaataagtgcggctcggttcggctcggtccggtttttaagttgtgaaccgaaaaccgaaccggtcggttcttacttca |
43304333 |
T |
|
| Q |
206 |
gatggtccaaacacatccaaaatatatcg |
234 |
Q |
| |
|
||||| |||||||||||||||| |||||| |
|
|
| T |
43304332 |
gatggcccaaacacatccaaaaaatatcg |
43304304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 451 - 853
Target Start/End: Original strand, 34711631 - 34712030
Alignment:
| Q |
451 |
aacaagagagaaaagacccgcaaaagagctagtgaggcgaacggctataggtacccaccttgaaacctttgcatgcttcggactgttgcttcttgctttt |
550 |
Q |
| |
|
||||||||| || | |||||| |||||||||| || ||||| ||||| | |||||||||||||||||||| || | |||| ||||||||||| || |
|
|
| T |
34711631 |
aacaagagataagaaacccgctaaagagctagcgaagcgaatggctagaaacacccaccttgaaacctttgctcgcgcccaactgctgcttcttgctctt |
34711730 |
T |
|
| Q |
551 |
cttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaatcaacagtttcannnnnnngacccatgttagcccaagaatcactcaaa |
650 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||| ||| ||||||||| |||||| ||||| ||||| |
|
|
| T |
34711731 |
cttctttcttgggaccaccagttgaaatggttggccggtgtctcttgaaaaatcaacatcttc---tttctgacccatgtcagcccatgaatcgttcaaa |
34711827 |
T |
|
| Q |
651 |
aaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgacactaaaattagacaagttagggtcggtcccaa |
750 |
Q |
| |
|
|||| ||||||||| | |||| ||| ||| || |||| ||||| ||||||||| |||||||| || ||||||| || |||| ||||| || ||| ||| |
|
|
| T |
34711828 |
aaattcatagtttgttaggcctcaggaggaacaagtcataaaatttgcatatcatgaataacttttgcactaaagtttgacacgttagagtatgtcacaa |
34711927 |
T |
|
| Q |
751 |
ctatggaatcattcattcctaattcctgctcaaagtcattcatagtatgatcattaccgtaatccatatcagtcaccgcatcacaccaagggccagtgat |
850 |
Q |
| |
|
||| |||| ||| |||| ||||| ||||||||||||| | ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| | |
|
|
| T |
34711928 |
ctacagaattatttgttcccaattcatgctcaaagtcatcgagtgtatgatcattactgtaatccatatcggtcactgcatcacaccaagggccagtgct |
34712027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 623 - 926
Target Start/End: Original strand, 1620886 - 1621186
Alignment:
| Q |
623 |
acccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgacacta |
722 |
Q |
| |
|
||||||||||||| | |||| ||| ||||||| ||||||||| |||||||| ||||| || |||| |||||||| |||| | ||||||||| ||||| |
|
|
| T |
1620886 |
acccatgttagcctaggaattactaaaaaaatacatagtttgttgggccacggaaggaacaagtcataaaacttccata-catgaataacacgtgcacta |
1620984 |
T |
|
| Q |
723 |
aaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtcattcatagtatgatcattaccgtaatccatatcag |
822 |
Q |
| |
|
|| || ||||||||| || |||||| ||| ||| || | |||| ||||| ||||||||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
1620985 |
aagtttaacaagttagagtttgtcccagctacataattatccgttcccaattcttgctcaaagtcatcgagtgtatgatcattatcgtaatccatatcag |
1621084 |
T |
|
| Q |
823 |
tcaccgcatcacaccaagggccagtgatactcatatcagcaaaagaattgctctggttgattcccattatgaatctccaccttgagctaaggtgtcttcc |
922 |
Q |
| |
|
|| || ||||||||||||||| |||||||| |||| || || |||||||||||| ||| | ||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
1621085 |
tcgcctcatcacaccaagggctagtgatacacataccaacataagaattgctct-attggtccccattatgtatctcaacc-agagctaaggtgtcttcc |
1621182 |
T |
|
| Q |
923 |
actt |
926 |
Q |
| |
|
|||| |
|
|
| T |
1621183 |
actt |
1621186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 623 - 926
Target Start/End: Complemental strand, 1625574 - 1625274
Alignment:
| Q |
623 |
acccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgacacta |
722 |
Q |
| |
|
||||||||||||| | |||| ||| ||||||| ||||||||| |||||||| ||||| || |||| |||||||| |||| | ||||||||| ||||| |
|
|
| T |
1625574 |
acccatgttagcctaggaattactaaaaaaatacatagtttgttgggccacggaaggaacaagtcataaaactttcata-catgaataacacgtgcacta |
1625476 |
T |
|
| Q |
723 |
aaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtcattcatagtatgatcattaccgtaatccatatcag |
822 |
Q |
| |
|
|| || ||||||||| || |||||| ||| ||| || | |||| ||||| ||||||||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
1625475 |
