View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455_low_8 (Length: 238)
Name: NF4455_low_8
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 38697561 - 38697700
Alignment:
| Q |
78 |
aatgtttcttcattcttattttttaaagttattgtaatatgatgatcttcgggatatgtttgtctatttattatcacatttaaatcagataccaaaacaa |
177 |
Q |
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| T |
38697561 |
aatgtttcttcattcttattttttaaagttattgtaatatgatgatcttcgggatatgtttgtctatttattatcacatttaaatcagataccaaaacaa |
38697660 |
T |
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| Q |
178 |
tacatacaataaaaaggtcgttgccctatcaagttcagca |
217 |
Q |
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| T |
38697661 |
tacatacaataaaaaggtcgttgccctatcaagttcagca |
38697700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 38697415 - 38697484
Alignment:
| Q |
11 |
agcataggagaaaaactgataaaaatggtgtagcacgcttattagcaagagcaacggttatagctataat |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697415 |
agcataggagaaaaactgataaaaatggtgtagcacgcttattagcaagagcaacggttatagctataat |
38697484 |
T |
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