View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455-Insertion-7 (Length: 645)
Name: NF4455-Insertion-7
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 43463143 - 43463504
Alignment:
| Q |
7 |
ataagagagtgttatgggccagaagctgatgtgtggagtgcaggtgtgatcatatactttctcttatgtggagcacctccctttgatggtggtaagttat |
106 |
Q |
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| T |
43463143 |
ataagagagtgttatgggccagaagctgatgtgtggagtgcgggtgtgatcatatactttttcttatgtggagcacctccatttgatggtggtaagttat |
43463242 |
T |
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| Q |
107 |
cttcatgatctttacgttttgtttcatttctattcccnnnnnnnn--gcttcatataaaaatagtggattttgattttgttctttggtaatagaattgga |
204 |
Q |
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| T |
43463243 |
cttcatgatctttacgttttgtttcatttctattcccttttttttttgcttcatataaaaatagtggattttgattttgttctttggtaatagaattgga |
43463342 |
T |
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| Q |
205 |
gcaagagatatttgataaggttttacatggtgaaattgatttctcttcggatccttggctaagtatttctgaaagtgccaaagacttggttaagaagatg |
304 |
Q |
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| T |
43463343 |
gcaagagatatttgataaggttttacatggtgaaattgatttctcttcggatccttggccaagtatttctgaaagtgccaaagacttggttaagaagatg |
43463442 |
T |
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| Q |
305 |
cttgatagagatcctaaaacacgaattacagcacatgaagctctaagtaagtttcaccactc |
366 |
Q |
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| T |
43463443 |
cttgatagagatcctaaaacacgaattacagcacatgaagctctaagtaagtttcaccactc |
43463504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 366
Target Start/End: Original strand, 43454435 - 43454788
Alignment:
| Q |
12 |
agagtgttatgggccagaagctgatgtgtggagtgcaggtgtgatcatatactttctcttatgtggagcacctccctttgatggtggtaagttatcttca |
111 |
Q |
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| T |
43454435 |
agagtgttatgggccagaagctgatgtatggagtgcaggtgtgatcatatacattctcttatgtggaacacctcccttttatggtggtaagatatcttca |
43454534 |
T |
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| Q |
112 |
tgatctttacgttttgtttcatttctattcccnnnnnnnngcttcatataaaaatagtggattttgattttgttctttggtaatagaattggagcaagag |
211 |
Q |
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| T |
43454535 |
cgatcttttctttttgtttcatttcttttcccttttttt-gtttcatataataatagaggattttgattatgttctttggtaatagaattggatcgagag |
43454633 |
T |
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| Q |
212 |
atatttgataaggttttacatggtgaaattgatttctcttcggatccttggctaagtatttctgaaagtgccaaagacttggttaagaagatgcttgata |
311 |
Q |
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| T |
43454634 |
atatttgatgaggttttacatggtgaagttgatttctgttccgatccttggccaagtatatctgaaagtgccaaagacttggttaagaagatgcttgata |
43454733 |
T |
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| Q |
312 |
gagatcctaaaacacgaattacagcacatgaagctctaagtaagtttcaccactc |
366 |
Q |
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| T |
43454734 |
gagatcctaaaacacgaattaaagctcatgaagttctaagtaagtttcactactc |
43454788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 472 - 645
Target Start/End: Original strand, 43463610 - 43463783
Alignment:
| Q |
472 |
ctagtgttttttattgtttatggttgttgcatcttcagctattacagttgtttttaagagagaaaaaattacacatttaccgcttgatttttaatcacta |
571 |
Q |
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| T |
43463610 |
ctagtgttttttattgtttatggttgttgcatcttcagctattacagttgtttttaagagagaaaaaattacacatttaccgcttgatttttaatcacta |
43463709 |
T |
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| Q |
572 |
aacttaccgcattaattgtttaattatacagaacattaacttttattaccatattgtgaatgatgattttccaa |
645 |
Q |
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| T |
43463710 |
aacttaccgcattaattgtttaattatacagaacattaacttttattaccatattgtgaatgatgattttccaa |
43463783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 472 - 645
Target Start/End: Original strand, 43454887 - 43455062
Alignment:
| Q |
472 |
ctagtgttttttattgtttatggttgttgcatcttcagctattacagttgtttttaagagagaaaaaat---tacacatttaccgcttgatttttaatca |
568 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| || ||||||| |||||||||||| |||| |
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| T |
43454887 |
ctagtgctttttattgtttatggttgttgcatcttcagctattgcaattgtttttaaga-agaaaaaataaataaacatttagcgcttgatttttcatca |
43454985 |
T |
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| Q |
569 |
ctaaacttaccgcattaattgtttaattatacagaacattaacttttattaccatattgtgaatgatgattttccaa |
645 |
Q |
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| T |
43454986 |
ctaaatctgtcgcattaattgtttaattatgcagaacatgaatttttgttactaaattgtgaatgatgatgttccaa |
43455062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 24419939 - 24419871
Alignment:
| Q |
240 |
ttgatttctcttcggatccttggctaagtatttctgaaagtgccaaagacttggttaagaagatgcttg |
308 |
Q |
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| T |
24419939 |
ttgatttctcatcggatccatggcctagtatctctgaaagtgcaaaagacttggttaagaagatgcttg |
24419871 |
T |
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