View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4455-Insertion-8 (Length: 486)
Name: NF4455-Insertion-8
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 4 - 480
Target Start/End: Complemental strand, 21123226 - 21122750
Alignment:
| Q |
4 |
aacatacagcacatcagaaatatcagttctgctgctctattttgtaaacactcatagctggacttgatacaatttaaagcatcgctctctcctccttcat |
103 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21123226 |
aacatacagcacatcagaaatatctgttctgcttctctattttgtaaacactcatagctggacttgatacaatttaaagcatcgctctctcctccttcat |
21123127 |
T |
|
| Q |
104 |
gatcatcagatgcctttgaaaccatcaacttagataatgttgaattccactcagtattatcctttccttttaaggaagaagacatagttttgattgctaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21123126 |
gatcatcagatgcctttgaaaccatcaacttagctaatgttgaattccactcattattatcctttccttttaaggaagaagacatagttttgattgctaa |
21123027 |
T |
|
| Q |
204 |
gggaagtcccttgcattcatagcagatttcttgtggtacaccatctaatgacacagagaattcgtcatcaattactgcaagcttttggaagaatgtccag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21123026 |
gggaagtcccttgcattcatagcagatttcttgtggtacaccatctaatgacacagagaattcgtcatcaattactgcaagcttttggaagaatgtccag |
21122927 |
T |
|
| Q |
304 |
gattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattacaaacattctcaatacgtgtggttacaaggattttcaatgcac |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21122926 |
gattcatctttggacaagagccccaaatgaatcatcttgtgacaattcattaaaatacaaacattctcaatacgtgtggttacaaggattttcaatgcac |
21122827 |
T |
|
| Q |
404 |
ctctattaccattgtttaagcgaatccctgtatccttcaaatgaaactctctccatagattgtctactatgataaga |
480 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
21122826 |
ctctattatcattgtataagcgaatccctgtatccttcaaatgaaactctctccatagattgtcaactattataaga |
21122750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 385
Target Start/End: Complemental strand, 21115616 - 21115418
Alignment:
| Q |
187 |
atagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatctaatgacacagagaattcgtcatcaattactgcaagct |
286 |
Q |
| |
|
||||||||||||| |||||||||||| || || |||| ||||| ||| |||| |||||||| ||| || ||| |||||||||||||| ||||| || |
|
|
| T |
21115616 |
atagttttgattgataagggaagtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaact |
21115517 |
T |
|
| Q |
287 |
tttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattacaaacattctcaatacgtgtggtta |
385 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| | |||| | |||| |||| |||| |||| ||||||| |
|
|
| T |
21115516 |
tttggaataatgtccaagattcatcttcagacaagagccccaaatgaatcttcttttgacagtccattgatgtacagacatgctcattacgagtggtta |
21115418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 460
Target Start/End: Original strand, 21715310 - 21715620
Alignment:
| Q |
150 |
ccactcagtattatcctttccttttaaggaagaagacatagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatct |
249 |
Q |
| |
|
||||||| | |||| ||||||||||||| |||| | ||||||| || |||| ||| |||||||| |||| || ||||| |||| |||| |||||||| |
|
|
| T |
21715310 |
ccactcacttttatgctttccttttaagcaagacgccatagttacaatagctaggggcagtcccttacatttatcgcagagttctcgtggcacaccatcc |
21715409 |
T |
|
| Q |
250 |
aatgacacagagaattcgtcatcaattactgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaat |
349 |
Q |
| |
|
| |||| || || | |||| ||| |||| |||||||||| || ||||||||||||||||| || |||||| ||| ||||| ||||||||||| | |
|
|
| T |
21715410 |
attgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataagagcgccaggtgaatattcttttgacagt |
21715509 |
T |
|
| Q |
350 |
tcattaaattacaaacattctcaatacgtgtggttacaaggattttcaatgcacctctattaccattgtttaagcgaatccctgtatccttcaaatgaaa |
449 |
Q |
| |
|
||||||| | || || | || | |||| |||||||||||||||||| |||| || | ||| |||||| || | |||||||| ||| | |||||| ||| |
|
|
| T |
21715510 |
ccattaaagtgcatacttgctgattacgagtggttacaaggattttccatgcgcccttgttaacattgtctatgtgaatccctatattcatcaaattaaa |
21715609 |
T |
|
| Q |
450 |
ctctctccata |
460 |
Q |
| |
|
|||| |||||| |
|
|
| T |
21715610 |
ctctttccata |
21715620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 392
Target Start/End: Complemental strand, 21622576 - 21622463
Alignment:
| Q |
279 |
tgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattacaaacattctcaatacgt |
378 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||| || || ||| | | |||||| ||||||||||| | |||| || | || || | || | |||| |
|
|
| T |
21622576 |
tgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttgacagtccattgaagtgcatacttgctgattacga |
21622477 |
T |
|
| Q |
379 |
gtggttacaaggat |
392 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21622476 |
gtggttacaaggat |
21622463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 392
Target Start/End: Complemental strand, 21644290 - 21644177
Alignment:
| Q |
279 |
tgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattacaaacattctcaatacgt |
378 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||| || || ||| | | |||||| ||||||||||| | |||| || | || || | || | |||| |
|
|
| T |
21644290 |
tgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttgacagtccattgaagtgcatacttgctgattacga |
21644191 |
T |
|
| Q |
379 |
gtggttacaaggat |
392 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21644190 |
gtggttacaaggat |
21644177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 480
Target Start/End: Complemental strand, 21115363 - 21115323
Alignment:
| Q |
440 |
tcaaatgaaactctctccatagattgtctactatgataaga |
480 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
21115363 |
tcaaatgaaactctctccatagatcgtccactattataaga |
21115323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 473
Target Start/End: Original strand, 23010392 - 23010535
Alignment:
| Q |
330 |
atgaatcttcttttgacaattcattaaattacaaacattctcaatacgtgtggttacaaggattttcaatgcacctctattaccattgtttaagcgaatc |
429 |
Q |
| |
|
|||||||||||||||||| | ||| | || ||| |||| | | |||| |||||| ||||||| ||| ||||||| | ||| |||||| |||||||||| |
|
|
| T |
23010392 |
atgaatcttcttttgacagtgcatcagatcacatacatgttgattacgagtggttgcaaggatcttccatgcacccttgttatcattgtctaagcgaatc |
23010491 |
T |
|
| Q |
430 |
cctgtatccttcaaatgaaactctctccatagattgtctactat |
473 |
Q |
| |
|
||| ||| ||||||| |||||||||||||| || |||||||| |
|
|
| T |
23010492 |
cctacatcgttcaaatcaaactctctccataaatcatctactat |
23010535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University