View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4456-Insertion-4 (Length: 799)

Name: NF4456-Insertion-4
Description: NF4456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4456-Insertion-4
NF4456-Insertion-4
[»] chr6 (14 HSPs)
chr6 (189-799)||(32429940-32430560)
chr6 (3-158)||(32429718-32429872)
chr6 (464-563)||(20469081-20469180)
chr6 (459-563)||(2198044-2198148)
chr6 (468-563)||(32715865-32715960)
chr6 (495-564)||(7344397-7344466)
chr6 (459-563)||(17697967-17698071)
chr6 (464-559)||(21970573-21970668)
chr6 (472-558)||(6943815-6943901)
chr6 (468-561)||(22734966-22735059)
chr6 (467-559)||(31644458-31644550)
chr6 (465-560)||(15383249-15383344)
chr6 (495-564)||(6949468-6949537)
chr6 (465-563)||(10887856-10887953)
[»] chr3 (29 HSPs)
chr3 (466-560)||(37146298-37146392)
chr3 (468-563)||(52457997-52458092)
chr3 (479-563)||(881986-882070)
chr3 (468-560)||(19608556-19608648)
chr3 (459-559)||(52178993-52179093)
chr3 (468-563)||(41574785-41574880)
chr3 (457-560)||(46868525-46868628)
chr3 (464-551)||(52082088-52082175)
chr3 (472-559)||(52162649-52162736)
chr3 (459-561)||(542628-542730)
chr3 (480-561)||(32717916-32717997)
chr3 (475-559)||(7946607-7946691)
chr3 (483-559)||(8966197-8966273)
chr3 (467-559)||(19914300-19914392)
chr3 (451-563)||(32621601-32621713)
chr3 (465-560)||(3082224-3082319)
chr3 (464-559)||(23796043-23796138)
chr3 (476-551)||(41316617-41316692)
chr3 (513-560)||(51039920-51039967)
chr3 (753-792)||(52497755-52497794)
chr3 (465-563)||(788519-788617)
chr3 (469-563)||(45727051-45727145)
chr3 (468-561)||(47243948-47244042)
chr3 (514-560)||(47244346-47244392)
chr3 (459-561)||(47599989-47600091)
chr3 (468-561)||(13451469-13451562)
chr3 (479-564)||(35320421-35320506)
chr3 (471-560)||(43744277-43744366)
chr3 (468-561)||(54831087-54831180)
[»] chr2 (21 HSPs)
chr2 (464-560)||(12547632-12547728)
chr2 (479-559)||(6588296-6588376)
chr2 (450-563)||(5155725-5155838)
chr2 (468-560)||(22595001-22595093)
chr2 (467-559)||(38617776-38617867)
chr2 (479-560)||(6438232-6438313)
chr2 (468-560)||(29943820-29943912)
chr2 (465-563)||(25712765-25712862)
chr2 (451-563)||(13507286-13507399)
chr2 (468-561)||(36054209-36054302)
chr2 (479-559)||(1860193-1860273)
chr2 (467-559)||(4114710-4114802)
chr2 (463-559)||(10456091-10456187)
chr2 (483-559)||(17821788-17821864)
chr2 (476-560)||(19203834-19203918)
chr2 (478-562)||(12955314-12955404)
chr2 (465-563)||(34438233-34438331)
chr2 (513-563)||(44544308-44544358)
chr2 (468-561)||(2640181-2640274)
chr2 (479-560)||(33494199-33494280)
chr2 (479-564)||(36049525-36049610)
[»] chr7 (26 HSPs)
chr7 (464-563)||(11486257-11486356)
chr7 (468-563)||(37118383-37118478)
chr7 (468-563)||(24203129-24203224)
chr7 (463-560)||(42975160-42975257)
chr7 (467-563)||(8770418-8770514)
chr7 (473-560)||(31482637-31482724)
chr7 (464-563)||(45857520-45857619)
chr7 (464-558)||(44963868-44963962)
chr7 (464-560)||(30936139-30936235)
chr7 (468-560)||(39925844-39925936)
chr7 (495-559)||(40379047-40379111)
chr7 (465-561)||(43750339-43750435)
chr7 (460-559)||(523800-523899)
chr7 (472-559)||(15584594-15584681)
chr7 (472-558)||(29923591-29923677)
chr7 (525-563)||(43069339-43069377)
chr7 (468-562)||(45704550-45704644)
chr7 (495-564)||(1343282-1343351)
chr7 (495-563)||(16200458-16200527)
chr7 (483-559)||(15591651-15591727)
chr7 (467-559)||(16086994-16087086)
chr7 (459-563)||(30819712-30819815)
chr7 (467-559)||(43631103-43631195)
chr7 (468-563)||(24189100-24189195)
chr7 (513-563)||(20883886-20883936)
chr7 (465-558)||(41809466-41809559)
[»] chr5 (27 HSPs)
chr5 (471-563)||(21946042-21946133)
chr5 (457-560)||(28632049-28632152)
chr5 (464-560)||(13091178-13091274)
chr5 (464-560)||(25395067-25395163)
chr5 (479-563)||(29744164-29744248)
chr5 (468-563)||(14575522-14575617)
chr5 (480-564)||(13795333-13795417)
chr5 (464-560)||(14967496-14967592)
chr5 (469-560)||(28638206-28638296)
chr5 (494-560)||(4839521-4839587)
chr5 (479-564)||(34859495-34859580)
chr5 (471-563)||(972411-972503)
chr5 (464-560)||(9589473-9589569)
chr5 (468-560)||(15264308-15264400)
chr5 (480-560)||(27117980-27118060)
chr5 (479-563)||(32624438-32624522)
chr5 (479-563)||(41802369-41802453)
chr5 (464-559)||(13645565-13645660)
chr5 (453-560)||(23258563-23258670)
chr5 (473-564)||(35817403-35817494)
chr5 (480-559)||(37431411-37431490)
chr5 (468-563)||(43167204-43167299)
chr5 (479-560)||(31076810-31076892)
chr5 (471-561)||(32092345-32092435)
chr5 (471-564)||(33654881-33654972)
chr5 (468-561)||(14054677-14054770)
chr5 (467-560)||(35682359-35682452)
[»] chr4 (36 HSPs)
chr4 (464-560)||(36091323-36091419)
chr4 (468-561)||(52759836-52759929)
chr4 (464-560)||(9858514-9858610)
chr4 (463-559)||(42881084-42881180)
chr4 (468-560)||(55060301-55060393)
chr4 (468-560)||(56272843-56272935)
chr4 (459-561)||(30839283-30839385)
chr4 (468-561)||(30951173-30951266)
chr4 (492-560)||(39915703-39915771)
chr4 (480-560)||(47302661-47302741)
chr4 (468-560)||(48253990-48254082)
chr4 (468-563)||(4540606-4540701)
chr4 (468-563)||(16917486-16917581)
chr4 (464-563)||(21424404-21424502)
chr4 (468-563)||(22413822-22413917)
chr4 (468-563)||(39512918-39513013)
chr4 (468-562)||(46564762-46564856)
chr4 (459-561)||(52104448-52104550)
chr4 (483-559)||(11038110-11038186)
chr4 (464-560)||(31908707-31908803)
chr4 (468-560)||(34936604-34936696)
chr4 (467-559)||(47920541-47920633)
chr4 (495-563)||(52940743-52940811)
chr4 (464-559)||(43959039-43959134)
chr4 (468-551)||(48058750-48058833)
chr4 (465-563)||(9579711-9579808)
chr4 (465-563)||(9585406-9585503)
chr4 (471-561)||(20927705-20927795)
chr4 (459-561)||(23390764-23390866)
chr4 (482-548)||(24885717-24885783)
chr4 (478-560)||(48018394-48018476)
chr4 (529-563)||(56361426-56361460)
chr4 (475-560)||(10332900-10332985)
chr4 (468-561)||(25814430-25814523)
chr4 (468-561)||(40319264-40319357)
chr4 (480-561)||(53695447-53695528)
[»] chr1 (35 HSPs)
chr1 (464-560)||(27353111-27353207)
chr1 (471-558)||(29451067-29451154)
chr1 (465-563)||(51977904-51978002)
chr1 (472-553)||(51229643-51229724)
chr1 (479-563)||(20280483-20280567)
chr1 (464-560)||(23304673-23304768)
chr1 (459-563)||(36672191-36672295)
chr1 (479-563)||(41550208-41550292)
chr1 (464-560)||(50239322-50239418)
chr1 (464-559)||(7122221-7122316)
chr1 (468-563)||(11444320-11444415)
chr1 (465-560)||(35910428-35910523)
chr1 (468-563)||(39627877-39627972)
chr1 (468-561)||(33485977-33486071)
chr1 (473-559)||(48796295-48796381)
chr1 (468-561)||(22667314-22667407)
chr1 (479-560)||(22821513-22821594)
chr1 (480-560)||(632709-632789)
chr1 (465-561)||(28791413-28791509)
chr1 (472-532)||(29852242-29852302)
chr1 (467-559)||(30547876-30547968)
chr1 (479-563)||(33771707-33771791)
chr1 (467-559)||(34100761-34100853)
chr1 (483-559)||(46707408-46707484)
chr1 (513-561)||(48354804-48354852)
chr1 (479-563)||(49739392-49739476)
chr1 (468-563)||(12979844-12979939)
chr1 (468-563)||(26921725-26921820)
chr1 (468-563)||(42647658-42647753)
chr1 (465-563)||(26423888-26423985)
chr1 (465-563)||(48616495-48616593)
chr1 (513-563)||(51401877-51401927)
chr1 (513-558)||(32627592-32627637)
chr1 (479-560)||(33234115-33234196)
chr1 (467-560)||(52261078-52261171)
[»] chr8 (24 HSPs)
chr8 (464-560)||(17642338-17642434)
chr8 (468-563)||(31940676-31940771)
chr8 (465-563)||(39347178-39347276)
chr8 (479-556)||(32238205-32238281)
chr8 (464-557)||(43921398-43921491)
chr8 (464-560)||(2273274-2273370)
chr8 (459-563)||(19725308-19725412)
chr8 (465-560)||(529535-529630)
chr8 (468-563)||(3642936-3643031)
chr8 (468-563)||(12980275-12980370)
chr8 (468-563)||(36496194-36496289)
chr8 (464-559)||(43049801-43049896)
chr8 (479-563)||(3053061-3053145)
chr8 (467-559)||(6631379-6631471)
chr8 (495-563)||(27970274-27970342)
chr8 (467-559)||(31158820-31158912)
chr8 (468-560)||(43460615-43460707)
chr8 (468-563)||(9008087-9008181)
chr8 (468-563)||(9178769-9178864)
chr8 (468-563)||(33628624-33628719)
chr8 (464-563)||(40547736-40547834)
chr8 (481-563)||(29039676-29039758)
chr8 (468-561)||(16871614-16871707)
chr8 (494-563)||(43841919-43841988)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 189 - 799
Target Start/End: Original strand, 32429940 - 32430560
Alignment:
Q  189 tagggttgacaaattaaatatcatattttatccgatttgaggattagtcctatactggatctaaactatgtgtgaatatttgagatgcttagtacgctta 288  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  32429940 tagggttg-caaattaaatatcatattttatccgatttgaggattagtcctatactagatctaaactgtttgtgaatatttgagatgcttagtacgctta 32430038  T
Q  289 gtaagatctacaaaggtagttagagttatattttgtcgttgtgtgaatcaaatattcttttcgtgtaacttgctaaaaataa--------caactctctt 380  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||        ||||||| ||    
T  32430039 gtaagatctacaaaggtagttagagttatattttgtcattgtgtgaatcaaatatttttttcgtgtaacttgctaaaaataaatctaacacaactctttt 32430138  T
Q  381 ctttcatccgggcttgatatcagttatgcatagcaagcctatgcctagctaataaaaatgtattgatgt----atgtattgatacatttacttcataaat 476  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||    |||||||||||||||||||||||||||    
T  32430139 cttttatccgggcttgatatcggttatgcatagcaaacctatgcctagataataaaaatgtatcgatgtatgtatgtattgatacatttacttcataaat 32430238  T
Q  477 caataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacattgttctttgtnnn 576  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||       
T  32430239 caataaattaacaattatttttatgaaataataagttatttgtcgagttttgtattttagaaaatatcatttcataagaaaaaacattgttctttgt-aa 32430337  T
Q  577 nnnnnnnnnnnnttagtatgattcataaaaattgtcactatcannnnnnngggtaataaaaataacattgtttcttgt----nnnnnnnnnntaacattg 672  Q
                |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||              ||||||||    
T  32430338 aataaaataaaattagtatgattcataaaaattgtcactatcatttttttgggtaataaaaataacattgtttcttgtaaaaaaataaaaaataacattg 32430437  T
Q  673 tttcactatcannnnnnnnnnngggtgcagtttcacttttatttttattatatcgttattgctgtctatccttgaacatgaaccacaatttcttcacaca 772  Q
    ||||||||| |           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32430438 tttcactatta----tttttttgggtgcagtttcacttttatttttattatattgttattgctgtctatccttgaacatgaaccacaatttcttcacaca 32430533  T
Q  773 atttttctgtttatatgtttggcacca 799  Q
    |||||||||||||||||||||||||||    
T  32430534 atttttctgtttatatgtttggcacca 32430560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 32429718 - 32429872
Alignment:
Q  3 caacaataaagagttttctttttctctnnnnnnnngcttgaatagaatttgttagacaaatcgttcattgccttaaaacaaatggtgaaatactactttt 102  Q
    |||||||||||| ||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32429718 caacaataaagacttttctttttctctaaaaaaa-gcttgaataaaatttgttagacaaatcgttcattgccttaaaacaaatggtgaaatactactttt 32429816  T
Q  103 cttcatctttgaaggaggaaaccctaaaatgacgagttaacgtagacttaaaaaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32429817 cttcatctttgaaggaggaaaccctaaaatgacgagttaacgtagacttaaaaaat 32429872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 563
Target Start/End: Original strand, 20469081 - 20469180
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||| ||||| |||||||||| || |||||||| ||||||  || ||||||| ||  |||||||||||| ||||||||||||||||||||||||||    
T  20469081 ttacttcaaaaatctataaattaactatcatttttatgaaataaagagctatttattgatatttgtattttagaaaatatcatttcataagaaaaaacat 20469180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 459 - 563
