View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4455_low_3 (Length: 289)

Name: NF4455_low_3
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4455_low_3
NF4455_low_3
[»] chr1 (2 HSPs)
chr1 (19-281)||(15241952-15242214)
chr1 (232-281)||(9599709-9599758)
[»] chr7 (7 HSPs)
chr7 (232-281)||(30200274-30200323)
chr7 (226-281)||(36514514-36514569)
chr7 (226-277)||(38135525-38135576)
chr7 (231-277)||(47848596-47848642)
chr7 (232-277)||(43491230-43491275)
chr7 (218-281)||(29653854-29653918)
chr7 (159-195)||(36514437-36514473)
[»] chr3 (6 HSPs)
chr3 (217-277)||(31337824-31337884)
chr3 (159-197)||(11581458-11581496)
chr3 (231-281)||(42510325-42510375)
chr3 (46-115)||(26990326-26990394)
chr3 (159-195)||(3987063-3987099)
chr3 (159-195)||(49841635-49841671)
[»] chr4 (8 HSPs)
chr4 (223-269)||(27991721-27991767)
chr4 (226-281)||(17900398-17900453)
chr4 (226-281)||(33191157-33191212)
chr4 (218-276)||(45423542-45423601)
chr4 (218-259)||(10208978-10209020)
chr4 (236-281)||(44860772-44860817)
chr4 (159-195)||(35555877-35555913)
chr4 (159-195)||(42285930-42285966)
[»] chr5 (3 HSPs)
chr5 (218-281)||(11002721-11002785)
chr5 (159-195)||(31636150-31636186)
chr5 (159-195)||(33667232-33667268)
[»] chr8 (4 HSPs)
chr8 (218-271)||(16252863-16252917)
chr8 (16-115)||(32043703-32043802)
chr8 (226-276)||(29520583-29520633)
chr8 (239-281)||(39760746-39760788)
[»] chr2 (5 HSPs)
chr2 (16-117)||(5759065-5759166)
chr2 (232-271)||(9556683-9556722)
chr2 (223-277)||(9579007-9579061)
chr2 (232-281)||(9647920-9647969)
chr2 (218-277)||(12734623-12734683)
[»] chr6 (3 HSPs)
chr6 (226-281)||(33083976-33084031)
chr6 (239-281)||(6293691-6293733)
chr6 (159-195)||(33084074-33084110)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 15242214 - 15241952
Alignment:
Q  19 aaaaaccatgtttttctctacttcattatctcttgatcctttttgatagttcctctaatagttttttctaggtctctccctgcatcaagtgatttgattt 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15242214 aaaaaccatgtttttctctgcttcattatctcttgatcctttttgatagttcctctaatagttttttttaggtctctccctgcatcaagtgatttgattt 15242115  T
Q  119 ccttactacagcatccatatgtcatctctcaattatacatccaaaccaccttcgtctagtttctaccatcttttctattttatttactacaattttctct 218  Q
    |||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  15242114 ccttactacaacatccatatgtcatctctcagttatatatccaaaccaccttagtctagtttataccatcttttctactttatttactacaactttctct 15242015  T
Q  219 gtcattttaattctatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15242014 gtcatttttattctatcccatctaatcttaccacacatccaccataacatccttatctctgct 15241952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 9599709 - 9599758
Alignment:
Q  232 tatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    |||||| |||| ||||||||| |||||| ||||||||||| |||||||||    
T  9599709 tatcccgtctagtcttaccactcatccaacacaacatcctcatctctgct 9599758  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 30200274 - 30200323
Alignment:
Q  232 tatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  30200274 tatcccatctaatcttaccacacatccaacacaacatcctcatctctgct 30200323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 36514514 - 36514569
Alignment:
Q  226 taattctatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    |||||||||||| | || |||||||||||||||| | ||||||||| |||||||||    
T  36514514 taattctatcccgtttagtcttaccacacatccaacgcaacatcctcatctctgct 36514569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 38135525 - 38135576
Alignment:
Q  226 taattctatcccatctaatcttaccacacatccaccacaacatccttatctc 277  Q
    |||| ||||||||||||||||||||||||||||| || || ||||| |||||    
T  38135525 taatcctatcccatctaatcttaccacacatccaacaaaagatcctcatctc 38135576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 47848642 - 47848596
Alignment:
Q  231 ctatcccatctaatcttaccacacatccaccacaacatccttatctc 277  Q
    ||||||| |||| |||||||||||||||| ||||||||||| |||||    
T  47848642 ctatcccgtctagtcttaccacacatccaacacaacatcctcatctc 47848596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 43491275 - 43491230
Alignment:
Q  232 tatcccatctaatcttaccacacatccaccacaacatccttatctc 277  Q
    ||||||||||||||||||| | |||||| ||||||||||| |||||    
T  43491275 tatcccatctaatcttaccgctcatccagcacaacatcctcatctc 43491230  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 29653854 - 29653918
Alignment:
Q  218 tgtcattt-taattctatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    |||||||| |||||||||||| |||| | |||||||||||||| | ||||| || ||||||||||    
