View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4456-Insertion-6 (Length: 226)

Name: NF4456-Insertion-6
Description: NF4456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4456-Insertion-6
NF4456-Insertion-6
[»] chr3 (8 HSPs)
chr3 (8-226)||(53981711-53981929)
chr3 (75-222)||(33909472-33909622)
chr3 (61-222)||(38300579-38300744)
chr3 (153-222)||(48407598-48407670)
chr3 (122-221)||(31563892-31563994)
chr3 (61-187)||(38300414-38300541)
chr3 (14-46)||(10758998-10759030)
chr3 (14-46)||(33909620-33909652)
[»] chr8 (11 HSPs)
chr8 (79-222)||(7622006-7622149)
chr8 (93-222)||(21505089-21505218)
chr8 (72-216)||(3537727-3537870)
chr8 (153-221)||(27402335-27402403)
chr8 (62-189)||(7622150-7622277)
chr8 (153-222)||(43984236-43984308)
chr8 (75-120)||(36994086-36994131)
chr8 (79-131)||(7621806-7621858)
chr8 (14-46)||(33435761-33435793)
chr8 (125-221)||(34248189-34248285)
chr8 (14-46)||(36039784-36039816)
[»] chr1 (11 HSPs)
chr1 (62-222)||(19481523-19481686)
chr1 (80-219)||(35892376-35892514)
chr1 (61-136)||(14368888-14368963)
chr1 (75-131)||(35024598-35024654)
chr1 (61-136)||(19481218-19481293)
chr1 (61-131)||(482586-482655)
chr1 (151-223)||(35891839-35891910)
chr1 (183-221)||(13356869-13356907)
chr1 (153-222)||(40367698-40367770)
chr1 (86-168)||(38739764-38739848)
chr1 (14-46)||(17419869-17419901)
[»] chr4 (8 HSPs)
chr4 (151-222)||(27048329-27048400)
chr4 (122-222)||(34206147-34206247)
chr4 (61-115)||(34206119-34206173)
chr4 (123-187)||(21497938-21498002)
chr4 (14-46)||(991286-991318)
chr4 (14-46)||(8559961-8559993)
chr4 (14-46)||(10390465-10390497)
chr4 (14-46)||(21646794-21646826)
[»] chr7 (9 HSPs)
chr7 (107-222)||(13788746-13788861)
chr7 (75-222)||(12524947-12525093)
chr7 (149-222)||(43288376-43288449)
chr7 (150-219)||(23839002-23839071)
chr7 (151-222)||(12524649-12524720)
chr7 (61-131)||(14690980-14691050)
chr7 (14-46)||(8585173-8585205)
chr7 (14-46)||(12578450-12578482)
chr7 (14-46)||(23396896-23396928)
[»] chr2 (7 HSPs)
chr2 (151-222)||(29923410-29923481)
chr2 (85-222)||(901670-901810)
chr2 (151-222)||(30160137-30160211)
chr2 (61-131)||(10429680-10429748)
chr2 (14-46)||(5424772-5424804)
chr2 (14-46)||(6183356-6183388)
chr2 (14-46)||(22447182-22447214)
[»] chr5 (3 HSPs)
chr5 (149-222)||(4465104-4465177)
chr5 (14-46)||(24125144-24125176)
chr5 (14-46)||(27760457-27760489)
[»] chr6 (5 HSPs)
chr6 (151-222)||(5557194-5557265)
chr6 (14-46)||(15102614-15102646)
chr6 (14-46)||(16590266-16590298)
chr6 (14-46)||(16605082-16605114)
chr6 (14-46)||(17096688-17096720)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 53981929 - 53981711
Alignment:
Q  8 aatatcgttgaaatttggggtctaactcatcctaacaaatccaccctctcaaagcaactaagagcatatcgcaataaaggtgggattaccgacacacacc 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  53981929 aatatcgttgaaatttggggtctaactcatccttacaaatccaccctctcaaagaaactaggagcatatcgcaataaaggtgggattaccgacacacacc 53981830  T
Q  108 ctcacgcttggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggatagg 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53981829 ctcacgctcggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattgcggaatcccaatggtggaccttggatagg 53981730  T
Q  208 ctctgataccatgttaaaa 226  Q
    ||||||||| |||||||||    
T  53981729 ctctgatacgatgttaaaa 53981711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 33909472 - 33909622
Alignment:
Q  75 atcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggc 174  Q
    ||||||||||||||||||||||| |||||  ||||||| |||||||  ||||||||| ||||||||||||||| | || |||| |||||||||| |||||    
T  33909472 atcgcaataaaggtgggattaccaacacatcccctcacacttgggggaggatttccaacacactccctcgcactcagatccaacgggcatgaagcgtggc 33909571  T
Q  175 attgcggaatcc---caatggtggatcttggataggctctgataccatgtt 222  Q
    | ||||||||||   ||| ||||||||||||||||| ||||||||||||||    
T  33909572 aatgcggaatcccgacaacggtggatcttggataggatctgataccatgtt 33909622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 38300579 - 38300744
