View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4456-Insertion-3 (Length: 851)
Name: NF4456-Insertion-3
Description: NF4456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4456-Insertion-3 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 812; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 8 - 851
Target Start/End: Complemental strand, 118459 - 117616
Alignment:
| Q |
8 |
gaaaggtccaactacctctcctaagacaacctcctcctgtgcttaaacatctactctttgatcaagaatccgaagatagtaaaaattttcaacaacacac |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
118459 |
gaaaggtccaactacctctcctaagacaacctcctcctgtgcttaaacatctactctttgatcaagaatccgaagatagtaaaaaatttcaacaacacac |
118360 |
T |
|
| Q |
108 |
aagaatgtataattcaatgtttgcgtttagttctccaggaatgaaatttgatgataaggttgcgaaaggtagaggtccaccaactatgaggatacaagga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
118359 |
aagaatgtataattcaatgtttgcgtttagttctccaggaatgaaatttgatgataaggttgcaaaaggtagaggtccaccaactatgaggatacaagga |
118260 |
T |
|
| Q |
208 |
cagacatgtcatagaattggtagcatgttaccaattgaaggagaacaaccaaagtatgcccaactttacatatatgacactgagaatgagatacaaaaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
118259 |
cagacatgtcatagaattggtagcatgttaccaattgaaggagaacaaccaaagtatgcccaactttacatatatgacactgagaatgagatacaaaaca |
118160 |
T |
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| Q |
308 |
gaattagaggattcgggtacatatttttcaaaccttacgtcaattaactctttacataatcatttcatctataatcatattaattataacttatactgtt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
118159 |
gaattagaggattcgggtacatatttttcaaaccttacgtcaattaactctttacataatcatttcatctataatcatattaattataatttatactgtt |
118060 |
T |
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| Q |
408 |
ggacaggaacaccaaaaatatttctcaagacattgttgtacaattgtgcaaaatgttggatgaatttaatgttcatgcaaagtcattcaggatggcacgt |
507 |
Q |
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| T |
118059 |
ggacaagaacaccaaaaatatttctcaagacattgttgtacaattgtgcaaaatgctagatgaatttaatgttcatgcaaagtcattcaggatggcacgt |
117960 |
T |
|
| Q |
508 |
gatattttaaaaggaggacatattcatgatttgaaaatcaaacttatatcagaaaggaaatctgatggaaggatttacaatgaaccgacagtatcagaag |
607 |
Q |
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| T |
117959 |
gatattttaaaaggaggacacattcatgatttgaaaatcaaacttatatcagaaaggaaatctgatggaaggatttacaatgaaccgacagtatcagaag |
117860 |
T |
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| Q |
608 |
ttgctgctttcatagtaggtgatgttgatgcggccgataaaagagatatcattctgcaccaaactaatggtcaactccagagaattgatgagttccacgc |
707 |
Q |
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| T |
117859 |
ttgctgctttcatagtaggtgatgttgatgcggccgataaaagagatatcattctgcaccaaactaatggtcaactccagagaattgatgagttccacgc |
117760 |
T |
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| Q |
708 |
tgcttatttgagttaccaatatccactaatattcccctatggtgaagatggttacagagatggtatattgcataaatacagagctgaggtgaaagtcacc |
807 |
Q |
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| T |
117759 |
tgcttatttgaggtaccaatatccactaatattcccctatggtgaagatggttacagagatggtatattgcataaatacagagctgaggtgaaagtcacc |
117660 |
T |
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| Q |
808 |
aagaaaaatcgtctcactataaaagaatggttctcattcaggat |
851 |
Q |
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| T |
117659 |
aagaaaaatcgtctcactataaaagaatggttctcattcaggat |
117616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 410 - 846
Target Start/End: Complemental strand, 22071977 - 22071539
Alignment:
| Q |
410 |
acaggaacaccaaaaatatttctcaagacattgttgtacaattgtgcaaaatgttggatgaatttaatgttcatgcaaagtcattcaggatggcacgtga |
509 |
Q |
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||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
22071977 |
acaggaataccaaaaatatatctgaagacattgttgtacgattgtgcaaaatgttggatgagcataatgttcatgcaaagtctttcaggatggcacgtga |
22071878 |
T |
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| Q |
510 |
tattttaaaaggaggacatattcatgatttgaaaatcaaacttatatcagaaaggaaatctgatggaaggatttacaatgaaccgacagtatcagaagtt |
