View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4456-Insertion-2 (Length: 950)
Name: NF4456-Insertion-2
Description: NF4456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4456-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 46 - 411
Target Start/End: Original strand, 12780710 - 12781075
Alignment:
| Q |
46 |
aataataaaatggtgtctcttagtcaatcttaattattgttaggaaattgatttcttagcagcatagcgtaataataacaaaaatgtaatattcacctca |
145 |
Q |
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| T |
12780710 |
aataataaaatggtgtctcttagtcaatcttaattattgttaggaaattgatttcttagcagcatagcgtaataataacaaaaatgtaatattcaacaca |
12780809 |
T |
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| Q |
146 |
aacattgagataagaatttcttttaacattgaaatgtgatgaccatacagcgtgaatggaatttcctttttattgtgaattcaacttgaatgaaaattac |
245 |
Q |
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| T |
12780810 |
aacattgagataagaatttcttttaacattgaaatatgatgaccatacagcgtgaatggaatttcttttttattgtgaattcaacttgaatggaaattac |
12780909 |
T |
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| Q |
246 |
gtgaacaaatcattcatggaacatatatataaatcaaagttaggtgataggtcgttcttttttctaaattgggtattgttgttgaggtaattaaaaggca |
345 |
Q |
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| T |
12780910 |
gtgaacaaatcatgcatggaacatatatataaatcaaagttaggtgataggtcgttcttttttctaaattgggtattgttgttgaggtaattaaaaggca |
12781009 |
T |
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| Q |
346 |
ggtagaatatggccaatgaattgtatatacnnnnnnngggtagaaacagacaggtcataaagtact |
411 |
Q |
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| T |
12781010 |
ggtagaatatggccaatgaattgtatatactttttttgggtagaaacagacaggtcataaagtact |
12781075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 501 - 889
Target Start/End: Original strand, 12781840 - 12782228
Alignment:
| Q |
501 |
taaaaaatgataggcatatactcttttttattgggtaaaattgataccttcccacccaacttatgtgagaattttnnnnnnnttcaaatggaatatatta |
600 |
Q |
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| T |
12781840 |
taaaatatgatagcaatatactcttttttattggttaaaattgatacattcccaccaaccttatgtgagattttaaaaaaaattaaaatggaatatatta |
12781939 |
T |
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| Q |
601 |
aacttggaaagtgtccaaactagcacaagatgcccttgaaaatgacactaaagtatccaagtataaccacctggtagtccaagagaaaa---aaccaaag |
697 |
Q |
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| T |
12781940 |
aacttgaaaagtgtcgaaactagcacaaggtgcgcttgaaaatgacactaaagtatcaaagtataacaacatgttagtcaaacagaaaacaaaaagaaaa |
12782039 |
T |
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| Q |
698 |
aaactcacaactatgtaatccaacccatacaaacaaatgtgttatcccacaattgttgaacatcaaaagacaaaatcgaaattttcgctttcaactaccg |
797 |
Q |
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| T |
12782040 |
aaactcacaactatgtaaccaaacccatacaaacaaatgtgttatcccacaattgttgaacatcaaaagacaaaaccgaaattttcgctttcaactacgg |
12782139 |
T |
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| Q |
798 |
aaaagttaataagctttaactttgtcgacaagccgctgtggtgaaacctatataaagtagaaaatttgagagttaatctccttcccaataat |
889 |
Q |
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| T |
12782140 |
aaaagttaat-agcttt-actttgtcgacaagccgctgtgttgaaacctat-taagttagaaaatttgagagtttatctccttccaaataat |
12782228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 12780637 - 12780691
Alignment:
| Q |
10 |
tgcttcatttattcacgcttcattttgtgataaataaataataaaatggtgtctc |
64 |
Q |
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| T |
12780637 |
tgcttcatttattcacgcttcattttgtgataaataaataataaaatggtgtctc |
12780691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 455
Target Start/End: Original strand, 12781783 - 12781816
Alignment:
| Q |
422 |
atacacaaaaaactgtatttttaaaataaatcag |
455 |
Q |
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| T |
12781783 |
atacacaaaaaactgtatttttaaaataaatcag |
12781816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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