Alignment:
Q  61 gcaactaagagcatatcgcaataaaggtgggattaccga-cacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatg 159  Q
    ||||||| | ||| |||||||| |||||||  ||||| | ||||| |||||||  | |||| | |||||||| ||||| ||||| ||| | |||| ||||    
T  38300579 gcaactaggggcagatcgcaattaaggtggtcttaccaaacacaccccctcactttcggggcgagatttccaacacacaccctcacactcagacctaatg 38300678  T
Q  160 ggcatgaagtgtggcattgcggaatcc---caatggtggatcttggataggctctgataccatgtt 222  Q
    |||||| || |||||| ||||||||||   ||| ||| |||| |||||||||||||||||||||||    
T  38300679 ggcatgtagcgtggcaatgcggaatcccgacaacggtagatcctggataggctctgataccatgtt 38300744  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 48407670 - 48407598
Alignment:
Q  153 cccaatgggcatgaagtgtggcattgcggaatcc---caatggtggatcttggataggctctgataccatgtt 222  Q
    |||||||||||||||| |||||| ||||||||||   ||| ||| |||| |||||||||||||||||||||||    
T  48407670 cccaatgggcatgaagcgtggcaatgcggaatcccgacaacggtagatcctggataggctctgataccatgtt 48407598  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 31563892 - 31563994
Alignment:
Q  122 gggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattgcggaatccc---aatggtggatcttggataggctctgatacca 218  Q
    |||||||||| ||||| |||||   | | |||||||||| |||| || |||||| |||||||||||   || ||| ||||||||||||||||||||||||    
T  31563892 gggatttccaacacaccccctcatgctcagacccaatggacatgtagcgtggcaatgcggaatcccgacaacggtagatcttggataggctctgatacca 31563991  T
Q  219 tgt 221  Q
    |||    
T  31563992 tgt 31563994  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 38300414 - 38300541
Alignment:
Q  61 gcaactaagagcatatcgcaataaaggtgggattaccga-cacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatg 159  Q
    ||||||||| ||| |||||||| |||||||  ||||| | ||||| |||||||  | |||| | |||||||| ||||| ||||| | | | |||| ||||    
T  38300414 gcaactaagggcagatcgcaattaaggtggtcttaccaaacacaccccctcactttcggggcgagatttccaacacaccccctcacgctcagacctaatg 38300513  T
Q  160 ggcatgaagtgtggcattgcggaatccc 187  Q
    |||||| || |||||| |||||||||||    
T  38300514 ggcatgtagcgtggcaatgcggaatccc 38300541  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 10758998 - 10759030
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  10758998 gttgaaatttggggtctaactcatccttacaaa 10759030  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 33909620 - 33909652
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  33909620 gttgaaatttggggtctaactcatccttacaaa 33909652  T

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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 7622149 - 7622006
Alignment:
Q  79 caataaaggtgggattaccgacacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattg 178  Q
    |||| |||||||||||||| |||||| |||||||| |||||| |||||||||| ||||| ||||| ||| |  ||||||||||||||||| |||||| ||    
T  7622149 caatgaaggtgggattaccaacacaccccctcacgtttggggcgggatttccaacacaccccctcacactcttacccaatgggcatgaagcgtggcaatg 7622050  T
Q  179 cggaatcccaatggtggatcttggataggctctgataccatgtt 222  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||    
T  7622049 cggaatcccaagggtagatcttggataggctctgataccatgtt 7622006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 21505089 - 21505218
Alignment:
Q  93 ttaccgacacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattgcggaatcccaatgg 192  Q
    ||||| |||||| |||| ||||| |||| ||||||||||  |||| ||||| | | ||||||||||||||||||||||||||| ||| |||||| ||  |    
T  21505089 ttaccaacacaccccctaacgctcggggcgggatttccaaaacaccccctcacgctcggacccaatgggcatgaagtgtggcaatgctgaatccgaacag 21505188  T
Q  193 tggatcttggataggctctgataccatgtt 222  Q
    ||||||||| ||||||||||||||||||||    
T  21505189 tggatcttgaataggctctgataccatgtt 21505218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 216
Target Start/End: Complemental strand, 3537870 - 3537727
Alignment:
Q  72 catatcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgt 171  Q
