View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455_high_2 (Length: 502)
Name: NF4455_high_2
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 29 - 492
Target Start/End: Original strand, 41249644 - 41250097
Alignment:
| Q |
29 |
tacactgtaaatttgctctgttctctatcttttgatgaaataatggacggtctattactcagtaaaacatgtcaatatggcgaagacgtacaaattacat |
128 |
Q |
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| T |
41249644 |
tacactgtaaatttgctctgttctctatcttttgatgaaataatggacggtctattactcagtaaaacatgtcaatatggcgaagacgtacaaattacat |
41249743 |
T |
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| Q |
129 |
ttactcaacaaaaagacaagacggtatattttaaagaaattgcaaccgtagctttttgtgtgtgcatataaaaaaccagttgaataatgtatatttcatg |
228 |
Q |
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| T |
41249744 |
ttactcaacaaaaagacaagacggtatattttaaagaaattgcaaccgtagctttttgtgtgtgcatatataaaaccagttgaataatgtatatttcatg |
41249843 |
T |
|
| Q |
229 |
ctatgcaaaacatcataggatcactacattacaaatcacccctgtatcgattcatctttaaactcatcaaaatttgaaaatgtactcataatttttgtgg |
328 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41249844 |
ctatgcaaaacatcagaggatcactacattacaaatcccccctgtatcgattcatctttaaactcatcaaaatttgaaaatatactcataatttttgtgg |
41249943 |
T |
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| Q |
329 |
gacatcaatcatcacaatatcacatccagccagctgaaaataaagtaccaaatctgtgctgataactaccagtggcagaataaataaataccagtctcat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249944 |
gacatcaatcatcacaatatcacatccagccagctgaaaataaagtaccaaatctgtgctgataactaccagtggcagaataaataaataccagtctcat |
41250043 |
T |
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| Q |
429 |
aaaattcatctcaaataatacaaaacatttgatcatgtctttccaatgtctttaatttcatctc |
492 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
41250044 |
aaaattcatct---------caaaacatttgatcatgtctttcc-atgtctttaatttcttctc |
41250097 |
T |
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