Target Start/End: Complemental strand, 2198148 - 2198044
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    ||||| || ||||||||||||||| ||||  || ||||||||  || ||  || |||||||||| |||| |||||||| |||||| ||||||||||||||    
T  2198148 tacatctatttcataaatcaataagttaaagatcatttttatgtaacaaagagctatttatcgacttttatattttagaaaatattatttcataagaaaa 2198049  T
Q  559 aacat 563  Q
    |||||    
T  2198048 aacat 2198044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 32715960 - 32715865
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||||| |||||||| ||||||||  |||||  || | | |||||| |||| |||||||  ||||||||||||||||||||||||||    
T  32715960 ttcataattcaataagttaacaatcatttttatgtaataaagagatgtctatcgacttttatattttaaaaaatatcatttcataagaaaaaacat 32715865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 495 - 564
Target Start/End: Original strand, 7344397 - 7344466
Alignment:
Q  495 ttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacatt 564  Q
    |||||| ||||||  |||||||||||||  ||| |||||||| ||||||||||| |||||||||||||||    
T  7344397 ttttatgaaataaagagttatttatcgatatttatattttagaaaatatcattttataagaaaaaacatt 7344466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 563
Target Start/End: Complemental strand, 17698071 - 17697967
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaata-tcatttcataagaaa 557  Q
    |||||||| || |||||||||||||||||| | |||||||||| |||||  || |||||||||| |||| |||||||  ||||| | |||| ||||||||    
T  17698071 tacatttattttataaatcaataaattaacga-tatttttatataataaagagatatttatcgacttttatattttaaaaaatatttatttgataagaaa 17697973  T
Q  558 aaacat 563  Q
    ||||||    
T  17697972 aaacat 17697967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 464 - 559
Target Start/End: Complemental strand, 21970668 - 21970573
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||| |||||| |||||||||| || | |||||| ||||||  |||||||| |||   ||| |||||||  ||||||||||||||||||||||    
T  21970668 ttacttcctaaatctataaattaacgatcaattttatgaaataaatagttatttgtcggcatttatattttacaaaatatcatttcataagaaaaa 21970573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 6943901 - 6943815
Alignment:
Q  472 taaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    |||||||||||| ||||| |||||||||| |||||| || ||| ||  ||| |||| | |||||| |||||||||||||||| ||||    
T  6943901 taaatcaataaaataacagttatttttatgaaataaaaatttacttgccgatttttatgttttagaaaatatcatttcataaaaaaa 6943815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 22735059 - 22734966
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| | || ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  22735059 ttcataaatcaataagttatcgatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaac 22734966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 559
Target Start/End: Original strand, 31644458 - 31644550
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||| ||||| ||||||| | |||||| ||||||  |||||||| |||   ||| |||||||| |||||| |||||| ||||||||    
T  31644458 cttcataaatctataaactaacaatcaattttatgaaataaatagttatttgtcggcatttatattttagaaaatatgatttcagaagaaaaa 31644550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 560
Target Start/End: Original strand, 15383249 - 15383344
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||| |||||  ||||||||| |||||||||||  ||||| ||| ||||| | ||  ||| |||||||| |||| ||||||||||| ||||||    
T  15383249 tacttcaaaaatctttaaattaactattatttttatggaataaaaagctatttgttgatatttatattttagaaaatgtcatttcataaaaaaaaa 15383344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 495 - 564
Target Start/End: Complemental strand, 6949537 - 6949468
Alignment:
Q  495 ttttataaaataataagttatttatcgagttttgtattttaggaaa-tatcatttcataagaaaaaacatt 564  Q
    |||||| |||||| |||||||||||| | |||| |||||||| ||| ||| ||||||||||||||||||||    
T  6949537 ttttatgaaataa-aagttatttatccacttttatattttagaaaaatattatttcataagaaaaaacatt 6949468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 10887856 - 10887953
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||  |||| ||||| |||||||| |||||||||  ||||||||||| |  ||| |||||||  |||||| |||| ||||||||||||||    
T  10887856 tacttcaaaaatttataatttaacgattatttt-ataaaataaagagttatttatcaatatttatattttaaaaaatattattttataagaaaaaacat 10887953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 466 - 560
Target Start/End: Original strand, 37146298 - 37146392
Alignment:
Q  466 acttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||| ||| |||||||||||||||| |||||||| |||||| |||||||||||||| |||| ||||||  |||||||||||||| |||||||||    
T  37146298 acttcttaagtcaataaattaacaataatttttattaaataaaaagttatttatcgacttttatattttgagaaatatcatttcaaaagaaaaaa 37146392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 52457997 - 52458092
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||||| |||||||| ||||||||  |||||  || | |||||||| |||| |||||||  ||||||||||||||||||||||||||    
T  52457997 ttcataattcaataagttaacaatcatttttatgtaataaagagatgtttatcgacttttatattttaaaaaatatcatttcataagaaaaaacat 52458092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 563
Target Start/End: Complemental strand, 882070 - 881986
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| || ||||||||||||||| ||||||||| || |  ||| |||||||| |||  |||| ||||||||||||||||    
T  882070 ataaattaacgatcatttttataaaataaaaagttatttgtcaatatttatattttagaaaacgtcatatcataagaaaaaacat 881986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 560
Target Start/End: Complemental strand, 19608648 - 19608556
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||||||||| ||||| || ||||||||  || ||  || ||||| |||| |||| |||||||| |||||| ||||||||||||||||    
T  19608648 ttcataaatcaataagttaacgatcatttttatgtaaaaaagagctatttgtcgacttttatattttagaaaatattatttcataagaaaaaa 19608556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 559
Target Start/End: Original strand, 52178993 - 52179093
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    |||||||  ||||||||||||||| ||||| || ||||||||  || ||  || |||||||||| |||| |||||||| |||||| ||||||||| ||||    
T  52178993 tacatttgtttcataaatcaataagttaacgatcatttttatgtaaaaaagagctatttatcgacttttatattttagaaaatattatttcataaaaaaa 52179092  T
Q  559 a 559  Q
    |    
T  52179093 a 52179093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 41574785 - 41574880
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||| ||||  |||||||||||  |||||  || ||||||| || |||| |||||||| |||||| ||||| ||| |||||||||    
T  41574785 ttcataaatcaataagttaatgattatttttatgtaataaagagatatttattgacttttatattttagaaaatattatttcgtaacaaaaaacat 41574880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 457 - 560
Target Start/End: Original strand, 46868525 - 46868628
Alignment:
Q  457 gatacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaa 556  Q
    ||||||||| |||  ||||||||||||||||  ||||||||||| ||||||  || ||||| |||| ||||||||| ||  |||| ||||||||| || |    
T  46868525 gatacatttgctttctaaatcaataaattaatgattatttttatgaaataaagagctatttgtcgaattttgtattgtaaaaaatgtcatttcattagga 46868624  T
Q  557 aaaa 560  Q
    ||||    
T  46868625 aaaa 46868628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 464 - 551
Target Start/End: Original strand, 52082088 - 52082175
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcat 551  Q
    |||||||| ||||  |||||| ||| ||||||||||| |||||| ||||||||| | ||  ||| |||||||| ||||||||||||||    
T  52082088 ttacttcaaaaatttataaatgaactattatttttatgaaataaaaagttatttgttgatatttatattttagaaaatatcatttcat 52082175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 472 - 559
Target Start/End: Complemental strand, 52162736 - 52162649
Alignment:
Q  472 taaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||||| |||||||||| || | |||||||||| ||  ||||||||||||   ||| |||||||| |||||| |||||||||||||||    
T  52162736 taaatctataaattaacgatcaattttataaaacaaatagttatttatcggcatttatattttagaaaatataatttcataagaaaaa 52162649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 561
Target Start/End: Complemental strand, 542730 - 542628
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    |||| ||| ||||||||||||||| ||| | || ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| |||||||||    
T  542730 tacacttatttcataaatcaataagttatcgatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaa 542631  T
Q  559 aac 561  Q
    |||    
T  542630 aac 542628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 561
Target Start/End: Complemental strand, 32717997 - 32717916
Alignment:
Q  480 taaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||| ||| ||||||||||| |||||| ||||||||| | ||  ||| |||||||| |||| ||||| |||||||||||||    
T  32717997 taaatgaactattatttttatgaaataaaaagttatttgttgatatttatattttagaaaatgtcattacataagaaaaaac 32717916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 475 - 559
Target Start/End: Complemental strand, 7946691 - 7946607
Alignment:
Q  475 atcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||||||||||||   |||||||||||||||||  | |||||| | || |||| | |||||| |||||||||||||||| |||||    
T  7946691 atcaataaattaatgtttatttttataaaataaagaattatttgtggacttttatgttttagaaaatatcatttcataataaaaa 7946607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 483 - 559
Target Start/End: Complemental strand, 8966273 - 8966197
Alignment:
Q  483 attaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||| | |||||| |||||| ||||||||| |||   ||||||| | || ||||||||||||||||||||||    
T  8966273 attaacaatcaattttatgaaataaaaagttatttgtcggcatttgtatctcagaaaatatcatttcataagaaaaa 8966197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 559
Target Start/End: Complemental strand, 19914392 - 19914300
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||| |||||||||| || | |||||| ||||||  |||||||| |||   ||| |||||||| |||||| |||||| ||||||||    
T  19914392 cttcataaatctataaattaacgatcaattttatgaaataaatagttatttgtcggcatttatattttagaaaatatgatttcagaagaaaaa 19914300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 563
Target Start/End: Complemental strand, 32621713 - 32621601
Alignment:
Q  451 tgtattgatacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttca 550  Q
    ||||||| ||||  || |||||||||||||||  |||  || |||||||| ||| ||  || ||||| |||| |||| |||||||  |||||| ||||||    
T  32621713 tgtattggtacacctatttcataaatcaataagataaagatcatttttatgaaacaaagagctatttgtcgacttttatattttaaaaaatattatttca 32621614  T
Q  551 taagaaaaaacat 563  Q
    |||||||||||||    
T  32621613 taagaaaaaacat 32621601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 560
Target Start/End: Original strand, 3082224 - 3082319
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||| |||||  ||||||||| |||||||||||  ||||| ||| ||||| | ||  ||| |||||||| |||| ||||||||||| ||||||    
T  3082224 tacttcaaaaatctttaaattaactattatttttatggaataaaaagctatttgttgatatttatattttagaaaatgtcatttcataaaaaaaaa 3082319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 559
Target Start/End: Complemental strand, 23796138 - 23796043
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||| |||||| |||||||||| || | |||||| ||||||  | |||||| |||   ||| |||||||| ||||||||| ||||||||||||    
T  23796138 ttacttcctaaatctataaattaacgatcaattttatgaaataaataattatttgtcggcatttatattttagaaaatatcatgtcataagaaaaa 23796043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 41316617 - 41316692
Alignment:
Q  476 tcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcat 551  Q