    |||||| |||| ||| |||||||||| ||||| ||||||| |||| ||| | |||||||| ||||| |||||   |   |||||||||||||||||| ||    
T  3537870 catatcacaattaagatgggattaccaacaca-accctcatgcttagggcgagatttccaacacacaccctcatgctaagacccaatgggcatgaagcgt 3537772  T
Q  172 ggcattgcggaatcccaatggtggatcttggataggctctgatac 216  Q
    |||| | ||||||  ||| ||| |||||  |||||||||||||||    
T  3537771 ggcagtacggaatttcaacggtagatctcagataggctctgatac 3537727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 27402335 - 27402403
Alignment:
Q  153 cccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccatgt 221  Q
    ||||||||||  |||| |||||| ||||||||||||| ||| |||||||||||||||||  ||||||||    
T  27402335 cccaatgggccagaagcgtggcaatgcggaatcccaacggtagatcttggataggctctagtaccatgt 27402403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 7622277 - 7622150
Alignment:
Q  62 caactaagagcatatcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatggg 161  Q
    |||||||| | ||||| |||| |||||||||||||| || ||| |||||||| | |||| |||||||||| |||||  |||| ||| |   |||||||||    
T  7622277 caactaagggaatatcacaatgaaggtgggattaccaacgcaccccctcacgttcggggcgggatttccaacacacctcctcacactctagcccaatggg 7622178  T
Q  162 catgaagtgtggcattgcggaatcccaa 189  Q
    |||||||  ||||| ||| | |||||||    
T  7622177 catgaagcatggcaatgcaggatcccaa 7622150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 43984236 - 43984308
Alignment:
Q  153 cccaatgggcatgaagtgtggcattgcggaatccc---aatggtggatcttggataggctctgataccatgtt 222  Q
    |||||||||||||||| |||||| |||||||||||   || | | |||| |||||||||||||||||||||||    
T  43984236 cccaatgggcatgaagcgtggcaatgcggaatcccgacaacgttagatcctggataggctctgataccatgtt 43984308  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 36994086 - 36994131
Alignment:
Q  75 atcgcaataaaggtgggattaccgacacacaccctcacgcttgggg 120  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||||    
T  36994086 atcgcaacaaaggtgggattaccgacacaccccctcacgctcgggg 36994131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 7621858 - 7621806
Alignment:
Q  79 caataaaggtgggattaccgacacacaccctcacgcttggggagggatttcca 131  Q
    |||| |||||||||||||| || ||| ||||||||||||||| ||| ||||||    
T  7621858 caattaaggtgggattaccaacgcaccccctcacgcttggggcgggttttcca 7621806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 33435793 - 33435761
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  33435793 gttgaaatttggggtctaactcatccttacaaa 33435761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 34248285 - 34248189
Alignment:
Q  125 atttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccatgt 221  Q
    ||||||| ||||| ||||| |||  || | ||||||||  |||| |||||| ||| |||||| ||  || ||||||||||||||| |||||||||||    
T  34248285 atttccaacacaccccctcacacttgggctcaatgggccagaagcgtggcaatgcagaatccaaacagtagatcttggataggctatgataccatgt 34248189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 36039784 - 36039816
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  36039784 gttgaaatttggggtctaactcatccttacaaa 36039816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 19481523 - 19481686
Alignment:
Q  62 caactaagagcatatcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatggg 161  Q
    |||||| | ||| |||||||| |||||| ||||||| ||||||||||||||||| ||||  || |||||| ||||| ||||| | | | |||||||||||    
T  19481523 caactaggggcagatcgcaattaaggtgagattaccaacacacaccctcacgctcggggcagggtttccaacacaccccctcacgctcagacccaatggg 19481622  T
Q  162 catgaagtgtggcattgcggaatccc---aatggtggatcttggataggctctgataccatgtt 222  Q
    |||| || |||||| |||||||||||   |||||| |||||||||||||||||| |||||||||    
T  19481623 catggagcgtggcaatgcggaatcccgaaaatggtagatcttggataggctctggtaccatgtt 19481686  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 35892514 - 35892376
Alignment:
Q  80 aataaaggtgggattaccgacacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattgc 179  Q
    |||||| || |||||||| |||||| | |||||||| |||| |||||||||| ||||   |||| | | ||| ||||||||||||||||||||||| |||    
