View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455_low_7 (Length: 239)
Name: NF4455_low_7
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43462927 - 43463148
Alignment:
| Q |
1 |
aactcttaaagcaattgattttggattgtctagtttcttcaaaccaggtatggaaataatccccttctccaatttataccaatctccaaccatttcttga |
100 |
Q |
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| T |
43462927 |
aactcttaaagcaattgattttggattgtctagtttcttcaaaccaggtatggaaataatccccttctccaatttataccaatctctaaccatttcttga |
43463026 |
T |
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| Q |
101 |
aacctactattggtactgtaatgatcatatatagtctttgtgactaacaatcttcttttgcaggagaaaaatttagtgatgcggtaggaagtccttatta |
200 |
Q |
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| T |
43463027 |
aacctactattggtactgtaatgataatatatagtctttgtgactaacaatcttctattgcaggagaaaaatttagtgatgcagtaggaagtccttatta |
43463126 |
T |
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| Q |
201 |
tatggcacctgaggttataaga |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
43463127 |
tatggcacctgaggttataaga |
43463148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 43454318 - 43454432
Alignment:
| Q |
102 |
acctactattggtactgtaatgatcatatatagtctttgtgactaacaatcttcttttgcaggagaaaaatttagtgatgcggtaggaagtccttattat |
201 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| || |||||| |||||||| |
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| T |
43454318 |
acctactattggt---gtaatgatcatatatagtctttgttactaacaatcttcttttacaggggaaaaatttagtgattttgtcggaagtgcttattat |
43454414 |
T |
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| Q |
202 |
atggcacctgaggttata |
219 |
Q |
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| T |
43454415 |
gttgcacctgaggttata |
43454432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 43453489 - 43453581
Alignment:
| Q |
2 |
actcttaaagcaattgattttggattgtctagtttcttcaaaccaggtatggaaataatccccttctccaatttataccaatctccaaccatt |
94 |
Q |
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||||||| ||||||||||||||| |||| | |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
43453489 |
actcttatggcaattgattttggactgtccattttcttcaaaccaggtttggaaataatccccttctccaaattataccaatctctaaccatt |
43453581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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