View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4455_high_1 (Length: 516)

Name: NF4455_high_1
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4455_high_1
NF4455_high_1
[»] chr1 (10 HSPs)
chr1 (25-190)||(17619023-17619190)
chr1 (275-317)||(6212269-6212311)
chr1 (275-317)||(35718637-35718679)
chr1 (275-338)||(7287071-7287134)
chr1 (275-317)||(4402051-4402093)
chr1 (277-323)||(17391510-17391556)
chr1 (275-317)||(23757125-23757167)
chr1 (275-323)||(3839169-3839217)
chr1 (275-323)||(41157874-41157922)
chr1 (275-323)||(45756052-45756100)
[»] chr6 (3 HSPs)
chr6 (275-317)||(8351086-8351128)
chr6 (275-317)||(6248669-6248711)
chr6 (275-316)||(24556476-24556517)
[»] chr7 (4 HSPs)
chr7 (275-323)||(40727000-40727048)
chr7 (275-317)||(23152698-23152740)
chr7 (275-317)||(42978327-42978369)
chr7 (275-308)||(32555622-32555655)
[»] chr5 (3 HSPs)
chr5 (275-323)||(12579953-12580001)
chr5 (275-323)||(16844353-16844401)
chr5 (275-323)||(16885659-16885707)
[»] chr2 (1 HSPs)
chr2 (275-323)||(5880447-5880495)
[»] chr4 (2 HSPs)
chr4 (275-317)||(37243901-37243943)
chr4 (275-316)||(24387748-24387789)
[»] chr8 (3 HSPs)
chr8 (275-323)||(2374490-2374538)
chr8 (275-323)||(10812102-10812150)
chr8 (275-338)||(22738794-22738857)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 17619190 - 17619023
Alignment:
Q  25 acataatatattttagttatttatat--ctaatcaaaatcataacaaaatgtttcttcctttttatccatccaagaggaaataggtctggacgaccgatt 122  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||||||    
T  17619190 acataatatattttagttatttatatatctaatcaaaatcataacaaaatgtttattcctttttatccttcaaagtggaaataggtctggacgaccgatt 17619091  T
Q  123 gacaagaacctacaacctaaatcggtttatgtcaaacannnnnnnnnaattgagatgataaagatgtt 190  Q
    |||||||||||| |||||||||||||| | ||||||||         |||||||||||||||||||||    
T  17619090 gacaagaacctagaacctaaatcggttaaagtcaaacatttttttttaattgagatgataaagatgtt 17619023  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 6212269 - 6212311
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaatt 317  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  6212269 tattattatattaaattttgcactttgaattaaattataaatt 6212311  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 35718679 - 35718637
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaatt 317  Q
    |||||||||| || |||||||||||||||||||||||||||||    
T  35718679 tattattataatatattttacactttgaattaaattataaatt 35718637  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 7287071 - 7287134
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaatatctttagtaattt 338  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| ||||| || |||| ||||||    
T  7287071 tattattatattatattttgtactttgaattaaaatataaatttgtaaacatttttaataattt 7287134  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 4402051 - 4402093
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaatt 317  Q
    ||||||||||||| |||||| |||||||||| |||||||||||    
T  4402051 tattattatattatattttatactttgaattcaattataaatt 4402093  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 17391510 - 17391556
Alignment:
Q  277 ttattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||| |||||| ||||||||||||||| |||||| |||||    
T  17391510 ttattatattatattttatactttgaattaaattttaaatttgtaaa 17391556  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 23757125 - 23757167
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaatt 317  Q
    ||||||||||||| |||||  ||||||||||||||||||||||    
T  23757125 tattattatattatattttgtactttgaattaaattataaatt 23757167  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 3839169 - 3839217
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||    
T  3839169 tattattatattatattttgtactttgaattaaaatataaatttgtaaa 3839217  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 41157874 - 41157922
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||    
T  41157874 tattattatattatattttgtactttgaattaaaatataaatttgtaaa 41157922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 45756052 - 45756100
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||    
T  45756052 tattattatattatattttgtactttgaattaaaatataaatttgtaaa 45756100  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 8351086 - 8351128
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaatt 317  Q
    ||||||||||||| |||||| ||||||||||||||||||||||    
T  8351086 tattattatattatattttatactttgaattaaattataaatt 8351128  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 6248669 - 6248711
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaatt 317  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||    
T  6248669 tattattatattatattttgcactttgaattaaaatataaatt 6248711  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 24556476 - 24556517
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaat 316  Q
    ||||||||||||| |||||| ||||||||||||| |||||||    
T  24556476 tattattatattatattttatactttgaattaaaatataaat 24556517  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 40727000 - 40727048
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||||| |||||| ||||||||||||| |||||||| |||||    
T  40727000 tattattatattaaattttatactttgaattaaaatataaatttgtaaa 40727048  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 23152698 - 23152740
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaatt 317  Q
    ||||||||||||| |||||| |||||||||||||||| |||||    
T  23152698 tattattatattatattttatactttgaattaaattaaaaatt 23152740  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 42978369 - 42978327
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaatt 317  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||    
T  42978369 tattattatattaaattttatacttttaattaaattataaatt 42978327  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 32555622 - 32555655
Alignment:
Q  275 tattattatattagattttacactttgaattaaa 308  Q
    ||||||||||||| ||||||||||||||||||||    
T  32555622 tattattatattatattttacactttgaattaaa 32555655  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 12579953 - 12580001
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||||| |||||| ||||||||||||| |||||||| |||||    
T  12579953 tattattatattatattttatactttgaattaaaatataaatttgtaaa 12580001  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 16844353 - 16844401
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||    
T  16844353 tattattatattatattttgtactttgaattaaaatataaatttgtaaa 16844401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 16885707 - 16885659
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||    
T  16885707 tattattatattatattttgtactttgaattaaaatataaatttgtaaa 16885659  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 5880495 - 5880447
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||||| |||||| ||||||||||||| |||||||| |||||    
T  5880495 tattattatattatattttatactttgaattaaaatataaatttgtaaa 5880447  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 37243901 - 37243943
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaatt 317  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||    
T  37243901 tattattatattatatttttcactttgaattaaaatataaatt 37243943  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 24387789 - 24387748
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaat 316  Q
    ||||||||||||| |||||  |||||||||||||||||||||    
T  24387789 tattattatattaaattttgtactttgaattaaattataaat 24387748  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 2374538 - 2374490
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||    
T  2374538 tattattatattatattttgtactttgaattaaaatataaatttgtaaa 2374490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 10812150 - 10812102
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaattggtaaa 323  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||    
T  10812150 tattattatattatattttgtactttgaattaaaatataaatttgtaaa 10812102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 22738857 - 22738794
Alignment:
Q  275 tattattatattagattttacactttgaattaaattataaat-tggtaaatatctttagtaattt 338  Q
    ||||||||||||| |||||| ||||||||||||| || |||| |||||| | |||||||||||||    
T  22738857 tattattatattatattttatactttgaattaaaataaaaatatggtaact-tctttagtaattt 22738794  T

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