aagtttaacaagttagagtttgtcccagctacataattatccgttcccaattcttgctcaaagtcatcgagtgtatgatcattatcgtaatccatatcag |
1625376 |
T |
|
| Q |
823 |
tcaccgcatcacaccaagggccagtgatactcatatcagcaaaagaattgctctggttgattcccattatgaatctccaccttgagctaaggtgtcttcc |
922 |
Q |
| |
|
|| || ||||||||||||||| |||||||| |||| || || |||||||||||| ||| | ||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
1625375 |
tcgcctcatcacaccaagggctagtgatacacataccaacataagaattgctct-attggtccccattatgtatctcaacc-agagctaaggtgtcttcc |
1625278 |
T |
|
| Q |
923 |
actt |
926 |
Q |
| |
|
|||| |
|
|
| T |
1625277 |
actt |
1625274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 622 - 756
Target Start/End: Original strand, 19566062 - 19566196
Alignment:
| Q |
622 |
gacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgacact |
721 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||| || ||||||| ||| || || |||||||||||||| || ||||||||||| |||| |
|
|
| T |
19566062 |
gacccatgttagcccatgaatcactcagaaaatccatagtttgttgagccacagtaggaaccagccctaaaacttgcatgtcatgaataacattttcact |
19566161 |
T |
|
| Q |
722 |
aaaattagacaagttagggtcggtcccaactatgg |
756 |
Q |
| |
|
||| | |||||||||| ||| ||| | ||||||| |
|
|
| T |
19566162 |
aaagtgtgacaagttagagtctgtcgccactatgg |
19566196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 318 - 428
Target Start/End: Original strand, 34711477 - 34711587
Alignment:
| Q |
318 |
aagcaaaagaagggatgcagagggatctcctgttgcggaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaagaccc |
417 |
Q |
| |
|
|||||||||||||| | || ||||||||| | ||| |||| |||||||||||| | ||||||||| ||||| |||||||||||| ||||||| |||| |
|
|
| T |
34711477 |
aagcaaaagaaggggtacaaagggatctcatactgcagaactctaatcatatattaaaagaaagaaaaacaaagagtgaggggggatgaaaccaaaaccc |
34711576 |
T |
|
| Q |
418 |
tcgggaaaatt |
428 |
Q |
| |
|
|| ||||||| |
|
|
| T |
34711577 |
tcaagaaaatt |
34711587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 1625855 - 1625791
Alignment:
| Q |
355 |
gaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaagaccctc |
419 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||| ||||||||| || |||||||| |||||| |
|
|
| T |
1625855 |
gaaccctaatcatatattaaaagaaagaaatacaaagagtgaggggagaaaaaaccaaaaccctc |
1625791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 448 - 522
Target Start/End: Complemental strand, 1625731 - 1625657
Alignment:
| Q |
448 |
aaaaacaagagagaaaagacccgcaaaagagctagtgaggcgaacggctataggtacccaccttgaaacctttgc |
522 |
Q |
| |
|
|||||||||||| || ||||| || ||||||||||||| |||||| |||| | | ||||||||| |||||||||| |
|
|
| T |
1625731 |
aaaaacaagagaaaagagaccagctaaagagctagtgaagcgaacagctagaagcacccaccttaaaacctttgc |
1625657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 289
Target Start/End: Complemental strand, 43304252 - 43304223
Alignment:
| Q |
260 |
ggatcggttcggttctgaacacccctagtt |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
43304252 |
ggatcggttcggttctgaacacccctagtt |
43304223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 2e-64; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 503 - 877
Target Start/End: Complemental strand, 28635894 - 28635520
Alignment:
| Q |
503 |
acccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaa |
602 |
Q |
| |
|
|||||||||||||| ||||| || || || || ||||||||||| ||||||||||||| || ||| ||||||||||||||||| || | ||||| ||| |
|
|
| T |
28635894 |
acccaccttgaaacatttgctcgcgtctgattgctgcttcttgctcttcttctttcttgagagcaccagttgaaatggttggcctgtgtttcttgtcaaa |
28635795 |
T |
|
| Q |
603 |
tcaacagtttcannnnnnngacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatat |
702 |
Q |
| |
|
||| || |||| |||| ||||||| |||||| ||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
28635794 |
tcagcaatttcttctttttgacctatgttagtccaagagtcactcaaaaaatccatagtttgttgggccacataaggaacaagtcctaaaacttgcatat |
28635695 |
T |
|
| Q |
703 |
cgtgaataacattgacactaaaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtcattcatagtatgatc |
802 |
Q |
| |
|
| ||||||||||| ||||||| || ||||| |||| ||| | | | |||| || ||| |||| || | ||||||||||| || | |||||||| |