    ||||| ||||||| || |||||||| ||||||  ||||||| ||||| | || |||||||| ||||||||||||||    
T  41316617 tcaatgaattaacgataatttttatgaaataaagagttattcatcgactattatattttagaaaatatcatttcat 41316692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 560
Target Start/End: Original strand, 51039920 - 51039967
Alignment:
Q  513 tatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||| |||| |||||||  |||||||||||||||||||||||    
T  51039920 tatttatcgatttttatattttaataaatatcatttcataagaaaaaa 51039967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 792
Target Start/End: Original strand, 52497755 - 52497794
Alignment:
Q  753 aaccacaatttcttcacacaatttttctgtttatatgttt 792  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  52497755 aaccacaatttcttcatacaatttctctgtttatatgttt 52497794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 788519 - 788617
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| |||||  ||||||||| |||||||||||  |||||  || ||||| | ||  ||| ||||||| ||||| | |||||||||||||||||||    
T  788519 tacttcaaaaatctttaaattaactattatttttatggaataaagagctatttgttgatatttatattttatgaaatgttatttcataagaaaaaacat 788617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 469 - 563
Target Start/End: Complemental strand, 45727145 - 45727051
Alignment:
Q  469 tcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||| ||||||| |||||||| ||||||||  |||||  |  ||| |||||| |||| ||||| |  |||||| |||||||||||||||||||    
T  45727145 tcataattcaataagttaacaatcatttttatgtaataaagaaatatctatcgacttttatatttaaaaaaatattatttcataagaaaaaacat 45727051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 47244042 - 47243948
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgt-attttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| | || ||||||||  ||||| ||| |||||||| | |||| | ||||||| |||||| |||| ||||||||||||    
T  47244042 ttcataaatcaataagttatcgatcatttttatgtaataaaaagatatttatcaactttttttattttagaaaatattattttataagaaaaaac 47243948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 560
Target Start/End: Complemental strand, 47244392 - 47244346
Alignment:
Q  514 atttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||| |||| |||||||| |||||| ||||||||||||||||    
T  47244392 atttatcgacttttatattttagaaaatattatttcataagaaaaaa 47244346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 47599989 - 47600091
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    ||||| || ||||||||||||||| ||| | || ||||||||| |||||  || |||||||| | |||| ||||| |  |||||| |||| |||||||||    
T  47599989 tacatctatttcataaatcaataagttatcgatcatttttatataataaagagatatttatcaacttttatatttaaaaaaatattattttataagaaaa 47600088  T
Q  559 aac 561  Q
    |||    
T  47600089 aac 47600091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Original strand, 13451469 - 13451562
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| | || ||||||||  |||||  || |||||| | | |||| |||||||| |||||| |||| ||||||||||||    
T  13451469 ttcataaatcaataagttatcgatcatttttatgtaataaagagatatttaccaacttttttattttagaaaatattattttataagaaaaaac 13451562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 564
Target Start/End: Original strand, 35320421 - 35320506
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacatt 564  Q
    ||||||||||||| | ||| || |||||| ||| ||||| || |  ||| |||||||| ||| |||||||||||||||||| ||||    
T  35320421 ataaattaacaatcactttaatgaaataaaaaggtatttgtcaatatttatattttagaaaacatcatttcataagaaaaaccatt 35320506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 560
Target Start/End: Original strand, 43744277 - 43744366
Alignment:
Q  471 ataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||||| ||| | || ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| |||||||||||    
T  43744277 ataaatcaataagttatcgatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaa 43744366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 54831180 - 54831087
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| | || |||||| |  |||||  || |||||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  54831180 ttcataaatcaataagttatcgatcatttttctgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaac 54831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 12547728 - 12547632
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| ||||||||||| |||||| ||| ||||||| ||  ||| |||||||| |||||||||||||||||||||||    
T  12547728 ttacttcaaaaatttataaattaactattatttttatgaaataaaaagctatttattgatatttatattttagaaaatatcatttcataagaaaaaa 12547632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 479 - 559
Target Start/End: Original strand, 6588296 - 6588376
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||||||||||||||||||||| ||||||  | |||||| ||||||||| |||||||| |||| |||||||| ||||||||    
T  6588296 ataaattaacaattatttttatgaaataaagaattatttgtcgagttttatattttagaaaatgtcatttcagaagaaaaa 6588376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 450 - 563
Target Start/End: Original strand, 5155725 - 5155838
Alignment:
Q  450 atgtattgatacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttc 549  Q
    |||||| | |||||||| ||||||||||||||  ||||  |||||||||||  |||||  || ||||| | || |||| |||||||| |||||| |||||    
T  5155725 atgtatcggtacatttatttcataaatcaatacgttaatgattatttttatgtaataaagagatatttgttgacttttatattttagaaaatattatttc 5155824  T
Q  550 ataagaaaaaacat 563  Q
    ||||||||||||||    
T  5155825 ataagaaaaaacat 5155838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 468 - 560
Target Start/End: Complemental strand, 22595093 - 22595001
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||||||||| ||||| || ||||||||  || || ||| ||||| |||| |||| |||||||| |||||| ||||||||||||||||    
T  22595093 ttcataaatcaataagttaacgatcatttttatgtaaaaaaaagctatttgtcgacttttatattttagaaaatattatttcataagaaaaaa 22595001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 467 - 559
Target Start/End: Original strand, 38617776 - 38617867
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||| |||||| ||||||||||||||| |||||| ||||||| |||||||| |||   ||| | |||||| ||||||||||||||||||||||    
T  38617776 cttcgtaaatctataaattaacaattaattttatgaaataat-agttatttgtcgtcatttatgttttagaaaatatcatttcataagaaaaa 38617867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 479 - 560
Target Start/End: Original strand, 6438232 - 6438313
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||| || |||||||| |||||| ||| ||||| | ||  ||| |||||||| |||||||||||||||||||||||    
T  6438232 ataaattaactataatttttatgaaataaaaagctatttgttgatatttatattttagaaaatatcatttcataagaaaaaa 6438313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 560
Target Start/End: Complemental strand, 29943912 - 29943820
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||| ||||||| |||||||| ||||||||  |||||  || | | |||||| |||| |||||||  |||||||||||||||||||||||    
T  29943912 ttcataattcaataagttaacaatcatttttatgtaataaagagatgtctatcgacttttatattttaaaaaatatcatttcataagaaaaaa 29943820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 25712765 - 25712862
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||  |||| ||||| |||||||| |||||||||  ||||||||||| |  ||| |||||||| ||| ||||||| ||||||||||||||    
T  25712765 tacttcaaaaatttataatttaacgattatttt-ataaaataaagagttatttatcaatatttatattttagaaaacatcattttataagaaaaaacat 25712862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 563
Target Start/End: Original strand, 13507286 - 13507399
Alignment:
Q  451 tgtattgatacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatat-catttc 549  Q
    |||| |||||||  || ||||||||||||||| ||||  || ||||||||  |||||  || |||||||||| |||| |||||||| ||||||  | |||    
T  13507286 tgtactgatacacctatttcataaatcaataagttaatgatcatttttatgtaataaagagatatttatcgacttttatattttagaaaatatgtagttc 13507385  T
Q  550 ataagaaaaaacat 563  Q
    ||||||||||||||    
T  13507386 ataagaaaaaacat 13507399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 36054302 - 36054209
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| |||| ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| |||| |||||||    
T  36054302 ttcataaatcaataagttatcaatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataaaaaaaaac 36054209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 1860273 - 1860193
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||||| | ||| || |||||| ||| |||||||| |  ||| |||||||| ||| ||||||||||||||||||    
T  1860273 ataaattaacaatcactttaatgaaataaaaaggtatttatcaatatttatattttagaaaacatcatttcataagaaaaa 1860193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 559
Target Start/End: Original strand, 4114710 - 4114802
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||| ||||| |||| || | |||||| ||||||  ||||||||||||   ||| |||||||| |||||| |||||| ||||||||    
T  4114710 cttcataaatctataaactaacgatcaattttatgaaataaatagttatttatcggcatttatattttagaaaatataatttcagaagaaaaa 4114802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 463 - 559
Target Start/End: Original strand, 10456091 - 10456187
Alignment:
Q  463 tttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||||||| |||||| |||||||||| || | |||||| ||||||  ||||||||||||   ||| |||||||| ||||||  | ||||||||||||    
T  10456091 tttacttcctaaatctataaattaactatcaattttatgaaataaatagttatttatcggcatttatattttagaaaatatattctcataagaaaaa 10456187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 483 - 559
Target Start/End: Complemental strand, 17821864 - 17821788
Alignment:
Q  483 attaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||| | |||||| |||||| ||||||||| |||   ||||||| | || ||||||||||||||||||||||    
T  17821864 attaacaatcaattttatgaaataaaaagttatttctcggcatttgtatctaagaaaatatcatttcataagaaaaa 17821788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 476 - 560
Target Start/End: Complemental strand, 19203918 - 19203834
Alignment:
Q  476 tcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||||||  || |||||||| ||||||  |||||||| |||| |||| ||||||| ||||||  |||||| |||||||||    
T  19203918 tcaataaattaatgataatttttatgaaataaatagttatttgtcgatttttatattttaagaaataatatttcacaagaaaaaa 19203834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 562
Target Start/End: Original strand, 12955314 - 12955404
Alignment:
Q  478 aataaattaacaattatttttataaaataataagtta------tttatcgagttttgtattttaggaaatatcatttcataagaaaaaaca 562  Q
    |||||||||||||||||||||||||| |||  |||||      ||| |  | ||||||||||| ||||| |||||||||||||||||||||    
T  12955314 aataaattaacaattatttttataaattaaagagttaggagtatttgtttacttttgtatttttggaaagatcatttcataagaaaaaaca 12955404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 34438233 - 34438331
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| |||||  ||||||||| |||||||||||  |||||  || ||||| | ||  ||| |||||||| |||| ||||||||||| |||||||||    
T  34438233 tacttcaaaaatctttaaattaactattatttttatggaataaagagctatttgttgatatttatattttagaaaatgtcatttcataaaaaaaaacat 34438331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 563
Target Start/End: Complemental strand, 44544358 - 44544308
Alignment:
Q  513 tatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| |||||||| |||| |||||| || ||||||||||||||||    
T  44544358 tatttatcgacttttgtatcttagaaaatattatctcataagaaaaaacat 44544308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 2640274 - 2640181
