View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4455_low_9 (Length: 236)
Name: NF4455_low_9
Description: NF4455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4455_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1428165 - 1428385
Alignment:
| Q |
1 |
cttgtgactaaactcttgtggcttttttaaaaggggcaactccctgaattttctaatggtaggtttc-acaatataaataagtctttagaatcgtttgca |
99 |
Q |
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| T |
1428165 |
cttgtgactaaactcttgtggcttttttaaaaggggcaactccctgaattttctaatggtagggttccacaatataaataagtctttagaatcgtttgca |
1428264 |
T |
|
| Q |
100 |
atacaaaggatgccattgcaagagccaattatgaagcaattcagatcaaaccgaatataatccccaaaataggcgggtataatctcaaactgtgagacat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||| | |
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| T |
1428265 |
atacaaaggatgccattgcaagagccaattatgaagcaattcagatcaaaccgaagataatctccaaaataggtgggtataatctcaaactgtgagacgt |
1428364 |
T |
|
| Q |
200 |
tactggttatgttggtgaaaa |
220 |
Q |
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||||||||||||||||||||| |
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| T |
1428365 |
tactggttatgttggtgaaaa |
1428385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 2067534 - 2067642
Alignment:
| Q |
20 |
ggcttttttaaaaggggcaactccctgaattttctaatggtaggttt-cacaatataaataagtctttagaatcgtttgcaatacaaaggatgccattgc |
118 |
Q |
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| T |
2067534 |
ggcttttcaaaaagtggcaactccttgattgttctaatagaagggttacacaatataactaagcctgtataatggttggcaatacaaatgatgccattgc |
2067633 |
T |
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| Q |
119 |
aagagccaa |
127 |
Q |
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| T |
2067634 |
aagagccaa |
2067642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 3745593 - 3745484
Alignment:
| Q |
19 |
tggcttttttaaaaggggcaactccctgaattttctaatggtaggtttc-acaatataaataagtctttagaatcgtttgcaatacaaaggatgccattg |
117 |
Q |
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|||||||| ||||||||||||||| ||||||||||||| | || ||| ||| ||||| ||| ||||| |||| | |||||||||||||||||| ||| |
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| T |
3745593 |
tggcttttgaaaaaggggcaactccttgaattttctaatagaggggttccacagtataaccaagcctttataatcatctgcaatacaaaggatgccgttg |
3745494 |
T |
|
| Q |
118 |
caagagccaa |
127 |
Q |
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|||||||||| |
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| T |
3745493 |
caagagccaa |
3745484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 12132661 - 12132564
Alignment:
| Q |
31 |
aaggggcaactccctgaattttctaatggtaggtttca-caatataaataagtctttagaat---cgtttgcaatacaaaggatgccattgcaagagc |
124 |
Q |
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| T |
12132661 |
aaggggcaactccttgaattttctaatggaagggttcaacaatataatcaagcctttgtcattggcgtctgcaatacaaaggatgccattgcaagagc |
12132564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 1078662 - 1078762
Alignment:
| Q |
31 |
aaggggcaactccctgaattttctaatggtaggtttca-caatataaataagtctttagaatcgtt---tgcaatacaaaggatgccattgcaagagcca |
126 |
Q |
| |
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||||||||||||| ||||||||||||||| ||| |||| |||||||| |||| |||| || || ||||||||||||||||||||||||||||||| |
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| T |
1078662 |
aaggggcaactccttgaattttctaatggaagggttcaacaatataactaagcctttgtcattgtcatctgcaatacaaaggatgccattgcaagagcca |
1078761 |
T |
|
| Q |
127 |
a |
127 |
Q |
| |
|
| |
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|
| T |
1078762 |
a |
1078762 |
T |
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