View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455-Insertion-4 (Length: 681)
Name: NF4455-Insertion-4
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 8 - 681
Target Start/End: Original strand, 16942731 - 16943406
Alignment:
| Q |
8 |
aaaacagattggaccaatgctccattcattgcctcatatagaaacttcaatgcaaaagcttgtatttggacttcttcaggttcttcttgttcttccaaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16942731 |
aaaacagattggaccaatgctccattcattgcctcatatagaaacttcaatgcaaaagcttgtatttggacttcttcaggttcttcttgttcttccaaca |
16942830 |
T |
|
| Q |
108 |
aatctccattatcatcattcacatcccgatcatggttaagagaatcacttgattcaaaagggatacgtaaaattcgttgggtgcaaaagaattacatgat |
207 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16942831 |
aatctccattatcatcatccacatcccaatcatggttaagagaatcacttgactcaaaagggatacgtaaaattcgttgggtgcaaaagaattacatgat |
16942930 |
T |
|
| Q |
208 |
atataattactgcactgattataaacggttcccacaaggcttcccagctgaatgtattaccagtaaaccacacaaattgtaatataaaagtgtaaaagct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16942931 |
atataattactgcactgattataaacggttcccacaaggcttcccagctgaatgtattaccagtaaaccacacaaattgtaatataaaagtgtaaaagct |
16943030 |
T |
|
| Q |
308 |
cggatttatatcctctatggcggttgcacaatgcaacggcctttggaatcgttagatctcgagagtgaaactttttctcattagatctaatggttttaga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16943031 |
cggatttatatcctctatggcggttgcacaatgcaatggcctttagaatcgttagatctcgagagtgaaactttttctcattagatttaatggttttaga |
16943130 |
T |
|
| Q |
408 |
ggccgcatcatgcagtggtcatagaggactcct--acataaaagccctatattggacgcgtgaaatataagtgannnnnnncttaagtaaatttatattg |
505 |
Q |
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|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
16943131 |
ggccgcatcatgcagtggccatagaggactcctacacaaaaaagccctatattggacgcgtgaaatataagtgatttttttctttagtaaatttatattg |
16943230 |
T |
|
| Q |
506 |
aaactataggattgatcgtttatgtgttgtgcattattacattgtatgtgtataggaaggnnnnnnncaaggcatgtatgataatgatagcaataagtgg |
605 |
Q |
| |
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| T |
16943231 |
aaactataggattgatcgtttatgtcttgtgcattattacattgtaggtgtataagaaggaaaaaaacaaggcatgtatgataatgatagcaataagtgg |
16943330 |
T |
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| Q |
606 |
tgaaattgtatattatttcgttcgtatataaatttgtttgagattaaaatgcttctgtacgcatttgacttctttg |
681 |
Q |
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| T |
16943331 |
tgaaattgtatattatttcgttcctatataaatttgtttgagattaaaatgcttttgtacgcatttgacttctttg |
16943406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 8 - 681
Target Start/End: Original strand, 17013396 - 17014071
Alignment:
| Q |
8 |
aaaacagattggaccaatgctccattcattgcctcatatagaaacttcaatgcaaaagcttgtatttggacttcttcaggttcttcttgttcttccaaca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17013396 |
aaaacagattggaccaatgctccattcattgcctcatatagaaacttcaatgcaaaagcttgtatttggacttcttcaggttcttcttgttcttccaaca |
17013495 |
T |
|
| Q |
108 |
aatctccattatcatcattcacatcccgatcatggttaagagaatcacttgattcaaaagggatacgtaaaattcgttgggtgcaaaagaattacatgat |
207 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17013496 |
aatctccattatcatcatccacatcccaatcatggttaagagaatcacttgactcaaaagggatacgtaaaattcgttgggtgcaaaagaattacatgat |
17013595 |
T |
|
| Q |
208 |
atataattactgcactgattataaacggttcccacaaggcttcccagctgaatgtattaccagtaaaccacacaaattgtaatataaaagtgtaaaagct |
307 |
Q |
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| T |
17013596 |
atataattactgcactgattataaacggttcccacaaggcttcccagctgaatgtattaccagtaaaccacacaaattgtaatataaaagtgtaaaagct |
17013695 |
T |
|
| Q |
308 |
cggatttatatcctctatggcggttgcacaatgcaacggcctttggaatcgttagatctcgagagtgaaactttttctcattagatctaatggttttaga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17013696 |
cggatttatatcctctatggcggttgcacaatgcaatggcctttagaatcgttagatctcgagagtgaaactttttctcattagatttaatggttttaga |
17013795 |
T |
|
| Q |
408 |
ggccgcatcatgcagtggtcatagaggactcct--acataaaagccctatattggacgcgtgaaatataagtgannnnnnncttaagtaaatttatattg |
505 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
17013796 |
ggccgcatcatgcagtggccatagaggactcctacacaaaaaagccctatattggacgcgtgaaatataagtgatttttttctttagtaaatttatattg |
17013895 |
T |
|
| Q |
506 |
aaactataggattgatcgtttatgtgttgtgcattattacattgtatgtgtataggaaggnnnnnnncaaggcatgtatgataatgatagcaataagtgg |
605 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
17013896 |
aaactataggattgatcgtttatgtcttgtgcattattacattgtaggtgtataagaaggaaaaaaacaaggcatgtatgataatgatagcaataagtgg |
17013995 |
T |
|
| Q |
606 |
tgaaattgtatattatttcgttcgtatataaatttgtttgagattaaaatgcttctgtacgcatttgacttctttg |
681 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17013996 |
tgaaattgtatattatttcgttcctatataaatttgtttgagattaaaatgcttttgtacgcatttgacttctttg |
17014071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 52591109 - 52591206
Alignment:
| Q |
8 |
aaaacagattggaccaatgctccattcattgcctcatatagaaacttcaatgcaaaagcttgtatttggacttcttcaggttcttcttgttcttccaa |
105 |
Q |
| |
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||||| |||||| || | || ||||||| ||| |||||| |||||||||| |||||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
52591109 |
aaaactgattggtcccaagccccattcactgcttcatatggaaacttcaacattcaagcttgtgtttggacttcttcaggttcctcttgctcttccaa |
52591206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 53495461 - 53495511
Alignment:
| Q |
11 |
acagattggaccaatgctccattcattgcctcatatagaaacttcaatgca |
61 |
Q |
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| T |
53495461 |
acagattggacaaatgctccattcactgcatcatataggaatttcaatgca |
53495511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 52591274 - 52591315
Alignment:
| Q |
185 |
tgggtgcaaaagaattacatgatatataattactgcactgat |
226 |
Q |
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| T |
52591274 |
tgggtgcaaaagaattacatgatttacaattattgcactgat |
52591315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 53502663 - 53502699
Alignment:
| Q |
185 |
tgggtgcaaaagaattacatgatatataattactgca |
221 |
Q |
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|||||||| ||||||||||||||||| |||||||||| |
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| T |
53502663 |
tgggtgcagaagaattacatgatatacaattactgca |
53502699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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