View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4456-Insertion-5 (Length: 758)
Name: NF4456-Insertion-5
Description: NF4456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4456-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 703; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 8 - 758
Target Start/End: Complemental strand, 46631998 - 46631248
Alignment:
| Q |
8 |
ccagcttgtggggggagtaataaatataattactttgtaggtttagttgtagtattttggctttatcattttgttagatagtttgttagtctccttctta |
107 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
46631998 |
ccagcttgtggggggagtaataaatgtaattactttgtaggtttagttgtagtattttggttttgtcattttgttagatagtttgttagtctccttctta |
46631899 |
T |
|
| Q |
108 |
catttaggaaagtcagtttggattctcagtatataaacattggggtcacctttccatataattgtaatatacatttttatcaaagaatacacatgagaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631898 |
catttaggaaagtcagtttggattctcagtatataaacattggggtcacctttccatataattgtaatatacatttttatcaaagaatacacatgagaca |
46631799 |
T |
|
| Q |
208 |
tattcagcttatatttctctttgttgccctttttctcaatataatgattcaaatttttaccaaccttcatagctaattcattgagtttgaactttaagtt |
307 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46631798 |
tattcaacttatatttctctttgttgccctttttctcaatataattattccaatttttaccaaccttcattgctaattcattgagtttgaactttaagtt |
46631699 |
T |
|
| Q |
308 |
ttttatccaaacatgacatatatataatgataaaataagaatggatggaaattattatctcctcaatgtctcgaatgattactttggttatttgatgtga |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631698 |
gtttatccaaacatgacatatatataatgataaaataagaatggatggaaattattatctcctcaatgtctcgaatgattactttggttatttgatgtga |
46631599 |
T |
|
| Q |
408 |
attttttctgcttttctaactctagatggagtagatacgatttcattacaaggaacatgaagaggagacttaccctttaatgtcgggttacaatgattct |
507 |
Q |
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| T |
46631598 |
attttttctgcttttctaactctagatggagtagatgcgatttcattacaaggaacatgaagaggagacttaccctttaatgtcgggttacaatgattct |
46631499 |
T |
|
| Q |
508 |
accaattatttcattaatagctataagatatcaaaccatattgcaatggttccatccatcatggatatcttctatcataagctacactattgaagttcac |
607 |
Q |
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| T |
46631498 |
accaattatttcattaatagctataagatatcaaaccatattgcaatggttccatccatcatggatatcttctatcataagctacactattgaagttcac |
46631399 |
T |
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| Q |
608 |
tcaccctgtgatgttcaatatccatttaacaaaagatagatgttccggtaccagtcaaaatataattcaaccaatattgtataaataaatggaaaaccaa |
707 |
Q |
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| T |
46631398 |
tcaccgtgtgatgttcaatatccatttaacaaaagatagatgttccggtaccagtcaaaatataattcaaccaatattgtataaataaatggaaaacaaa |
46631299 |
T |
|
| Q |
708 |
cacattacaaaatttccaacattgatccacttggacaacattttgatttat |
758 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631298 |
cacattgcaaaatttccaacattgatccacttggacaacattttgatttat |
46631248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 672 - 756
Target Start/End: Complemental strand, 46639558 - 46639471
Alignment:
| Q |
672 |
attcaaccaatattgtataaataaatggaaaaccaacacatta---caaaatttccaacattgatccacttggacaacattttgattt |
756 |
Q |
| |
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| T |
46639558 |
attcaatcaatgttgtataaatgaatggaagaccaacacataaaaacaaaatttctaacattcttccacttggacgacattttgattt |
46639471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 6e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 343 - 728
Target Start/End: Original strand, 15767278 - 15767683
Alignment:
| Q |
343 |
taagaatggatggaaattattatctcctcaatgtctcgaatgattactttggttatttgatgtgaattttttctg---cttttctaactcta-gatggag |
438 |
Q |
| |
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|||||||| |||||||||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||| ||| ||||||| |
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| T |
15767278 |
taagaatgtatggaaattagtatctcttcaatgtcccgaatgat-actttggttatttgatgtgaattttttccggttcttttctaaccctaagatggag |
15767376 |
T |
|
| Q |
439 |
tagatacgatttcattacaaggaacatgaagaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatat |
538 |
Q |
| |