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| | || ||||||||  |||||  |  |||||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  2640274 ttcataaatcaataagttatcgatcatttttatgtaataaataaatatttatcaacttttatattttagaaaatattattttataagaaaaaac 2640181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 560
Target Start/End: Complemental strand, 33494280 - 33494199
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||| || | |||||| | ||||  |||||||| |||   ||| |||||||| |||||||||||||||||||||||    
T  33494280 ataaattaacgatcaattttatgatataaagagttatttgtcggcatttatattttagaaaatatcatttcataagaaaaaa 33494199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 564
Target Start/End: Original strand, 36049525 - 36049610
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacatt 564  Q
    ||||||||| ||| | ||| || |||||| ||| ||||| || |  ||| |||||||| |||||||||||||||||||||| ||||    
T  36049525 ataaattaataatcactttaatgaaataaaaaggtatttgtcaatatttatattttagaaaatatcatttcataagaaaaaccatt 36049610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 464 - 563
Target Start/End: Complemental strand, 11486356 - 11486257
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||| ||||| |||||||||| ||  ||||||| ||||||  || ||||||| ||  |||||||||||| ||||||||||||||||||||||||||    
T  11486356 ttacttcaaaaatctataaattaactatcttttttatgaaataaagagctatttattgatatttgtattttagaaaatatcatttcataagaaaaaacat 11486257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 37118383 - 37118478
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||||||||| || ||||||||  |||||  |  |||||||||| |||| |||||||| |||||| |||||||||||||||||||    
T  37118383 ttcataaatcaataaattaacgatcatttttatgtaataaagaaatatttatcgacttttatattttagaaaatattatttcataagaaaaaacat 37118478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 24203224 - 24203129
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||||||||  |||||||||||  |||||  || ||||| | || |||| |||||||| |||||| |||||||||||||||||||    
T  24203224 ttcataaatcaataaattaatgattatttttatgtaataaagagatatttgttgacttttatattttagaaaatattatttcataagaaaaaacat 24203129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 560
Target Start/End: Complemental strand, 42975257 - 42975160
Alignment:
Q  463 tttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||| ||||  |||||||||| ||||||||||| |||||| ||  ||||| | ||  ||| |||||||| |||||||||||||||||||||||    
T  42975257 tttacttcaaaaatttataaattaactattatttttatgaaataaaaaactatttgttgatatttatattttagaaaatatcatttcataagaaaaaa 42975160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 467 - 563
Target Start/End: Original strand, 8770418 - 8770514
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||| ||||| |||||||||| || |||||||| ||||||  |||| ||| | ||  |||||||||||| |||||||||| |||||||||||||||    
T  8770418 cttcaaaaatctataaattaactatcatttttatgaaataaagagttgtttgttgatatttgtattttagaaaatatcattacataagaaaaaacat 8770514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 473 - 560
Target Start/End: Complemental strand, 31482724 - 31482637
Alignment:
Q  473 aaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||| |||||||||| ||||||||||| ||||||  || |||||   ||  |||||||||||| |||||||||||||||||||||||    
T  31482724 aaatctataaattaactattatttttatgaaataaagagctatttcatgatatttgtattttagaaaatatcatttcataagaaaaaa 31482637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 464 - 563
Target Start/End: Original strand, 45857520 - 45857619
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||| ||||  |||||||||| |||| |||||| |||||| ||| ||||| | ||  ||| |||||||| ||||||||||| ||||||||||||||    
T  45857520 ttacttcaaaaatttataaattaactattacttttatgaaataaaaagctatttgttgatatttatattttagaaaatatcatttaataagaaaaaacat 45857619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 464 - 558
Target Start/End: Original strand, 44963868 - 44963962
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    |||||||| ||||  |||||||||| || |||||||| |||||| ||||||||| | ||  |||||||||||| ||||||||||| |||| ||||    
T  44963868 ttacttcaaaaatttataaattaactatcatttttatgaaataaaaagttatttgttgatatttgtattttagaaaatatcattttataaaaaaa 44963962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 560
Target Start/End: Original strand, 30936139 - 30936235
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| || | |||||| |||||| ||| ||||| | ||  ||| |||||||| |||||||||||||||||||||||    
T  30936139 ttacttcaaaaatttataaattaactatcaattttatgaaataaaaagctatttgttgatatttatattttagaaaatatcatttcataagaaaaaa 30936235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 560
Target Start/End: Original strand, 39925844 - 39925936
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||| ||||||| |||||||| ||||||||  |||||  || | | |||||| |||| |||||||  |||||||||||||||||||||||    
T  39925844 ttcataattcaataagttaacaatcatttttatgtaataaagagatgtctatcgacttttatattttaaaaaatatcatttcataagaaaaaa 39925936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 559
Target Start/End: Original strand, 40379047 - 40379111
Alignment:
Q  495 ttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||||| |||||||||||| |  ||| |||||||| ||||||||||| ||||||||||    
T  40379047 ttttataaaataaaaagttatttatcaatatttatattttagaaaatatcattttataagaaaaa 40379111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 561
Target Start/End: Complemental strand, 43750435 - 43750339
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||| |||||  ||||||||| |||||||||||  |||||  || ||||||| ||  ||| |||||||| |||| |||||||||||||||||||    
T  43750435 tacttcaaaaatctttaaattaactattatttttatggaataaagagctatttattgatatttatattttagaaaatgtcatttcataagaaaaaac 43750339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 460 - 559
Target Start/End: Complemental strand, 523899 - 523800
Alignment:
Q  460 acatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||| || |||||| |||||||||||||||| || |||| |  |||||||| |  | |||| |||||||| |||||| |||| ||||||||||    
T  523899 acatttacttcttacatcaatcaattaacaattattttcatgaaattaagagttatttgttaacttttatattttagaaaatattattttataagaaaaa 523800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 472 - 559
Target Start/End: Original strand, 15584594 - 15584681
Alignment:
Q  472 taaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||||| |||||||||| || | |||||||||| ||  ||||||||||||   ||| |||||||| |||||| |||||||||||||||    
T  15584594 taaatctataaattaacgatcaattttataaaacaaatagttatttatcggcatttatattttagaaaatataatttcataagaaaaa 15584681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 29923677 - 29923591
Alignment:
Q  472 taaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    |||||||||||| |||| || | |||||| || ||| ||||||| ||||  ||||| | |||||||| |||||||||||||||||||    
T  29923677 taaatcaataaagtaacgatcacttttattaagtaaaaagttatctatcaggttttatgttttaggatatatcatttcataagaaaa 29923591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 563
Target Start/End: Complemental strand, 43069377 - 43069339
Alignment:
Q  525 tttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  43069377 tttgtattttagaaaatatcatttcataagaaaaaacat 43069339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 562
Target Start/End: Original strand, 45704550 - 45704644
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaaca 562  Q
    ||||||| ||||||| |||||||| ||||||||  |||||  || | | |||||| |||| |||||||  |||||||||||||||| ||||||||    
T  45704550 ttcataattcaataagttaacaatcatttttatgtaataaagagatgtctatcgacttttatattttaaaaaatatcatttcataaaaaaaaaca 45704644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 564
Target Start/End: Complemental strand, 1343351 - 1343282
Alignment:
Q  495 ttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacatt 564  Q
    |||||| ||||||  |||||||||||||  ||| |||||||| ||| ||||||| |||||||||||||||    
T  1343351 ttttatgaaataaagagttatttatcgatatttatattttagaaaacatcattttataagaaaaaacatt 1343282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 16200458 - 16200527
Alignment:
Q  495 ttttataaaataataagttatttatcgagttttgtattttag-gaaatatcatttcataagaaaaaacat 563  Q
    |||||||||||||  ||||||||||| || ||| ||||||||  ||| ||||||||||||||||||||||    
T  16200458 ttttataaaataaagagttatttatcaaggtttatattttagaaaaacatcatttcataagaaaaaacat 16200527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 483 - 559
Target Start/End: Complemental strand, 15591727 - 15591651
Alignment:
Q  483 attaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||| | |||||| |||||| ||||||||| ||||  ||| ||| | || ||||||||||||||||||||||    
T  15591727 attaacaatcaattttatgaaataaaaagttatttgtcgacatttttatctcagaaaatatcatttcataagaaaaa 15591651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 559
Target Start/End: Original strand, 16086994 - 16087086
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||| ||||| |||| || | |||||| ||||||  |||||||| ||||  ||| |||||||| |||||| |||||| ||||||||    
T  16086994 cttcataaatctataaactaacgatcaattttatgaaataaatagttatttgtcgacatttatattttagaaaatatgatttcagaagaaaaa 16087086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 563
Target Start/End: Complemental strand, 30819815 - 30819712
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    ||||| || ||||||||||||||| ||||  |||||||||||  |||||  || ||||| | || |||| |||||||| |||||| | ||||||||||||    
T  30819815 tacatctatttcataaatcaataagttaatgattatttttatgtaataaagagatatttgttgacttttatattttagaaaatatta-ttcataagaaaa 30819717  T
Q  559 aacat 563  Q
    |||||    
T  30819716 aacat 30819712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 559
Target Start/End: Original strand, 43631103 - 43631195
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||| ||||| |||| || | |||||| ||||||  |||||||| ||||  ||| |||||||| |||||| |||||| ||||||||    
T  43631103 cttcataaatctataaactaacgatcaattttatgaaataaatagttatttgtcgacatttatattttagaaaatatgatttcagaagaaaaa 43631195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 24189100 - 24189195
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| |||| ||||| || ||||||||   ||||  || |||||||||| |||| |||||||| |||||| ||  |||||||||||||||    
T  24189100 ttcataaatctataagttaacgataatttttatgtgataaagagatatttatcgacttttatattttagaaaatattatcccataagaaaaaacat 24189195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 563
Target Start/End: Complemental strand, 20883936 - 20883886
Alignment:
Q  513 tatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| |||| |||||||| |||||| || ||||||||||||||||    
T  20883936 tatttatcgacttttatattttagaaaatattatctcataagaaaaaacat 20883886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 558
Target Start/End: Complemental strand, 41809559 - 41809466
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    ||||||| ||||| |||||||||| || | |||||| ||||||  | |||||| | ||  ||| |||||||| |||||||||||||||| ||||    
T  41809559 tacttcaaaaatctataaattaactatcaattttatgaaataaagaattatttgttgatatttatattttagaaaatatcatttcataaaaaaa 41809466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 471 - 563
Target Start/End: Original strand, 21946042 - 21946133
Alignment:
Q  471 ataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||||||||| |||||||| ||||||  || |||||| ||| ||||||||||||| |||||| |||||| || |||||||||    
T  21946042 ataaatcaataaattaacaatcatttttatgaaataaagagctatttaacga-ttttgtattttagaaaatattatttcacaaaaaaaaacat 21946133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 457 - 560
Target Start/End: Original strand, 28632049 - 28632152
Alignment:
Q  457 gatacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaa 556  Q
