View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4455-Insertion-5 (Length: 675)
Name: NF4455-Insertion-5
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 343 - 648
Target Start/End: Original strand, 34900310 - 34900615
Alignment:
| Q |
343 |
acatttaaccctcttatttagtaggtgaactccgaattcaatacgaaaaactggttgaaggaattaggatggctaaacacatcacttagacaatcattat |
442 |
Q |
| |
|
|||||||| |||||||||| || |||||||| || ||||||| |||||||| ||| ||||||||||| ||||||||||||||||| ||||||||| ||| |
|
|
| T |
34900310 |
acatttaagtctcttatttattaagtgaactcggatttcaatatgaaaaactagtttaaggaattagggtggctaaacacatcactcagacaatcactat |
34900409 |
T |
|
| Q |
443 |
tataagcaaaattcattgaataattgatttatggtataagagtagtccatatacattaatattcttaacatgataaatgagtgtatctcacctaaaaaac |
542 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
34900410 |
tataaacaaaattcattgaataattgatttacggtataagagtagtccatatacattaatattcttaacattataaatgaatgtatctcacctaaaaaac |
34900509 |
T |
|
| Q |
543 |
ctaattcaaagaacgagggtgttcggacattgtacaacaaacaattcaaaatatgagggtgttacatcgtacaacaatgaacaaacaattcaaaatctga |
642 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34900510 |
ctaattcaaagaacgagggtgttctgacattgtacaacaaacaattcaaaatatgagggtgttacatcgtacaacaatgaacaaacaattcaaaatctga |
34900609 |
T |
|
| Q |
643 |
acaaca |
648 |
Q |
| |
|
|||||| |
|
|
| T |
34900610 |
acaaca |
34900615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 167 - 342
Target Start/End: Complemental strand, 4784556 - 4784381
Alignment:
| Q |
167 |
ctgatccttaacattagtgacagctactttccacctccaatccaaggatgaaggagcagcattgccagatgatgagggaatatccttcaccttcattgtg |
266 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||| |
|
|
| T |
4784556 |
ctgatccttaacattagtgacagctcctttcaacctccaatccaaggatgaaggagcagcattgcatgatgatgaggcaatatcattcaacttcattgtg |
4784457 |
T |
|
| Q |
267 |
gcattgatcatggacatttctggcttgtgtaaaattcattctttaaactcttgggggctccaaccaacaaagttgg |
342 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
4784456 |
tcattgatcatggacatgtcaagcttgtgtaacattctttctttaaactcttgggggctccaatcagcaaagttgg |
4784381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 4784688 - 4784645
Alignment:
| Q |
35 |
ttttaaaatagttcttgttattaagagtatcaattaatttccct |
78 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4784688 |
ttttataatagttcatgttattaagagtatcaattaatttccct |
4784645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University