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|||| | |||||| |||| |||| ||| |||||||||||||| |||||| | ||||||| |||||||| ||||| ||| | || ||||||||||||| |
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| T |
15767377 |
tagaagcaatttcaa-acaaagaacgtgataaggagacttaccctataatgttgagttacaacgattctacaaattaattcgtcaaaagctataagatat |
15767475 |
T |
|
| Q |
539 |
caaaccatatt----------------gcaatggttccatccatcatggatatcttctat--cataagctacactattgaagttcactcaccctgtgatg |
620 |
Q |
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| T |
15767476 |
caaaccatattttaccatgaaaaagttgcaatggttccatccatcatggatctcttctatatcatatgctacgctatttaagcacactcccggtgtaatg |
15767575 |
T |
|
| Q |
621 |
ttcaatatccatttaacaaaagatagatgttccggtaccagtcaaaatataattcaaccaatattgtataaataaatggaaaaccaacacattacaaaat |
720 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||| |||||||||||| |||||| || |||||||||| || ||||||||||||||| |||||| |
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| T |
15767576 |
ttcaatatccatttaacaaaagatagatattttggtacccgtcaaaatataactcaacctatgttgtataaatgaacggaaaaccaacacataacaaaac |
15767675 |
T |
|
| Q |
721 |
ttccaaca |
728 |
Q |
| |
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|||||||| |
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| T |
15767676 |
ttccaaca |
15767683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 547
Target Start/End: Complemental strand, 39905987 - 39905908
Alignment:
| Q |
468 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaaccata |
547 |
Q |
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| T |
39905987 |
agaggggacctaccctttcatgtagggttacaatggttctaccaattctttcatgaatagccataaggtatcaaaccata |
39905908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 547
Target Start/End: Original strand, 25019832 - 25019911
Alignment:
| Q |
468 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaaccata |
547 |
Q |
| |
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| T |
25019832 |
agaggggacctaccctttcatgtagggttacaatggttctaccaattctttcatgaatagtcataaggtatcaaaccata |
25019911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 548
Target Start/End: Original strand, 40887443 - 40887523
Alignment:
| Q |
468 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaaccatat |
548 |
Q |
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| T |
40887443 |
agaggagacctaccttttcatgtagggttacaacggttctaccaattctttcatgaatagtcataaggtatcaaaccatat |
40887523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 543
Target Start/End: Original strand, 22382053 - 22382128
Alignment:
| Q |
468 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaac |
543 |
Q |
| |
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||||| ||| |||||||| |||| ||||||||||| ||||||||||| |||||| ||||| ||||| |||||||| |
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| T |
22382053 |
agaggggacctaccctttcatgtagggttacaatggttctaccaattctttcatgaatagtcataaggtatcaaac |
22382128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 547
Target Start/End: Complemental strand, 42257066 - 42256987
Alignment:
| Q |
468 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagatatcaaaccata |
547 |
Q |
| |
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||||| ||| |||||||| |||| ||||||||||| |||| ||||| |||||| ||||| |||||| |||||||||||| |
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| T |
42257066 |
agaggggacctaccctttcatgtagggttacaatggctctatcaattctttcatgaatagttataaggtatcaaaccata |
42256987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 527
Target Start/End: Original strand, 17481538 - 17481597
Alignment:
| Q |
468 |
agaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatag |
527 |
Q |
| |
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||||| ||| |||||||| |||| ||||||||||| ||||||||||| |||||| ||||| |
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| T |
17481538 |
agaggggacctaccctttcatgtagggttacaatggttctaccaattctttcatgaatag |
17481597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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