View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455_low_4 (Length: 253)
Name: NF4455_low_4
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 39893266 - 39893487
Alignment:
| Q |
13 |
tgaagcgtcgttgccattaccacctgaacaagtatccatttatgggataccactccttgctgacgaaagaagtgacgtaattctgttgaaatttctgcgt |
112 |
Q |
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| T |
39893266 |
tgaagcgtcattgccattaccacctgaacaagtatccatttatgggataccactccttgctgacgaaacaagtgacgtaattctgttgaaatttctgcgt |
39893365 |
T |
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| Q |
113 |
gcaagagattttaaggtcaaagaggctttcacaatgatcaagaacacaattctctggagaaaagaatttggaatagaggagttaatggatgagaaactgg |
212 |
Q |
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| T |
39893366 |
gcaagagattttaaggtcaaagaggctttcacaatgatcaagaacacaattctctggagaaaagaatttggaatagaggagttaatggatgagaaactgg |
39893465 |
T |
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| Q |
213 |
gtgatgaattggagaaagtggt |
234 |
Q |
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| T |
39893466 |
gtgatgaattggagaaagtggt |
39893487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 44641841 - 44641962
Alignment:
| Q |
56 |
gggataccactccttgctgacgaaagaagtgacgtaattctgttgaaatttctgcgtgcaagagattttaaggtcaaagaggctttcacaatgatcaaga |
155 |
Q |
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| T |
44641841 |
gggataccactcctcgcagacgatagaaccgacgtgattctgttgaagtttctccgagccagagacttcaaagtgaaagaagcattcacaatgatcaaga |
44641940 |
T |
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| Q |
156 |
acacaattctctggagaaaaga |
177 |
Q |
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| T |
44641941 |
acactatccgttggagaaaaga |
44641962 |
T |
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