    |||| |||||| |||||||| |||||| || |||| |||||||||||||||  | ||||||||| | |||| |||||| | |||||||||||||| ||||    
T  28632049 gatatatttacctcataaattaataaactagcaataatttttataaaataaagaattatttatcaatttttatatttttgaaaatatcatttcatcagaa 28632148  T
Q  557 aaaa 560  Q
    ||||    
T  28632149 aaaa 28632152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 13091274 - 13091178
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| || |||||||| |||||| ||| ||||| | ||  ||| |||||||| |||||||||||||||||||||||    
T  13091274 ttacttcaaaaatttataaattaactatcatttttatgaaataaaaagctatttgttgatatttatattttagaaaatatcatttcataagaaaaaa 13091178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 25395163 - 25395067
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||| ||| ||| |||||||||||| ||||||||| |||||  || |||| || || |||| |||||||| |||||||||||| ||||||||||    
T  25395163 ttacttcctaattcagtaaattaacaatgatttttatacaataaagagctattcattgatttttatattttagaaaatatcatttcgtaagaaaaaa 25395067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 479 - 563
Target Start/End: Complemental strand, 29744248 - 29744164
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| || |||||||| ||||||  || ||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  29744248 ataaattaactatcatttttatgaaataaagagctatttattgatatttatattttagaaaatatcatttcataagaaaaaacat 29744164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 14575522 - 14575617
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| |||| ||||| || ||||||||   |||| ||| |||||||||| |||| |||||||| |||||| || ||||||||||||||||    
T  14575522 ttcataaatctataagttaacgataatttttatgtgataaaaagatatttatcgacttttatattttagaaaatattatctcataagaaaaaacat 14575617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 564
Target Start/End: Original strand, 13795333 - 13795417
Alignment:
Q  480 taaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacatt 564  Q
    ||||||||| |||||||||||  |||||  || ||||| | ||  ||| ||||||||||||| ||||||||||||||||||||||    
T  13795333 taaattaactattatttttatggaataaagagctatttgttgatatttatattttaggaaatgtcatttcataagaaaaaacatt 13795417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 14967592 - 14967496
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| || |||||||| |||||| ||| ||||| | ||  | | |||||||| |||||||||||||||||||||||    
T  14967592 ttacttcaaaaatttataaattaactatcatttttatgaaataaaaagctatttgttgatatctatattttagaaaatatcatttcataagaaaaaa 14967496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 469 - 560
Target Start/End: Original strand, 28638206 - 28638296
Alignment:
Q  469 tcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| |||||| || |||| |||||||||||||||  | ||||||||| | |||| |||||| | |||||||||||||||| ||||||    
T  28638206 tcataaattaataaactagcaataatttttataaaataaagaattatttatc-aattttatatttttgaaaatatcatttcataaaaaaaaa 28638296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 494 - 560
Target Start/End: Original strand, 4839521 - 4839587
Alignment:
Q  494 tttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||||||||  |||||||| |||| |||| |||||||| |||||||||||||| || |||||    
T  4839521 tttttataaaataaagagttatttgtcgatttttatattttagaaaatatcatttcatcaggaaaaa 4839587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 564
Target Start/End: Original strand, 34859495 - 34859580
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacatt 564  Q
    ||||||||||||| | ||| || |||||| ||| |||||||| |  ||| |||||||| ||| |||||||||||||||||| ||||    
T  34859495 ataaattaacaatcactttaatgaaataaaaaggtatttatcaatatttatattttagaaaacatcatttcataagaaaaaccatt 34859580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 471 - 563
Target Start/End: Complemental strand, 972503 - 972411
Alignment:
Q  471 ataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| |||| ||||| || ||||||||   ||||  || |||||||||| |||| |||||||| |||||||||| || ||||||||||||    
T  972503 ataaatctataagttaacgataatttttatgtgataaagagatatttatcgacttttatattttagaaaatatcattccacaagaaaaaacat 972411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 9589569 - 9589473
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| || |||||||| |||||| ||| ||||| | ||  ||| || ||||| |||||||||||||| ||||||||    
T  9589569 ttacttcaaaaatttataaattaactatcatttttatgaaataaaaagctatttgttgatatttatactttagaaaatatcatttcatgagaaaaaa 9589473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 560
Target Start/End: Complemental strand, 15264400 - 15264308
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||||||||| ||||  |||||||||||  ||||| | | || || | || |||| |||||||| |||||| ||||||||||||||||    
T  15264400 ttcataaatcaataagttaatgattatttttatgtaataaaaggatacttgttgacttttatattttagaaaatattatttcataagaaaaaa 15264308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 560
Target Start/End: Complemental strand, 27118060 - 27117980
Alignment:
Q  480 taaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||| |||||||||||  |||||  |||||||||| ||  ||| |||||||| |||| |||||| |||||||||||    
T  27118060 taaattaactattatttttatggaataaagagttatttattgatatttatattttagaaaatgtcattttataagaaaaaa 27117980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 479 - 563
Target Start/End: Complemental strand, 32624522 - 32624438
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| || ||||||||||||||| ||||||||| || |  ||| |||||||| |||  |||| |||||| |||||||||    
T  32624522 ataaattaacgatcatttttataaaataaaaagttatttgtcaatatttatattttagaaaacgtcatatcataaaaaaaaacat 32624438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 479 - 563
Target Start/End: Complemental strand, 41802453 - 41802369
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| || |||||||| ||||||  || ||||| | ||  |||||||||||| ||||| ||||| ||||||||||||||    
T  41802453 ataaattaactatcatttttatgaaataaagagctatttgttgatatttgtattttagaaaataacatttaataagaaaaaacat 41802369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 559
Target Start/End: Original strand, 13645565 - 13645660
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||| |||||| |||||||||| || | |||||| ||||||  |||||||| |||   ||| ||| |||| ||| ||||||||||||||||||    
T  13645565 ttacttcctaaatctataaattaacgatcaattttatgaaataaatagttatttgtcggcatttatatcttagaaaacatcatttcataagaaaaa 13645660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 560
Target Start/End: Original strand, 23258563 - 23258670
Alignment:
Q  453 tattgatacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcata 552  Q
    ||||| ||| ||||||| ||||||| | |||||||| || | |||||| ||||||  | |||||||||||  ||| ||||||   |||| ||||||||||    
T  23258563 tattggtacttttactttataaatctacaaattaacgatcaattttattaaataaagaattatttatcgacatttatattttgaaaaatttcatttcata 23258662  T
Q  553 agaaaaaa 560  Q
    ||||||||    
T  23258663 agaaaaaa 23258670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 564
Target Start/End: Original strand, 35817403 - 35817494
Alignment:
Q  473 aaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacatt 564  Q
    ||||| || ||||||| || |||||||| |||||| | | ||||| | ||  ||| |||||||| ||||||||||||||||| |||||||||    
T  35817403 aaatctatcaattaactataatttttatgaaataaaatgctatttgttgatatttatattttagaaaatatcatttcataaggaaaaacatt 35817494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 559
Target Start/End: Original strand, 37431411 - 37431490
Alignment:
Q  480 taaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||| ||||||||||| ||||||  || ||||| | ||  ||| |||||||| |||| |||||||||||||||||    
T  37431411 taaattaactattatttttatgaaataaagagctatttgttgatatttatattttagaaaatgtcatttcataagaaaaa 37431490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 43167299 - 43167204
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||| ||||  || || |||||  || ||  || ||||| |||| |||| |||||||| |||||| |||||||||||||||||||    
T  43167299 ttcataaatcaataagttaaagatcatctttatgtaacaaagagctatttgtcgacttttatattttagaaaatattatttcataagaaaaaacat 43167204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 479 - 560
Target Start/End: Complemental strand, 31076892 - 31076810
Alignment:
Q  479 ataaattaacaattattttt-ataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||||||||||||| |||||||||  | | |||| | ||  ||| |||||||| |||||||||||||||| ||||||    
T  31076892 ataaattaacaattattttttataaaataaagaataatttgttgatatttttattttagaaaatatcatttcataaaaaaaaa 31076810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 471 - 561
Target Start/End: Complemental strand, 32092435 - 32092345
Alignment:
Q  471 ataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    |||||||||||| ||| | || ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  32092435 ataaatcaataagttatcgatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaac 32092345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 471 - 564
Target Start/End: Original strand, 33654881 - 33654972
Alignment:
Q  471 ataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacatt 564  Q
    |||||| | ||||||||| ||||||||||| ||||||  |||||||| | || |||| |||||||  ||| || |||||||||| |||||||||    
T  33654881 ataaattattaaattaacgattatttttatgaaataaagagttatttgttgacttttatatttta--aaaaattatttcataagcaaaaacatt 33654972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 14054770 - 14054677
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| | || |||||| |  |||||  || |||||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  14054770 ttcataaatcaataagttatcgatcatttttctgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaac 14054677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 560
Target Start/End: Complemental strand, 35682452 - 35682359
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||| |||||||||||||| | || |||||||| ||||||  || ||| | | ||  ||| |||||||  |||||||||||||||||||||||    
T  35682452 cttcaaaaatcaataaattacctatcatttttatgaaataaagagctatatgttgatatttatattttaaaaaatatcatttcataagaaaaaa 35682359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 36091419 - 36091323
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| || |||||||| |||||| ||| ||||| | ||  |||||||||||| |||||||||||||||||||||||    
T  36091419 ttacttcaaaaatttataaattaactatcatttttatgaaataaaaagctatttgttgatatttgtattttagaaaatatcatttcataagaaaaaa 36091323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 561
Target Start/End: Original strand, 52759836 - 52759929
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| |||||||||||||| |||||  || |||||||| | |||| |||||||| |||||| |||| |||| |||||||    
T  52759836 ttcataaatcaataagttatcaattatttttatataataaagagatatttatcaacttttatattttagaaaatattattttataaaaaaaaac 52759929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 9858610 - 9858514
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| ||||||||||| |||||| ||| ||||| | ||  ||| |||||||| ||||||||||| |||||||||||    
T  9858610 ttacttcaaaaatttataaattaactattatttttatgaaataaaaagctatttgttgatatttatattttagaaaatatcattttataagaaaaaa 9858514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 463 - 559
Target Start/End: Original strand, 42881084 - 42881180
Alignment:
Q  463 tttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||||||| |||||| ||||||||||||| | |||||| ||||||  ||||||||||||   ||| |||||||| ||||||| | ||||||||||||    
T  42881084 tttacttcttaaatctataaattaacaatcaattttatgaaataaatagttatttatcggcatttatattttagaaaatatcttctcataagaaaaa 42881180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 468 - 560
