View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455-Insertion-6 (Length: 666)
Name: NF4455-Insertion-6
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 266 - 666
Target Start/End: Complemental strand, 37258214 - 37257814
Alignment:
| Q |
266 |
gatgaagttgacgttggatagtggataatgatgattgtgcatatttgccactttgtactcatctaaattgtcaagttcaattgattgactttaaggatag |
365 |
Q |
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| T |
37258214 |
gatgaagttgacgttggatagtggataatgatgattgtgcatatttgccactttgtactcatctaaattgtcaagttcaattgattgactttaaggatag |
37258115 |
T |
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| Q |
366 |
ttttaggcatgcatctaatgattgaatgatagtttgggaacaacaattttgttgtggtaaattagtgagttcttgttagatgtcaatgtaaaatgttttg |
465 |
Q |
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| T |
37258114 |
ttttaggcatgcatctaatgattgaatgatagtttgggaacaacaattttgttgtggtaaattagtgagttcttgttagatgtcaatgtaaaatgttttg |
37258015 |
T |
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| Q |
466 |
catagacaacgcacatccattaattttatattaagtttaattagttggtatactcagtgaggatacaattattacttatatatttaatgatctgctgcca |
565 |
Q |
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| T |
37258014 |
catagacaacgcacatccattaattttatattaagtttaattagttggtatactcagtgaggatacaattattacttatatatttaatgatctgctacca |
37257915 |
T |
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| Q |
566 |
caccaaattaaatttttgtaggggatgacaaattaaacttttttagagttgacaaatgacaaccaattttacatcatccaatcatcattatatattacta |
665 |
Q |
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| T |
37257914 |
caccaaattaaatttttgtaggagatgacaaattaaacttttttagagttgacaaatgacaaccaattttacaccatccaatcatcattacatattacta |
37257815 |
T |
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| Q |
666 |
g |
666 |
Q |
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| T |
37257814 |
g |
37257814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 37258466 - 37258264
Alignment:
| Q |
8 |
tttacagtgttgagcctcttgttgagcttttcaagaattcggttttggttcatgttcgtaaagttgatggttttggattggatacggaagttgcgtttcg |
107 |
Q |
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| T |
37258466 |
tttacagtgttgagcctcttgttgagcttttcaagaattcggttttggttcatgttcgtaaagttgatggttttggattggatacggaagttgcgtttcg |
37258367 |
T |
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| Q |
108 |
caagaaaccaccacccactcatcgtcggttctaacatatcagcaatgatacagacaagacaccgattcatgagaaatgttggtgctggagaattcttaat |
207 |
Q |
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| T |
37258366 |
caagaaaccaccacccactcatcgtcggttctaacatatcagcaatgatacagacaagacaccgattcatgagaaatgttggtgctggagaattcttaat |
37258267 |
T |
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| Q |
208 |
tac |
210 |
Q |
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||| |
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| T |
37258266 |
tac |
37258264 |
T |
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