609 |
Q |
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| T |
22071877 |
tatcttaaagggaggacacatgaatgatttgaaattaagacttatatcggaaagtaaatctgatgataggatttacaatgaacctacggtctccgaagtt |
22071778 |
T |
|
| Q |
610 |
gctgctttcatagtaggtgatgttgatgcggccgataaaagagatatcattctgcaccaaactaatggtcaactccagagaattgatgagttccacgctg |
709 |
Q |
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| T |
22071777 |
gctgctttcatagtaggtgatgttgatactgccgataaaagagatatcattttgcatcaaactaatggtcagctccaaatgattgatgaatttcatgctg |
22071678 |
T |
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| Q |
710 |
cttatttgagttaccaatatccactaatattcccctatggtgaagatggttacagagatggtatattgcataaatacagagctgaggtgaaagtcac--c |
807 |
Q |
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| T |
22071677 |
catatttaagttaccagtatcccttgattttcccttatggtgaagatggttatagagatggtatattgcataagtatagagctgaagtgatagtcacaaa |
22071578 |
T |
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| Q |
808 |
aagaaaaatcgtctcactataaaagaatggttctcattc |
846 |
Q |
| |
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|| ||||||||||||| ||||||||| ||||| |||||| |
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| T |
22071577 |
aaaaaaaatcgtctcattataaaagagtggttttcattc |
22071539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 22072410 - 22072085
Alignment:
| Q |
8 |
gaaaggtccaactacctctcctaagacaacctcctcctgtgcttaaacatctactctttgatcaagaatccgaagatagtaaaaattttcaacaacacac |
107 |
Q |
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|||| |||||||| ||||| ||||||||||||||| |||| ||| ||||||||||||||||||| |||| |||||| |||||||| || ||| |||| |
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| T |
22072410 |
gaaaagtccaacttcctcttctaagacaacctccttctgtacttcaacatctactctttgatcatcaatcagaagattccaaaaatttccagcaaaacac |
22072311 |
T |
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| Q |
108 |
aagaatgtataattcaatgtttgcgtttagttctccaggaatgaaatttgatgataaggttgcgaaaggtagaggtccaccaactatgaggatacaagga |
207 |
Q |
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| T |
22072310 |
aagaatgtataattcaatgttttcatttagttcaccaggcatgaaatttgatgataaggttactaaaggtagaggtccaccaaccatgaggatacaagga |
22072211 |
T |
|
| Q |
208 |
cagacatgtcatagaattggtagcatgttaccaattgaaggagaacaaccaaagtatgcccaactttacatatatgacactgagaatgagatacaaaaca |
307 |
Q |
| |
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||||||||||| |||||||||| |||| || || ||||||| ||| || ||||| |||||||||||||||||||| |||||||||||||| |||| |
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| T |
22072210 |
cagacatgtcaccgaattggtagtctgttgcctccagatggagaactacctaaatatgctcaactttacatatatgacacagagaatgagatacagaaca |
22072111 |
T |
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| Q |
308 |
gaattagaggattcgggtacatattt |
333 |
Q |
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| T |
22072110 |
aaattaaaggattcgagtatatattt |
22072085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 635
Target Start/End: Original strand, 26223955 - 26224021
Alignment:
| Q |
569 |
ctgatggaaggatttacaatgaaccgacagtatcagaagttgctgctttcatagtaggtgatgttga |
635 |
Q |
| |
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|||||||||||||||| ||| |||| || || || ||||| || ||||| ||||||||||||||||| |
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| T |
26223955 |
ctgatggaaggatttataatcaacctactgtctccgaagtagcagctttgatagtaggtgatgttga |
26224021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 635
Target Start/End: Original strand, 33543519 - 33543585
Alignment:
| Q |
569 |
ctgatggaaggatttacaatgaaccgacagtatcagaagttgctgctttcatagtaggtgatgttga |
635 |
Q |
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|||||||||||||||| ||| |||| || || || ||||| || ||||| ||||||||||||||||| |
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| T |
33543519 |
ctgatggaaggatttataatcaacctactgtctctgaagtagcagctttgatagtaggtgatgttga |
33543585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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