|
|
| T |
28635694 |
catgaataacatttgcactaaagtttgacaaattagagtctgccaccactacatgattatttgttcccaacttctgctcaaagttatcgagtgtatgatc |
28635595 |
T |
|
| Q |
803 |
attaccgtaatccatatcagtcaccgcatcacaccaagggccagtgatactcatatcagcaaaagaattgctctg |
877 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
28635594 |
attaccgtaatccatatcggtcaccgcatcacaccaaggaccagtgatacgcatatcagaaaaggaattgctctg |
28635520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 625 - 738
Target Start/End: Original strand, 13263690 - 13263803
Alignment:
| Q |
625 |
ccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataac-attgacactaa |
723 |
Q |
| |
|
||||||||| ||| || |||||||| || ||||||||||| |||||| ||| ||| | || ||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
13263690 |
ccatgttagaccaggattcactcaataattccatagtttgttgggcctcagtaggaattagccctaaaacttgcatatcgtgaattacaattga-actaa |
13263788 |
T |
|
| Q |
724 |
aattagacaagttag |
738 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
13263789 |
agttcgacaagttag |
13263803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 584
Target Start/End: Complemental strand, 35211326 - 35211206
Alignment:
| Q |
464 |
agacccgcaaaagagctagtgaggcgaacggctataggtacccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttggg |
563 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||| | | | ||||||| ||| |||||| ||| || || || || |||||||| ||||||||||| ||| |
|
|
| T |
35211326 |
agacccgctaaagagctagcgagacgaacggctagaagcatccaccttaaaatctttgcttgcgtcagattgatgtttcttgctcttcttctttctaggg |
35211227 |
T |
|
| Q |
564 |
accacaagttgaaatggttgg |
584 |
Q |
| |
|
| ||| | || |||||||||| |
|
|
| T |
35211226 |
aacactaattaaaatggttgg |
35211206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 687 - 742
Target Start/End: Original strand, 4777330 - 4777385
Alignment:
| Q |
687 |
cctaaaacttgcatatcgtgaataacattgacactaaaattagacaagttagggtc |
742 |
Q |
| |
|
|||||||||||||||||||||||| |||| || ||||||| |||||||||||||| |
|
|
| T |
4777330 |
cctaaaacttgcatatcgtgaataccatttgcattaaaatttgacaagttagggtc |
4777385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 687 - 757
Target Start/End: Complemental strand, 16060274 - 16060204
Alignment:
| Q |
687 |
cctaaaacttgcatatcgtgaataacattgacactaaaattagacaagttagggtcggtcccaactatgga |
757 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||| || ||||||||||| ||| | |||||||| |
|
|
| T |
16060274 |
cctaaaacttgcatttcgtgaataacatttgcaataaaatttgataagttagggtccgtcaccactatgga |
16060204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 845
Target Start/End: Complemental strand, 35210765 - 35210692
Alignment:
| Q |
772 |
attcctgctcaaagtcattcatagtatgatcattaccgtaatccatatcagtcaccgcatcacaccaagggcca |
845 |
Q |
| |
|
|||||||||||||||||| | | |||||||||||||||||| ||| ||| ||||||||||| ||||||||| |
|
|
| T |
35210765 |
attcctgctcaaagtcatcgagtgcatgatcattaccgtaatctataggagtgaccgcatcacaacaagggcca |
35210692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 7517563 - 7517608
Alignment:
| Q |
323 |
aaagaagggatgcagagggatctcctgttgcggaaccctaatcata |
368 |
Q |
| |
|
||||| |||||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
7517563 |
aaagatgggatgcagagggatctcttgttgcagtaccctaatcata |
7517608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 430
Target Start/End: Complemental strand, 28636083 - 28635987
Alignment:
| Q |
333 |
tgcagagggatctcctgttgcggaaccctaatcatatataataagaaagaagtacaaaaagtgaggggggacaaaaccaagaccctcgggaaaattaa |
430 |
Q |
| |
|
||||||||| |||||| ||| |||||| ||||||||| | |||||||| ||||| ||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
28636083 |
tgcagaggggtctcctaatgcagaacccagatcatatattaatagaaagaaaaacaaagagtgaggggggac-aaaccaaaaccctcaagaaaattaa |
28635987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 718 - 874
Target Start/End: Original strand, 26159557 - 26159716
Alignment:
| Q |
718 |
cactaaaattagacaagttagggtcggtcccaactatggaatcattcattcctaattcctgctcaaagtcattca---tagtatgatcattaccgtaatc |
814 |
Q |