T  35892514 aataaatgtaggattaccaacacaccctctcacgctcggggcgggatttccaacacaactcctcacgctcgg-cccaatgggcatgaagtgtggcaatgc 35892416  T
Q  180 ggaatcccaatggtggatcttggataggctctgataccat 219  Q
    ||||||||||  || |||||||||||| ||||||||||||    
T  35892415 ggaatcccaacagtagatcttggatagactctgataccat 35892376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 14368888 - 14368963
Alignment:
Q  61 gcaactaagagcatatcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttccatcaca 136  Q
    |||||| |||||| |||||||| |||||||||||||| |||||| ||||||| |||||||||||||||||| ||||    
T  14368888 gcaactgagagcagatcgcaattaaggtgggattaccaacacaccccctcactcttggggagggatttccaacaca 14368963  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 35024598 - 35024654
Alignment:
Q  75 atcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttcca 131  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||    
T  35024598 atcgcaataaaggtgggattaccaacacaccccctcacgcttggggtgggatttcca 35024654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 19481293 - 19481218
Alignment:
Q  61 gcaactaagagcatatcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttccatcaca 136  Q
    ||||||| | ||| |||||||| |||||||||||||| |||||| ||||||| || |||| |||||||||| ||||    
T  19481293 gcaactaggggcagatcgcaattaaggtgggattaccaacacaccccctcacactcggggcgggatttccaacaca 19481218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 482655 - 482586
Alignment:
Q  61 gcaactaagagcatatcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttcca 131  Q
    ||||||| | ||| |||||||| |||||||||||||| |||||| |||||||||| |||| ||||||||||    
T  482655 gcaactaggggcagatcgcaatcaaggtgggattacc-acacaccccctcacgctcggggcgggatttcca 482586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 35891910 - 35891839
Alignment:
Q  151 gacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccatgtta 223  Q
    |||| ||||||||||||| |||||| ||  |||||  |||||| ||||||||||| |||||||||||||||||    
T  35891910 gaccaaatgggcatgaagcgtggcaatgaagaatct-aatggtagatcttggataagctctgataccatgtta 35891839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 13356869 - 13356907
Alignment:
Q  183 atcccaatggtggatcttggataggctctgataccatgt 221  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  13356869 atcccaacggtgtatcttggataggctctgataccatgt 13356907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 40367770 - 40367698
Alignment:
Q  153 cccaatgggcatgaagtgtggcattgcggaatcc---caatggtggatcttggataggctctgataccatgtt 222  Q
    |||||| ||||||||| |||||| ||||||||||   ||| ||| |||| ||||||||||| |||||||||||    
T  40367770 cccaatcggcatgaagcgtggcaatgcggaatcctgacaacggtagatcctggataggctcagataccatgtt 40367698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 38739848 - 38739764
Alignment:
Q  86 ggtgggattaccgacacacaccctcacgct--tggggagggatttccatcacactccctcgcacacggacccaatgggcatgaag 168  Q
    |||||||||||| |||||| ||||||||||   |||| ||||||||||  |||| ||||| | | | ||||||||||||||||||    
T  38739848 ggtgggattaccaacacaccccctcacgctcggggggtgggatttccaatacaccccctcacgctcagacccaatgggcatgaag 38739764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 17419901 - 17419869
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  17419901 gttgaaatttggggtctaactcatccttacaaa 17419869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 27048329 - 27048400
Alignment:
Q  151 gacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccatgtt 222  Q
    ||||||||||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||||||    
T  27048329 gacccaatgggcatgaagtgtggcaatgcggaatcctaacggtagatcttggataggctctgataccatgtt 27048400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 34206147 - 34206247
Alignment:
Q  122 gggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccatgt 221  Q
    |||||| ||| ||||| ||||| | | ||||||||| |||||||||   ||||| ||||||||||||| | | |||||||||||||||||||||||||||    
T  34206147 gggattaccaacacaccccctcacgctcggacccaacgggcatgaaccctggcaatgcggaatcccaacgatagatcttggataggctctgataccatgt 34206246  T