T  29653854 tgtcatttctaattctatcccgtctagtgttaccacacatccaacgcaacagccgtatctctgct 29653918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 36514437 - 36514473
Alignment:
Q  159 ccaaaccaccttcgtctagtttctaccatcttttcta 195  Q
    |||||||||||  ||||||||||||||||||||||||    
T  36514437 ccaaaccacctaagtctagtttctaccatcttttcta 36514473  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 31337824 - 31337884
Alignment:
Q  217 ctgtcattttaattctatcccatctaatcttaccacacatccaccacaacatccttatctc 277  Q
    ||||||||||||| |||||||||||| ||||| |||||||||| ||||| |||||||||||    
T  31337824 ctgtcattttaatcctatcccatctagtcttatcacacatccaacacaagatccttatctc 31337884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 11581496 - 11581458
Alignment:
Q  159 ccaaaccaccttcgtctagtttctaccatcttttctatt 197  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  11581496 ccaaaccacctaagtctagtttctaccatcttttctatt 11581458  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 42510325 - 42510375
Alignment:
Q  231 ctatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    |||||||||||| ||||||||||||||||   ||||||||| |||||||||    
T  42510325 ctatcccatctagtcttaccacacatccaatgcaacatcctcatctctgct 42510375  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 26990394 - 26990326
Alignment:
Q  46 atctcttgatcctttttgatagttcctctaatagttttttctaggtctctccctgcatcaagtgatttga 115  Q
    |||||| ||||||| ||||||||| |||||||||| ||||||||||||  |||| | || ||||||||||    
T  26990394 atctctagatccttcttgatagtttctctaatagt-ttttctaggtcttcccctacctcgagtgatttga 26990326  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 3987099 - 3987063
Alignment:
Q  159 ccaaaccaccttcgtctagtttctaccatcttttcta 195  Q
    |||||||||||  ||||||||||||||||||||||||    
T  3987099 ccaaaccacctaagtctagtttctaccatcttttcta 3987063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 49841671 - 49841635
Alignment:
Q  159 ccaaaccaccttcgtctagtttctaccatcttttcta 195  Q
    |||||||||||| |||||||||| |||||||||||||    
T  49841671 ccaaaccaccttagtctagtttccaccatcttttcta 49841635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 27991721 - 27991767
Alignment:
Q  223 ttttaattctatcccatctaatcttaccacacatccaccacaacatc 269  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  27991721 ttttaattctatctcatctaatcttaccacacatccaacacaacatc 27991767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 17900453 - 17900398
Alignment:
Q  226 taattctatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    ||||| ||||||||||| |||||||||||||||| | ||||||||| || ||||||    
T  17900453 taattttatcccatctagtcttaccacacatccaacgcaacatcctcatttctgct 17900398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 33191157 - 33191212
Alignment:
Q  226 taattctatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    |||| |||||| ||||||||||||||| |||||| | ||||||||| |||||||||    
T  33191157 taatcctatcctatctaatcttaccactcatccagcgcaacatcctcatctctgct 33191212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 45423601 - 45423542
Alignment:
Q  218 tgtcattt-taattctatcccatctaatcttaccacacatccaccacaacatccttatct 276  Q
    |||||||| |||||||||||| |||| |||||||||||| ||| ||||||||||| ||||    
T  45423601 tgtcatttctaattctatcccgtctagtcttaccacacaaccaacacaacatcctcatct 45423542  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 10209020 - 10208978
Alignment:
Q  218 tgtcattt-taattctatcccatctaatcttaccacacatcca 259  Q
    |||||||| ||||||||||||||||| ||||||||||||||||    
T  10209020 tgtcatttctaattctatcccatctagtcttaccacacatcca 10208978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 44860817 - 44860772
Alignment:
Q  236 ccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    ||||||| |||||||||||||||| ||||||||||| || ||||||    
T  44860817 ccatctagtcttaccacacatccaacacaacatcctcatttctgct 44860772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 35555877 - 35555913
Alignment:
Q  159 ccaaaccaccttcgtctagtttctaccatcttttcta 195  Q
    |||||||||||  ||||||||||||||||||||||||    
T  35555877 ccaaaccacctaagtctagtttctaccatcttttcta 35555913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 42285930 - 42285966
Alignment:
Q  159 ccaaaccaccttcgtctagtttctaccatcttttcta 195  Q
    |||||||||||  ||||||||||||||||||||||||    
T  42285930 ccaaaccacctaagtctagtttctaccatcttttcta 42285966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 11002721 - 11002785
Alignment:
Q  218 tgtcattt-taattctatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    |||||||| ||||||||||||||||  |||||||||||||||| | ||||||||| |||||||||    