| |
|
||||||| || |||||||||| ||| | | |||||| ||||| |||||||| ||||| ||||||||| ||| | || ||||||||||| |||||| |
|
|
| T |
26159557 |
cactaaagtttgacaagttagagtctgccacaactacggaattgttcattcccaattcatgctcaaagacatcgagtatatgatgatcattactgtaatc |
26159656 |
T |
|
| Q |
815 |
catatcagtcaccgcatcacaccaagggccagtgatactcatatcagcaaaagaattgct |
874 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| ||||||| |||| |||||||| |
|
|
| T |
26159657 |
catatcggtcaccgcatcacaccaagggccaatgatacacatatcaacaaacgaattgct |
26159716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 622 - 715
Target Start/End: Complemental strand, 11268625 - 11268532
Alignment:
| Q |
622 |
gacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacatt |
715 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||||| || ||||||| ||| || || |||||||||||||| || ||||||||||| |
|
|
| T |
11268625 |
gacccatgttagcccatgagtcactcagaaaatccatagtttgttgagccacagtaggaactagccctaaaacttgcatgtcatgaataacatt |
11268532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 738
Target Start/End: Complemental strand, 39358640 - 39358589
Alignment:
| Q |
687 |
cctaaaacttgcatatcgtgaataacattgacactaaaattagacaagttag |
738 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||| |||||||||| |
|
|
| T |
39358640 |
cctaaaacttgcatatcgtgaataacatttgcattgaaatttgacaagttag |
39358589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 473 - 583
Target Start/End: Complemental strand, 8005171 - 8005061
Alignment:
| Q |
473 |
aaagagctagtgaggcgaacggctataggtacccaccttgaaacctttgcatgcttcggactgttgcttcttgcttttcttctttcttgggaccacaagt |
572 |
Q |
| |
|
|||||||||| |||||||||||| | || |||||||||||| ||||||| || |||| | | ||||||||| | || |||||||||||||||| | | |
|
|
| T |
8005171 |
aaagagctagcgaggcgaacggccaaagacacccaccttgaaccctttgctcgcctcgggccgctgcttcttgttctttctctttcttgggaccaccaat |
8005072 |
T |
|
| Q |
573 |
tgaaatggttg |
583 |
Q |
| |
|
|||||| |||| |
|
|
| T |
8005071 |
tgaaatagttg |
8005061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 700
Target Start/End: Original strand, 2506178 - 2506239
Alignment:
| Q |
639 |
gaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcat |
700 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| || | | || ||||||||||||||||| |
|
|
| T |
2506178 |
gaatcactcaaaaaatccatagtttgttaggcctcaatatgaacaagtcctaaaacttgcat |
2506239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 613
Target Start/End: Original strand, 1912390 - 1912465
Alignment:
| Q |
538 |
gcttcttgcttttcttctttcttgggaccacaagttgaaatggttggccagtatctcttgctaaatcaacagtttc |
613 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||||||||||||||| || ||||||| ||||||||| |||| |
|
|
| T |
1912390 |
gcttcttgctcttcttcttttttgggaccatcggttgaaatggttggcatgtgtctcttgtcaaatcaacaatttc |
1912465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 757
Target Start/End: Original strand, 8121153 - 8121288
Alignment:
| Q |
622 |
gacccatgttagcccaagaatcactcaaaaaatccatagtttgctgggccacagaagggacgagtcctaaaacttgcatatcgtgaataacattgacact |
721 |
Q |
| |
|
|||||||||||| ||| ||||| |||| ||||||||| ||||| | |||||||| ||| | || |||||||||| || || ||||||||||| |||| |
|
|
| T |
8121153 |
gacccatgttagtccatgaatcgctcagaaaatccatggtttgtttggccacagtaggagcaagccctaaaacttttatgtcatgaataacattttcact |
8121252 |
T |
|
| Q |
722 |
aaaattagacaagttagggtcggtcccaactatgga |
757 |
Q |
| |
|
||| || |||| |||| ||| ||| | |||||||| |
|
|
| T |
8121253 |
aaagtttgacatattagagtctgtcaccactatgga |
8121288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 687 - 757
Target Start/End: Original strand, 9744432 - 9744502
Alignment:
| Q |
687 |
cctaaaacttgcatatcgtgaataacattgacactaaaattagacaagttagggtcggtcccaactatgga |
757 |
Q |
| |
|
|||||| |||||||||| ||||||||||| || ||||||| || ||||||||||| ||| | |||||||| |
|
|
| T |
9744432 |
cctaaatcttgcatatcatgaataacatttgcattaaaatttgataagttagggtccgtcaccactatgga |
9744502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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