Target Start/End: Original strand, 55060301 - 55060393
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||||||||||||||||| ||||||||  ||||   || ||| | |||| |||| |||||||| |||||||||||||||| ||||||    
T  55060301 ttcataaatcaataaattaacaatcatttttatgtaatatagagctatctgtcgacttttatattttagaaaatatcatttcataaaaaaaaa 55060393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 468 - 560
Target Start/End: Complemental strand, 56272935 - 56272843
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||||||||  |||| || ||||||||  || ||  ||||||||||||| |||| |||||||| |||||| ||||||||||||||||    
T  56272935 ttcataaatcaataagctaacgatcatttttatgtaaaaaagagttatttatcgacttttatattttagaaaatattatttcataagaaaaaa 56272843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 30839283 - 30839385
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    ||||| || ||||||||||||||| ||| |||| ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| |||||||||    
T  30839283 tacatctatttcataaatcaataagttatcaatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaa 30839382  T
Q  559 aac 561  Q
    |||    
T  30839383 aac 30839385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 468 - 561
Target Start/End: Original strand, 30951173 - 30951266
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||||||| | || ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  30951173 ttcataaatcaataaattatcgatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaac 30951266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 492 - 560
Target Start/End: Complemental strand, 39915771 - 39915703
Alignment:
Q  492 tatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||||| ||| ||| ||| |||||| |||| |||||||||||||||||||| |||| ||||||    
T  39915771 tatttttataaagtaaaaagctatctatcgacttttatattttaggaaatatcattttataaaaaaaaa 39915703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 560
Target Start/End: Complemental strand, 47302741 - 47302661
Alignment:
Q  480 taaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||| ||||||||||| ||||||  |||||||| | ||  ||| |||||||| |||| ||||||||||||||||||    
T  47302741 taaattaactattatttttatgaaataaagagttatttgttgatatttatattttagaaaatgtcatttcataagaaaaaa 47302661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 560
Target Start/End: Original strand, 48253990 - 48254082
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||||||||| ||| |||| ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| |||||||||||    
T  48253990 ttcataaatcaataagttatcaatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaa 48254082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 4540606 - 4540701
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||||| |||||||| ||||||||  |||||  || | | ||| || |||| |||||||  ||||||||||||||||||||||||||    
T  4540606 ttcataattcaataagttaacaatcatttttatgtaataaagagatgtctattgacttttatattttaaaaaatatcatttcataagaaaaaacat 4540701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 16917581 - 16917486
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| |||| ||||| || ||||||||   ||||  || |||||||||| |||| |||||||| |||||| || ||||||||||||||||    
T  16917581 ttcataaatctataagttaacgataatttttatgtgataaagagatatttatcgacttttatattttagaaaatattatctcataagaaaaaacat 16917486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 464 - 563
Target Start/End: Complemental strand, 21424502 - 21424404
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||||||  |||||||||| |||||||| || |||||| |||||||||||| |  ||| |||||||| ||| ||||| |||||| || ||||||    
T  21424502 ttacttcataaattgataaattaacgattatttt-atgaaataaaaagttatttatcaatgtttatattttagaaaacatcatctcataataagaaacat 21424404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 22413917 - 22413822
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||| ||||  |||||||||||  |||||  || ||||| | || |||| |||||||  |||||| |||||||||||||||||||    
T  22413917 ttcataaatcaataagttaatgattatttttatgtaataaagagatatttgttgacttttatattttaaaaaatattatttcataagaaaaaacat 22413822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 39513013 - 39512918
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||||| |||| |||  |||||||  |||||  || | |||||||| |||| |||||||  ||||||||||||||||||||||||||    
T  39513013 ttcataattcaataagttaataatcttttttatgtaataaagagatgtttatcgacttttatattttaaaaaatatcatttcataagaaaaaacat 39512918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 562
Target Start/End: Original strand, 46564762 - 46564856
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaaca 562  Q
    ||||||||||||||  ||||  |||||||||||  |||||  || ||||| | || |||| |||||||| |||||| ||||||||||||||||||    
T  46564762 ttcataaatcaatacgttaatgattatttttatgtaataaagagatatttgttgacttttatattttagaaaatattatttcataagaaaaaaca 46564856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 561
Target Start/End: Original strand, 52104448 - 52104550
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    ||||| || ||||||||||||||| ||| | || ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| |||||||||    
T  52104448 tacatctatttcataaatcaataagttatcgatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaa 52104547  T
Q  559 aac 561  Q
    |||    
T  52104548 aac 52104550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 483 - 559
Target Start/End: Original strand, 11038110 - 11038186
Alignment:
Q  483 attaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||| | |||||| |||||| |||||||||||||   ||||||| | || |||||||||||||||| |||||    
T  11038110 attaacaatcaattttatgaaataaaaagttatttatcggcatttgtatctcagaaaatatcatttcataaaaaaaa 11038186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 31908803 - 31908707
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| || | |||||| |||||| ||| ||||| | ||  ||| |||||||  |||||||||||||||||||||||    
T  31908803 ttacttcaaaaatttataaattaactatcaattttatgaaataaaaagctatttgttgatatttatattttaaaaaatatcatttcataagaaaaaa 31908707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 560
Target Start/End: Original strand, 34936604 - 34936696
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||||||||| ||||| || ||||||||  || ||  || ||||  |||| |||| |||||||| |||||| ||||||||||||||||    
T  34936604 ttcataaatcaataagttaacgatcatttttatgtaaaaaatagctattcgtcgacttttatattttagaaaatattatttcataagaaaaaa 34936696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 559
Target Start/End: Complemental strand, 47920633 - 47920541
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||| |||||||||||| |||  || |||||||| |||||| ||||||| | ||||  ||| |||||||| |||||| |||| ||||||||||    
T  47920633 cttcttaaatcaataaagtaaagatcatttttatgaaataaaaagttatatgtcgatatttatattttagaaaatattattttataagaaaaa 47920541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 52940811 - 52940743
Alignment:
Q  495 ttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||| ||||||  |||||||||||||  ||| |||||||| ||| ||||||| ||||||||||||||    
T  52940811 ttttatgaaataaagagttatttatcgatatttatattttagaaaacatcattttataagaaaaaacat 52940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 559
Target Start/End: Original strand, 43959039 - 43959134
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||| |||||| |||||||||| || | |||||| ||||||  ||| |||| |||   ||| |||||||| ||| ||||||||||||||||||    
T  43959039 ttacttcctaaatctataaattaacgatcaattttatgaaataaatagtcatttgtcggcatttatattttagaaaacatcatttcataagaaaaa 43959134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 551
Target Start/End: Complemental strand, 48058833 - 48058750
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcat 551  Q
    |||||||||||||||  |||| || ||||||||  || || ||  |||||||||| |||| |||||||| ||||||||||||||    
T  48058833 ttcataaatcaataagctaacgatcatttttatgtaaaaaaaaactatttatcgacttttatattttagaaaatatcatttcat 48058750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 9579711 - 9579808
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||  |||| |||||||||||||| || ||||||  ||||||| ||| |  ||| |||||||| ||| ||||||| ||||||||||||||    
T  9579711 tacttcaaaaatttataatttaacaattatttt-atgaaataaagagttattcatcaatatttatattttagaaaacatcattttataagaaaaaacat 9579808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 9585406 - 9585503
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||  |||| |||||||||||||| || ||||||  ||||||| ||| |  ||| |||||||| ||| ||||||| ||||||||||||||    
T  9585406 tacttcaaaaatttataatttaacaattatttt-atgaaataaagagttattcatcaatatttatattttagaaaacatcattttataagaaaaaacat 9585503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 471 - 561
Target Start/End: Complemental strand, 20927795 - 20927705
Alignment:
Q  471 ataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    |||||||||||| ||| | || ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  20927795 ataaatcaataagttatcgatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaac 20927705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 561
Target Start/End: Complemental strand, 23390866 - 23390764
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    ||||| || ||||||||||||||| ||| | || |||||| |  |||||  || |||||||| | |||| |||||||| |||||| |||| |||||||||    
T  23390866 tacatctatttcataaatcaataagttatcgatcatttttctgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaa 23390767  T
Q  559 aac 561  Q
    |||    
T  23390766 aac 23390764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 482 - 548
Target Start/End: Original strand, 24885717 - 24885783
Alignment:
Q  482 aattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcattt 548  Q
    ||||||| ||||||| ||||||||||  |||||||| || | |||| |||||||||||||| |||||    
T  24885717 aattaacgattatttctataaaataaagagttatttgtcaatttttatattttaggaaataccattt 24885783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 560
Target Start/End: Complemental strand, 48018476 - 48018394
Alignment:
Q  478 aataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||||  ||||||||||| |||||| ||  ||||| | || |||| |||||||| |||||| |||||| |||||||||    
T  48018476 aataaattaatgattatttttatgaaataaaaaactatttgttgatttttatattttagaaaatataatttcagaagaaaaaa 48018394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 56361426 - 56361460
Alignment:
Q  529 tattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||| |||||||||||||||||||||    
T  56361426 tattttaggaaatgtcatttcataagaaaaaacat 56361460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 560
Target Start/End: Complemental strand, 10332985 - 10332900
Alignment:
Q  475 atcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| | ||| || ||||||||| |||||  || ||||||| || |||| |||||||| |||||| |||| |||||||||||    
T  10332985 atcaataagtcaacgatcatttttatataataaagagatatttattgacttttatattttagaaaatattattttataagaaaaaa 10332900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Original strand, 25814430 - 25814523
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||| ||||| ||| | || ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  25814430 ttcataaattaataagttatcgatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaac 25814523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 40319357 - 40319264
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| | || |||||| |  |||||  || |||||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  40319357 ttcataaatcaataagttatcgatcatttttctgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaac 40319264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 561
