View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455_low_5 (Length: 243)
Name: NF4455_low_5
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 39733625 - 39733413
Alignment:
| Q |
14 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
113 |
Q |
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| T |
39733625 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
39733526 |
T |
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| Q |
114 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
213 |
Q |
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| T |
39733525 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
39733426 |
T |
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| Q |
214 |
cttagcaatcatc |
226 |
Q |
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||||||||||||| |
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| T |
39733425 |
cttagcaatcatc |
39733413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 39839333 - 39839545
Alignment:
| Q |
14 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
113 |
Q |
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| T |
39839333 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtga |
39839432 |
T |
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| Q |
114 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
213 |
Q |
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| T |
39839433 |
agttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgat |
39839532 |
T |
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| Q |
214 |
cttagcaatcatc |
226 |
Q |
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||||||||||||| |
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| T |
39839533 |
cttagcaatcatc |
39839545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 31290472 - 31290504
Alignment:
| Q |
20 |
ttgagtatatttgtaggtggcttgttgttgcta |
52 |
Q |
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| T |
31290472 |
ttgagaatatttgtaggtggcttgttgttgcta |
31290504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 29857685 - 29857471
Alignment:
| Q |
14 |
atgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggact---ttctgaattcaaagg |
110 |
Q |
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| T |
29857685 |
atgaagttgagtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattgaagggttaggtggtgaattcaaggg |
29857586 |
T |
|
| Q |
111 |
tgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcactt |
210 |
Q |
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|||| || || ||||||||||||| || ||||| ||| |||| ||| ||||||||| | |||||||| ||||| ||||||||||||||||| || ||| |
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| T |
29857585 |
tgaaattattcatgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctctt |
29857486 |
T |
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| Q |
211 |
gatcttagcaatcat |
225 |
Q |
| |
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|||||| |||||||| |
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| T |
29857485 |
gatctttgcaatcat |
29857471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 17407974 - 17408021
Alignment:
| Q |
15 |
tgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaa |
62 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
17407974 |
tgaagttgagtatatttgtaggtggcttgtggttgctaccggtgaaaa |
17408021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 17408116 - 17408175
Alignment:
| Q |
157 |
ggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatctt |
216 |
Q |
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||||| || ||||||||||||||||||||||||||||| |||||| | || ||||||||| |
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| T |
17408116 |
ggaaaaaatgttcttgttgttggatgtggaaattctggcatggaagtttctcttgatctt |
17408175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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