Q  222 t 222  Q
    |    
T  34206247 t 34206247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 34206119 - 34206173
Alignment:
Q  61 gcaactaagagcatatcgcaataaaggtgggattaccgacacacaccctcacgct 115  Q
    ||||||| | ||| ||||||||||||||||||||||| |||||| ||||||||||    
T  34206119 gcaactaggggcagatcgcaataaaggtgggattaccaacacaccccctcacgct 34206173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 21497938 - 21498002
Alignment:
Q  123 ggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattgcggaatccc 187  Q
    ||||||||| ||||| ||||| | | ||| |||||||||||||||| |||||| |||||||||||    
T  21497938 ggatttccaacacaccccctcacgctcgggcccaatgggcatgaagcgtggcaatgcggaatccc 21498002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 991318 - 991286
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  991318 gttgaaatttggggtctaactcatccttacaaa 991286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 8559961 - 8559993
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  8559961 gttgaaatttggggtctaactcatccttacaaa 8559993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 10390465 - 10390497
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  10390465 gttgaaatttggggtctaactcatccttacaaa 10390497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 21646794 - 21646826
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  21646794 gttgaaatttggggtctaactcatccttacaaa 21646826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 13788746 - 13788861
Alignment:
Q  107 cctcacgcttggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggatag 206  Q
    ||||| ||| |||| |||||||||| ||||| ||||| | | | |||||||||||||||||| || ||| ||||||||| ||| ||| ||||||||||||    
T  13788746 cctcatgctcggggcgggatttccaacacacaccctcacgctcagacccaatgggcatgaagcgtcgcaatgcggaatcgcaacggtagatcttggatag 13788845  T
Q  207 gctctgataccatgtt 222  Q
    ||||| ||||||||||    
T  13788846 gctctaataccatgtt 13788861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 12525093 - 12524947
Alignment:
Q  75 atcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggc 174  Q
    |||||||| |||||||||||||   ||||| |||| ||||| |||| | |||||| | ||||| ||| | | | | |||||||||| |||||||||||||    
T  12525093 atcgcaattaaggtgggattactagcacacccccttacgctcggggcgagatttctaacacaccccc-cacgctcagacccaatggacatgaagtgtggc 12524995  T
Q  175 attgcggaatcccaatggtggatcttggataggctctgataccatgtt 222  Q
    | ||||||||||||| ||| ||||||| |||| || ||||||||||||    
T  12524994 aatgcggaatcccaacggtagatcttgtatagactatgataccatgtt 12524947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 43288449 - 43288376
Alignment:
Q  149 cggacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccatgtt 222  Q
    |||||||||||||||||||| |  ||| ||||||||||||| ||| |||||||||| ||||||||| |||||||    
T  43288449 cggacccaatgggcatgaagcgcagcaatgcggaatcccaacggtagatcttggatgggctctgatgccatgtt 43288376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 23839002 - 23839071
Alignment:
Q  150 ggacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccat 219  Q
    ||||||||| ||| |||||  ||||| || |||||||||||||| | |||||||||||||||||||||||    
T  23839002 ggacccaataggcctgaagcatggcaatgtggaatcccaatggtaggtcttggataggctctgataccat 23839071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 12524720 - 12524649
Alignment:
Q  151 gacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccatgtt 222  Q
    ||||||||||| |||||| |||| | || |||||||||| ||| |||| ||||||| |||||||||||||||    
T  12524720 gacccaatgggaatgaagcgtggaaatgtggaatcccaacggtagatcatggatagtctctgataccatgtt 12524649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 14691050 - 14690980
Alignment:
Q  61 gcaactaagagcatatcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttcca 131  Q
    ||||||| | ||| |||||||| ||||| |||||||| |||||| |||||| ||| |||||||||||||||    
T  14691050 gcaactaggggcagatcgcaattaaggtaggattaccaacacaccccctcatgctcggggagggatttcca 14690980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 8585205 - 8585173