Target Start/End: Original strand, 53695447 - 53695528
Alignment:
Q  480 taaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||| |||||||||||  |||||  |||||||| | ||  ||| |||||||| |||| | |||||||||||||||||    
T  53695447 taaattaactattatttttatggaataaagagttatttgttgatatttatattttagaaaatgttatttcataagaaaaaac 53695528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 27353207 - 27353111
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||| | ||||| |||||||||| ||||||||||||||||||  || ||||||| ||  |||||||||||| |||||| |||| |||||||||||    
T  27353207 ttactttaaaaatctataaattaactattatttttataaaataaagagctatttattgatatttgtattttagaaaatataattttataagaaaaaa 27353111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 471 - 558
Target Start/End: Original strand, 29451067 - 29451154
Alignment:
Q  471 ataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    |||||||||||||||||||||||||||||||||||||  |  ||||| |||| |||| | |||||| |||||| ||||||| ||||||    
T  29451067 ataaatcaataaattaacaattatttttataaaataaagaactatttgtcgatttttatcttttagaaaatataatttcatgagaaaa 29451154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 51977904 - 51978002
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| |||||  ||||||||| |||||||||||  |||||  |||||||| | ||  ||| ||||||||||||| |||||||||||||||||||||    
T  51977904 tacttcaaaaatctttaaattaactattatttttatggaataaagagttatttgttgatgtttatattttaggaaatgtcatttcataagaaaaaacat 51978002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 472 - 553
Target Start/End: Original strand, 51229643 - 51229724
Alignment:
Q  472 taaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataa 553  Q
    |||||||||| |||||||||||||||||||||||||  || ||||| || | |||| | |||||| |||| |||||||||||    
T  51229643 taaatcaatatattaacaattatttttataaaataaatagatatttgtcaacttttatgttttagaaaatgtcatttcataa 51229724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 563
Target Start/End: Complemental strand, 20280567 - 20280483
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||| |||||||| |||||| ||||||||| || |  ||| |||||||| |||  |||| ||||||||||||||||    
T  20280567 ataaattaacaatcatttttatgaaataaaaagttatttgtcaatatttatattttagaaaacgtcatatcataagaaaaaacat 20280483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 23304768 - 23304673
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| ||||||||||| |||||| ||| ||||| | ||  ||| |||||||| ||||||||||| |||||||||||    
T  23304768 ttacttcaaaaatttataaattaactattatttttatgaaataa-aagctatttgttgatatttatattttagaaaatatcatttaataagaaaaaa 23304673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 563
Target Start/End: Complemental strand, 36672295 - 36672191
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    ||||| || |||||||||| |||| ||||| || ||||||||   ||||  || |||||||||| |||| |||||||| |||||| || |||||||||||    
T  36672295 tacatctatttcataaatctataagttaacgataatttttatgtgataaagagatatttatcgacttttatattttagaaaatattatctcataagaaaa 36672196  T
Q  559 aacat 563  Q
    |||||    
T  36672195 aacat 36672191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 563
Target Start/End: Original strand, 41550208 - 41550292
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| ||||||||||| |||||| ||||||||| || |  ||| |||||||| |||  |||| ||||||||||||||||    
T  41550208 ataaattaacgattatttttatgaaataaaaagttatttgtcaatatttatattttagaaaacgtcatatcataagaaaaaacat 41550292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 560
Target Start/End: Original strand, 50239322 - 50239418
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| || |||||||| |||||| ||  ||||||| ||  ||| |||||||  |||||||||||||||||||||||    
T  50239322 ttacttcaaaaatttataaattaactatcatttttatgaaataaaaaaatatttattgatatttatattttaaaaaatatcatttcataagaaaaaa 50239418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 464 - 559
Target Start/End: Complemental strand, 7122316 - 7122221
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||||||| ||||  |||||||||| || |||||||| |||||| ||||||||| | ||   ||||||||||| ||||||||||| |||| |||||    
T  7122316 ttacttcaaaaatttataaattaactatcatttttatgaaataaaaagttatttgttgatacttgtattttagaaaatatcattttataaaaaaaa 7122221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 11444320 - 11444415
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||| ||||  |||||||||||  |||||  || ||||| | || |||| |||||||| |||||| |||| ||||||||||||||    
T  11444320 ttcataaatcaataagttaatgattatttttatgtaataaatagatatttgttgacttttatattttagaaaatattattttataagaaaaaacat 11444415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 465 - 560
Target Start/End: Complemental strand, 35910523 - 35910428
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||| |||||  ||||||||| |||||||||||| |||||  |||||||| | ||  ||| |||||||| |||| |||||| |||||||||||    
T  35910523 tacttcaaaaatctttaaattaactattatttttatagaataaagagttatttgttgatatttatattttagaaaatgtcattttataagaaaaaa 35910428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 39627877 - 39627972
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| |||| ||||| || ||||||||   ||||  || |||||||||| |||| |||||||| |||||||||| || ||||||||||||    
T  39627877 ttcataaatctataagttaacgataatttttatgtgataaagagatatttatcgacttttatattttagaaaatatcattccacaagaaaaaacat 39627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Original strand, 33485977 - 33486071
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatca-tttcataagaaaaaac 561  Q
    ||||||||||||||| ||| |||||||||||||  |||||  || |||||||| | |||| |||||||| |||||| | ||| ||||||||||||    
T  33485977 ttcataaatcaataagttatcaattatttttatgtaataaagagatatttatcaacttttatattttagaaaatattatttttataagaaaaaac 33486071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 473 - 559
Target Start/End: Complemental strand, 48796381 - 48796295
Alignment:
Q  473 aaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||| |||||||||  || | |||||| ||||||  |||||||| ||||  ||| |||||||| ||||||||||||||||||||||    
T  48796381 aaatctataaattaatgatcaattttatgaaataaatagttatttgtcgacatttatattttagaaaatatcatttcataagaaaaa 48796295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 561
Target Start/End: Original strand, 22667314 - 22667407
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| | || ||||||||  |||||  || |||||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  22667314 ttcataaatcaataagttatcgatcatttttatgtaataaagagatatttatcaacttttatattttagaaaatattattttataagaaaaaac 22667407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 560
Target Start/End: Complemental strand, 22821594 - 22821513
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||| ||||||||||| |||||| || |||||| || |  ||| |||||||  ||| |||||||||||||||||||    
T  22821594 ataaattaacgattatttttatgaaataaaaaattatttgtcaatatttatattttaaaaaacatcatttcataagaaaaaa 22821513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 560
Target Start/End: Original strand, 632709 - 632789
Alignment:
Q  480 taaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||||| |||||||||||  |||||  |||||||| | ||  ||| |||||||| |||| ||||||||||||||||||    
T  632709 taaattaactattatttttatggaataaagagttatttgttgatatttatattttagaaaatgtcatttcataagaaaaaa 632789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 465 - 561
Target Start/End: Original strand, 28791413 - 28791509
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||| |||||  ||||||||| |||||||||||| |||||  |||||||| | ||  ||| |||||||| |||| |||||| |||| |||||||    
T  28791413 tacttcaaaaatctttaaattaactattatttttatagaataaagagttatttgttgatatttatattttagaaaatgtcattttataaaaaaaaac 28791509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 472 - 532
Target Start/End: Original strand, 29852242 - 29852302
Alignment:
Q  472 taaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtatt 532  Q
    |||||||||||||||||||| |||||||| ||||||  |||||||| |||| |||| ||||    
T  29852242 taaatcaataaattaacaatcatttttatgaaataaatagttatttgtcgacttttatatt 29852302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 559
Target Start/End: Complemental strand, 30547968 - 30547876
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||| ||||| |||| || | |||||| ||||||  |||||||| ||||  ||| |||||||| |||||| |||||| ||||||||    
T  30547968 cttcataaatctataaactaacgatcaattttatgaaataaatagttatttgtcgacatttatattttagaaaatatgatttcagaagaaaaa 30547876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 479 - 563
Target Start/End: Original strand, 33771707 - 33771791
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| || |||||||| |||||| ||||||||| || |  ||| |||||||| |||  |||| ||||||||||||||||    
T  33771707 ataaattaacgatcatttttatgaaataaaaagttatttgtcaatatttatattttagaaaacgtcatatcataagaaaaaacat 33771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 559
Target Start/End: Original strand, 34100761 - 34100853
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||| ||||| |||| || | |||||| ||||||  |||||||| ||||  ||| |||||||| |||||| |||||| ||||||||    
T  34100761 cttcataaatctataaactaacgatcaattttatgaaataaatagttatttgtcgacatttatattttagaaaatatgatttcagaagaaaaa 34100853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 483 - 559
Target Start/End: Original strand, 46707408 - 46707484
Alignment:
Q  483 attaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||| | |||||| |||||| ||||||||| |||   ||||||| | || ||||||||||||||||||||||    
T  46707408 attaacaatcaattttatgaaataaaaagttatttgtcggcatttgtatctcagaaaatatcatttcataagaaaaa 46707484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 513 - 561
Target Start/End: Original strand, 48354804 - 48354852
Alignment:
Q  513 tatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    |||||||||| |||| |||||||| |||||| |||||||||||||||||    
T  48354804 tatttatcgacttttatattttagaaaatattatttcataagaaaaaac 48354852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 479 - 563
Target Start/End: Complemental strand, 49739476 - 49739392
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| || ||||||||||||||| || |||||| || |  ||| |||||||| |||  |||| ||||||||||||||||    
T  49739476 ataaattaacgatcatttttataaaataaaaatttatttgtcaatatttatattttagaaaacgtcatatcataagaaaaaacat 49739392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 12979939 - 12979844
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||| ||||  |||||||||||  |||||  || ||||| | || |||| |||||| | |||||| |||||||||| ||||||||    
T  12979939 ttcataaatcaataagttaatgattatttttatgtaataaagagatatttgttgacttttatattttggaaaatattatttcataaggaaaaacat 12979844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 26921725 - 26921820
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||  ||||  ||||| |||||  |||||  || ||||| | || |||| |||||||| |||||| |||||||||||||||||||    
T  26921725 ttcataaatcaatacgttaatgattatctttatgtaataaagagatatttgttgacttttatattttagaaaatattatttcataagaaaaaacat 26921820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 42647753 - 42647658
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||| ||||  || ||||||||  || ||  || || || |||| |||| |||||||| |||||| |||||||||||||||||||    
T  42647753 ttcataaatcaataagttaaatatcatttttatgtaacaaagagctacttgtcgacttttatattttagaaaatattatttcataagaaaaaacat 42647658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 26423888 - 26423985
