View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455-Insertion-9 (Length: 471)
Name: NF4455-Insertion-9
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455-Insertion-9 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 6 - 471
Target Start/End: Original strand, 34292345 - 34292807
Alignment:
| Q |
6 |
cactccgcccatcccacaaatgctaatcatatattgacttgatcatccttgagtttctctatgacctctttataatcttctcccaagacaataagctctt |
105 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34292345 |
cactccgcccatcccacaaatgctaatcatat--tgacttgatcatccttgagtttctctatgacctctttataatcttctccctagacaataagctctt |
34292442 |
T |
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| Q |
106 |
gatattttttgtataggtagatccaagtgttaatggaggtttagggtatgaaataacttgaaatttgttttcttctttccttcatgcttgtaatattttc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34292443 |
gatattttttgtataggtagatccaagtgttaatggaggtttagggtatgaaataacttgaaatttgttttcttctt-ccttcatgcttgtaatattttc |
34292541 |
T |
|
| Q |
206 |
aaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtccaccaaagcattttttgctatttttaatactattttcatca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
34292542 |
aaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtcaaccaaagcattttttgctatttttaactctattttcatca |
34292641 |
T |
|
| Q |
306 |
gagagccacttttgcaactgatcttcaattgttgtcacttcatagagccatttttgcacattaggtgcaatttcatatcctttccttctttcagtttcaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292642 |
gagagccacttttgcaactgatcttcaattgttgtcacatcatagacccatttttgcatattaggtgcaatttcatatcctttccttctttcagtttcaa |
34292741 |
T |
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| Q |
406 |
cccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtga |
471 |
Q |
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| T |
34292742 |
cccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtga |
34292807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 34566893 - 34567148
Alignment:
| Q |
6 |
cactccgcccatcccacaaatgctaatcatatattgacttgatcatccttgagtttctctatgacctctttataatcttctcccaagacaataagctctt |
105 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34566893 |
cactccgcccatcccacagatgctaatcatat--tgacttgatcatccttgagtttctctatgacctctttataatcttctccctagacaataagctctt |
34566990 |
T |
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| Q |
106 |
gatattttttgtataggtagatccaagtgttaatggaggtttagggtatgaaataacttgaaatttgttttcttctttccttcatgcttgtaatattttc |
205 |
Q |
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| T |
34566991 |
gatattttttgtataggtagatccaagtgttaatggaggtttggggtatgaaataacttgaaatttgttttcttc-ttccttcatgcttgtaatattttc |
34567089 |
T |
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| Q |
206 |
aaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtc |
264 |
Q |
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| T |
34567090 |
aaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtc |
34567148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 300 - 471
Target Start/End: Original strand, 34567147 - 34567318
Alignment:
| Q |
300 |
tcatcagagagccacttttgcaactgatcttcaattgttgtcacttcatagagccatttttgcacattaggtgcaatttcatatcctttccttctttcag |
399 |
Q |
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||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567147 |
tcatcagagagccacttttgcaactcattttcaattgttgtgacatcatagagccatttttgcacattaggtgcaatttcatatcctttccttctttcag |
34567246 |
T |
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| Q |
400 |
tttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtga |
471 |
Q |
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| T |
34567247 |
tttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtga |
34567318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 34555400 - 34555494
Alignment:
| Q |
183 |
tccttcatgcttgtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtccaccaaagcattt |
277 |
Q |
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||||||| ||| |||||| ||||| |||||||| ||||| |||||||||||| |||||| ||| ||||||| || | ||||||||| ||||| |
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| T |
34555400 |
tccttcaaccttataatatattcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacattt |
34555494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 7 - 436
Target Start/End: Original strand, 15896569 - 15896996
Alignment:
| Q |
7 |
actccgcccatcccacaaatgctaatcatatattgacttgatcatccttgagtttctctatgacctct-ttataatcttctcccaagacaataagctctt |
105 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| ||||||| || || | |||||||| |||||| |
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| T |
15896569 |
actccgcccatcccacaaatgctaatcattt--tgacttgatcatccttgagcttctctatgacctctgttataattttttctctagacaataggctctt |
15896666 |
T |
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| Q |
106 |
gatattttttgtataggtagatccaagtgttaatggaggtttagggtatgaaataacttgaaatttgttttcttctttccttcatgcttgtaatattttc |
205 |
Q |
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|| || |||||| ||||||||||||||||||||| || ||||||||| || ||| ||| ||||||||||| ||| | |||||| ||||||||||| ||| |
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| T |
15896667 |
gacatcttttgtgaaggtagatccaagtgttaatgaagctttagggtaagatatatctttaaatttgtttttttcct-ccttcaggcttgtaatatattc |
15896765 |
T |
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| Q |
206 |
aaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtccaccaaagcattttttgctatttttaatactattttcatca |
305 |
Q |
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| |||||||| |||| |||||||||||| ||||||||||||| || ||| |||||||||||||| ||||| || | || |||| | ||||||||| | |
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| T |
15896766 |
tatccttttagttgcttgctttcccaatgagtaattaaatgctatatctgaacattgtccaccaaaacatttcttcttcttgttaacattattttcatta |
15896865 |
T |
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| Q |
306 |
gagagccacttttgcaactgatcttcaattgttgtcacttcatagagccatttttgcacattaggtgcaatttcatatcctttccttctttcagtttcaa |
405 |
Q |
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|||| ||| |||||| ||| || |||||| ||||||| ||| | |||||||||||||| | ||| ||||||||| ||| |||||||||||| | || | |
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| T |
15896866 |
gagatccatttttgccactcattttcaataattgtcacatcagatagccatttttgcacgatgggttcaatttcatgtcccttccttctttcattgtcca |
15896965 |
T |
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| Q |
406 |
cccttgtttgcaatgcttgttttatcatttt |
436 |
Q |
| |
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|| ||||||||||||||||||| |||||||| |
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| T |
15896966 |
cctttgtttgcaatgcttgtttcatcatttt |
15896996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 129386 - 129302
Alignment:
| Q |
193 |
ttgtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtccaccaaagcattt |
277 |
Q |
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||||||||| |||| |||||||| ||||| |||||||||||| |||||| ||| ||||||| || | ||||||||| ||||| |
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| T |
129386 |
ttgtaatatactcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacattt |
129302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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