T  11002721 tgtcatttctaattctatcccatctcgtcttaccacacatccagcgcaacatcctcatctctgct 11002785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 31636150 - 31636186
Alignment:
Q  159 ccaaaccaccttcgtctagtttctaccatcttttcta 195  Q
    |||||||||||  ||||||||||||||||||||||||    
T  31636150 ccaaaccacctaagtctagtttctaccatcttttcta 31636186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 33667268 - 33667232
Alignment:
Q  159 ccaaaccaccttcgtctagtttctaccatcttttcta 195  Q
    |||||||||||  ||||||||||||||||||||||||    
T  33667268 ccaaaccacctaagtctagtttctaccatcttttcta 33667232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 16252917 - 16252863
Alignment:
Q  218 tgtcattt-taattctatcccatctaatcttaccacacatccaccacaacatcct 271  Q
    |||||||| ||||| |||| ||||||||||||||||||||||| |||||||||||    
T  16252917 tgtcatttctaattttatctcatctaatcttaccacacatccaacacaacatcct 16252863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 32043802 - 32043703
Alignment:
Q  16 atcaaaaaccatgtttttctctacttcatt-atctcttgatcctttttgatagttcctctaatagttttttctaggtctctccctgcatcaagtgatttg 114  Q
    |||||||||||||| |||||| |  ||||| |||| | ||||||| ||||||||| ||||||||||||||| |||||||  |||| | || |||||||||    
T  32043802 atcaaaaaccatgtctttctccaactcattgatctttagatccttcttgatagtttctctaatagtttttt-taggtcttcccctacctctagtgatttg 32043704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 29520633 - 29520583
Alignment:
Q  226 taattctatcccatctaatcttaccacacatccaccacaacatccttatct 276  Q
    |||| |||||||||||| |||||||||||||||| | ||||||||| ||||    
T  29520633 taatcctatcccatctagtcttaccacacatccaacgcaacatcctcatct 29520583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 39760746 - 39760788
Alignment:
Q  239 tctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||    
T  39760746 tctaatcctaccacacatccaacacaacatcctcatctctgct 39760788  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 5759065 - 5759166
Alignment:
Q  16 atcaaaaaccatgtttttctctacttcatt-atctcttgatcctttttgatagttcctctaatagttttttctaggtctctccctgcatcaagtgatttg 114  Q
    |||||||||||||| |||||| |  ||||| |||||| ||||||| ||| ||||| ||||||||| ||||||||||| | ||||| | || |||||||||    
T  5759065 atcaaaaaccatgtctttctccaactcattgatctctagatccttcttggtagtttctctaatag-tttttctaggtatttccctacctctagtgatttg 5759163  T
Q  115 att 117  Q
    |||    
T  5759164 att 5759166  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 9556683 - 9556722
Alignment:
Q  232 tatcccatctaatcttaccacacatccaccacaacatcct 271  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  9556683 tatcccgtctaatcttaccacacatccaacacaacatcct 9556722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 9579007 - 9579061
Alignment:
Q  223 ttttaattctatcccatctaatcttaccacacatccaccacaacatccttatctc 277  Q
    |||||||||||||  ||||| |||||||||||||||| | ||||||| |||||||    
T  9579007 ttttaattctatcatatctattcttaccacacatccaacgcaacatctttatctc 9579061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 9647920 - 9647969
Alignment:
Q  232 tatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    |||| |||||| |||||||||||||||| | ||||||||| |||||||||    
T  9647920 tatcacatctagtcttaccacacatccaacgcaacatcctcatctctgct 9647969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 12734683 - 12734623
Alignment:
Q  218 tgtcattt-taattctatcccatctaatcttaccacacatccaccacaacatccttatctc 277  Q
    |||||||| |||| ||||||| |||| ||||||||| |||||| ||||||||||| |||||    
T  12734683 tgtcatttctaatcctatcccgtctagtcttaccactcatccagcacaacatcctcatctc 12734623  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 33084031 - 33083976
Alignment:
Q  226 taattctatcccatctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    ||||||||||||||||| |||||||||||||||| | || |||||| || ||||||    
T  33084031 taattctatcccatctagtcttaccacacatccaacgcagcatcctcatttctgct 33083976  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 6293691 - 6293733
Alignment:
Q  239 tctaatcttaccacacatccaccacaacatccttatctctgct 281  Q
    |||||| |||||||||||||| ||||||||||| |||||||||    
T  6293691 tctaattttaccacacatccaacacaacatcctcatctctgct 6293733  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 33084110 - 33084074
Alignment:
Q  159 ccaaaccaccttcgtctagtttctaccatcttttcta 195  Q
    |||||||||||  ||||||||||||||||||||||||    
T  33084110 ccaaaccacctaagtctagtttctaccatcttttcta 33084074  T

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