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||  |||| |||| ||||||||| || ||||||  ||||||| |||||  ||| |||||||| ||| ||||||| ||||||||||||||    
T  26423888 tacttcaaaaatttataatttaataattatttt-atgaaataaagagttattcatcgatatttatattttagaaaacatcattttataagaaaaaacat 26423985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 48616495 - 48616593
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| |||||  ||||||||  |||||||||||  |||||  || ||||| | ||  |||||||||||| |||| ||||||||| |||||||||||    
T  48616495 tacttcaaaaatctttaaattaattattatttttatggaataaagagctatttgttgatatttgtattttagaaaatgtcatttcattagaaaaaacat 48616593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 563
Target Start/End: Original strand, 51401877 - 51401927
Alignment:
Q  513 tatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||| | |||| |||||||| |||||| |||||||||||||||||||    
T  51401877 tatttatcaacttttatattttagaaaatattatttcataagaaaaaacat 51401927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 558
Target Start/End: Complemental strand, 32627637 - 32627592
Alignment:
Q  513 tatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    |||||||||| |||| |||||||| ||||||||||||||| |||||    
T  32627637 tatttatcgacttttatattttagaaaatatcatttcatacgaaaa 32627592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 560
Target Start/End: Original strand, 33234115 - 33234196
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||| || |||||||| |||||| ||||||||| || |  ||| |||||||| |||  |||| |||||||||||||    
T  33234115 ataaattaacgatcatttttatgaaataaaaagttatttgtcaatatttatattttagaaaacgtcatatcataagaaaaaa 33234196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 560
Target Start/End: Complemental strand, 52261171 - 52261078
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||| |||||  ||||||||| |||||||| ||| | |||  |||||||| | ||  ||| |||||||| |||| ||||||||||||||||||    
T  52261171 cttcaaaaatctttaaattaactattattttaatagattaaagagttatttgttgatatttatattttagaaaatgtcatttcataagaaaaaa 52261078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 17642434 - 17642338
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  |||||||||| || |||||||| |||||| ||| ||||| | ||  ||| |||||||| |||||||||||||||||||||||    
T  17642434 ttacttcaaaaatttataaattaactatcatttttatgaaataaaaagctatttgttgatatttatattttagaaaatatcatttcataagaaaaaa 17642338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 31940771 - 31940676
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||||| |||||||| ||||||||  |||||  || | | |||||| |||| |||||||  ||||||||||||||||||||||||||    
T  31940771 ttcataattcaataagttaacaatcatttttatgtaataaagagatgtctatcgacttttatattttaaaaaatatcatttcataagaaaaaacat 31940676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 563
Target Start/End: Original strand, 39347178 - 39347276
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| |||||  ||||||||| ||||||||||| ||||||  || ||||| | ||  ||| ||||||||||||| ||||||||| |||||||||||    
T  39347178 tacttcaaaaatctttaaattaactattatttttatgaaataaagagctatttgttgatatttatattttaggaaatgtcatttcattagaaaaaacat 39347276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 479 - 556
Target Start/End: Complemental strand, 32238281 - 32238205
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaa 556  Q
    |||||||||| || |||||||| |||||| ||||||||| |||| |||| |||||||  |||||||||||||||||||    
T  32238281 ataaattaacgatcatttttatgaaataa-aagttatttgtcgacttttatattttaaaaaatatcatttcataagaa 32238205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 464 - 557
Target Start/End: Complemental strand, 43921491 - 43921398
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaa 557  Q
    |||||||| ||||| ||| |||||| || |||||||| ||||||  || ||||| | ||  |||||||||||| ||||||||||||||||||||    
T  43921491 ttacttcaaaaatctatacattaactatcatttttatgaaataaagagctatttgttgatatttgtattttagaaaatatcatttcataagaaa 43921398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 2273370 - 2273274
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||| ||||  ||||||||||  | |||||||| |||||| ||| ||||| | ||  |||||||||||| ||||||||||| |||||||||||    
T  2273370 ttacttcaaaaatttataaattaactgtcatttttatgaaataaaaagctatttgttgatatttgtattttagaaaatatcattttataagaaaaaa 2273274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 563
Target Start/End: Complemental strand, 19725412 - 19725308
Alignment:
Q  459 tacatttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaa 558  Q
    ||||| || ||||||||||||||| ||||  || ||||||||  |||||  || ||||| | || |||| |||||||| |||||| ||||||||||||||    
T  19725412 tacatctatttcataaatcaataagttaatgataatttttatgtaataaagagatatttgttgacttttatattttagaaaatattatttcataagaaaa 19725313  T
Q  559 aacat 563  Q
    |||||    
T  19725312 aacat 19725308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 465 - 560
Target Start/End: Complemental strand, 529630 - 529535
Alignment:
Q  465 tacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    ||||||| |||||  ||||||||| |||||||||||| |||||  |||||||| | ||  ||| |||||||| |||| |||||| |||||||||||    
T  529630 tacttcaaaaatctttaaattaactattatttttatagaataaagagttatttgttgatatttatattttagaaaatgtcattttataagaaaaaa 529535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 3643031 - 3642936
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||  ||||  |||||||||||  |||||  || ||||| | || |||| |||||||| |||||| |||||||||||||||||||    
T  3643031 ttcataaatcaatacgttaatgattatttttatgtaataaagagatatttgttgacttttatattttagaaaatattatttcataagaaaaaacat 3642936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 12980370 - 12980275
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||| ||| ||||| || ||||||||  |||||  || ||||| |||  |||| |||||||| |||||| |||||||||||||||||||    
T  12980370 ttcataaatcattaagttaacgatcatttttatgtaataaagagatatttgtcggcttttatattttagaaaatattatttcataagaaaaaacat 12980275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 36496194 - 36496289
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||| ||||||| |||||||| ||||||||  |||||  || | | ||| || |||| |||||||  ||||||||||||||||||||||||||    
T  36496194 ttcataattcaataagttaacaatcatttttatgtaataaagagatgtctattgacttttatattttaaaaaatatcatttcataagaaaaaacat 36496289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 464 - 559
Target Start/End: Complemental strand, 43049896 - 43049801
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||||||| ||||| |||||||||| ||||||||||| ||||||  || ||||| | ||  ||| |||||||| ||||||||||| |||| |||||    
T  43049896 ttacttcaaaaatctataaattaactattatttttatgaaataaagagctatttgttgatatttatattttagaaaatatcattttataaaaaaaa 43049801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 479 - 563
Target Start/End: Complemental strand, 3053145 - 3053061
Alignment:
Q  479 ataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| || |||||||| |||||| ||||||||| || |  ||| |||||||| |||  |||| ||||||||||||||||    
T  3053145 ataaattaacgatcatttttatgaaataaaaagttatttgtcaatatttatattttagaaaacgtcatatcataagaaaaaacat 3053061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 559
Target Start/End: Complemental strand, 6631471 - 6631379
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    ||||||||||| ||||| |||| || | |||||| ||||||| |||||||| |||   ||| |||||||| |||||| |||||| ||||||||    
T  6631471 cttcataaatctataaactaacgatcaattttatgaaataattagttatttgtcggcatttatattttagaaaatatgatttcagaagaaaaa 6631379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 27970342 - 27970274
Alignment:
Q  495 ttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||| ||||||  |||||||||||||  ||| |||||||| ||| ||||||| ||||||||||||||    
T  27970342 ttttatgaaataaagagttatttatcgatatttatattttagaaaacatcattttataagaaaaaacat 27970274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 559
Target Start/End: Complemental strand, 31158912 - 31158820
Alignment:
Q  467 cttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaa 559  Q
    |||| |||||| |||||||||| |||| |||||| ||||||  ||||||||  ||   ||| |||||||  ||||||||||||||||||||||    
T  31158912 cttcctaaatctataaattaacgattaattttatgaaataaatagttatttgccggcatttatattttaaaaaatatcatttcataagaaaaa 31158820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 560
Target Start/End: Complemental strand, 43460707 - 43460615
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaa 560  Q
    |||||||||||||||  |||| || ||||||||  || ||  || ||||| |||| |||| |||||||| |||||| ||||||||||||||||    
T  43460707 ttcataaatcaataagctaacgatcatttttatgtaaaaaagagctatttgtcgacttttatattttagaaaatattatttcataagaaaaaa 43460615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 9008087 - 9008181
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||  |||||||||| |||||||| || |||||| |||||||||||| |  ||| |||||||| ||| ||||| |||||| || ||||||    
T  9008087 ttcataaattgataaattaacgattatttt-atgaaataaaaagttatttatcaatgtttatattttagaaaacatcatctcataataagaaacat 9008181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 563
Target Start/End: Original strand, 9178769 - 9178864
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||| |||| ||||| || ||||||||   ||||  || |||||||||| |||| |||||||| |||||| ||  |||||||||||||||    
T  9178769 ttcataaatctataagttaacgataatttttatgtgataaagagatatttatcgacttttatattttagaaaatattatcccataagaaaaaacat 9178864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 563
Target Start/End: Complemental strand, 33628719 - 33628624
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||| ||| | || ||||||||  |||||  || |||||||| | |||| |||||||  |||||| |||| ||||||||||||||    
T  33628719 ttcataaatcaataagttatcgatcatttttatgtaataaagagatatttatcaacttttatattttaaaaaatattattttataagaaaaaacat 33628624  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 563
Target Start/End: Original strand, 40547736 - 40547834
Alignment:
Q  464 ttacttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||||||||  ||||||||||||||| |||||| |||||| ||  |||||||| |  ||| |||||||| ||| ||||| |||||| || ||||||    
T  40547736 ttacttcataaattgataaattaacaatta-ttttatgaaataaaaatctatttatcaatgtttatattttagaaaacatcatctcataataagaaacat 40547834  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 481 - 563
Target Start/End: Original strand, 29039676 - 29039758
Alignment:
Q  481 aaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    |||||||| || |||||||| |||||| ||||||||| || |  ||| |||||||| |||  |||| ||||||||||||||||    
T  29039676 aaattaacgatcatttttatgaaataaaaagttatttgtcaatatttatattttagaaaacgtcatatcataagaaaaaacat 29039758  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Original strand, 16871614 - 16871707
Alignment:
Q  468 ttcataaatcaataaattaacaattatttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaac 561  Q
    ||||||||||||||| ||| | || ||||||||  |||||  || | |||||| | |||| |||||||| |||||| |||| ||||||||||||    
T  16871614 ttcataaatcaataacttatcgatcatttttatgtaataaagagatctttatcaacttttatattttagaaaatattattttataagaaaaaac 16871707  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 43841919 - 43841988
Alignment:
Q  494 tttttataaaataataagttatttatcgagttttgtattttaggaaatatcatttcataagaaaaaacat 563  Q
    ||||||||||||||  | ||||||||| |  ||| |||||||   |||||||||||||||||||||||||    
T  43841919 tttttataaaataaataattatttatcaatatttatattttatagaatatcatttcataagaaaaaacat 43841988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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