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  8585205 gttgaaatttggggtctaactcatccttacaaa 8585173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 12578450 - 12578482
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  12578450 gttgaaatttggggtctaactcatccttacaaa 12578482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 23396928 - 23396896
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  23396928 gttgaaatttggggtctaactcatccttacaaa 23396896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 29923481 - 29923410
Alignment:
Q  151 gacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccatgtt 222  Q
    |||||||||||| |||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||    
T  29923481 gacccaatgggcctgaagtgtggcaatgcggaatcccgacggtagatcttggataggctctgataccatgtt 29923410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 901810 - 901670
Alignment:
Q  85 aggtgggattaccgacacacaccctcacgcttggggagggatttccatcacactccctcgcacacggacccaatgggcatgaagtgtggcattgcggaat 184  Q
    |||||| |||||| || ||| |||||||| |||||| |||||||||| ||||| ||||| | | | | ||| |||||||||||| |||||| ||||||||    
T  901810 aggtggaattaccaacccaccccctcacgtttggggcgggatttccaacacaccccctcacgctcaggcccgatgggcatgaagcgtggcaatgcggaat 901711  T
Q  185 cc---caatggtggatcttggataggctctgataccatgtt 222  Q
    ||   ||| ||| |||| |||||||||||||||||||||||    
T  901710 cccaacaacggtagatcctggataggctctgataccatgtt 901670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 30160211 - 30160137
Alignment:
Q  151 gacccaatgggcatgaagtgtggcattgcggaatcc---caatggtggatcttggataggctctgataccatgtt 222  Q
    |||||||||||||||||| |||||| ||||||||||   ||| ||| ||||||||||||||||||||||||||||    
T  30160211 gacccaatgggcatgaagcgtggcaatgcggaatcccgacaacggtagatcttggataggctctgataccatgtt 30160137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 10429748 - 10429680
Alignment:
Q  61 gcaactaagagcatatcgcaataaaggtgggattaccgacacacaccctcacgcttggggagggatttcca 131  Q
    ||||||| | ||| |||||||| |||||||||||||| ||||||||||||||||  |||| ||||||||||    
T  10429748 gcaactaggggcagatcgcaattaaggtgggattaccaacacacaccctcacgc--ggggtgggatttcca 10429680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 5424772 - 5424804
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  5424772 gttgaaatttggggtctaactcatccttacaaa 5424804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 6183356 - 6183388
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  6183356 gttgaaatttggggtctaactcatccttacaaa 6183388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 22447214 - 22447182
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  22447214 gttgaaatttggggtctaactcatccttacaaa 22447182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 4465104 - 4465177
Alignment:
Q  149 cggacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccatgtt 222  Q
    ||||||||||||||| |||| |||||  ||||||||||||| |||  ||||||||||| |||||||||||||||    
T  4465104 cggacccaatgggcacgaagcgtggcgatgcggaatcccaacggtaaatcttggatagactctgataccatgtt 4465177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 24125176 - 24125144
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  24125176 gttgaaatttggggtctaactcatccttacaaa 24125144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 27760489 - 27760457
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  27760489 gttgaaatttggggtctaactcatccttacaaa 27760457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 5557265 - 5557194
Alignment:
Q  151 gacccaatgggcatgaagtgtggcattgcggaatcccaatggtggatcttggataggctctgataccatgtt 222  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| | ||| ||| ||||||    
T  5557265 gacccaatgggcttgaagcgtggcattgcggaatcccaacggtggatcttgaataagttctaatatcatgtt 5557194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 15102614 - 15102646
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  15102614 gttgaaatttggggtctaactcatccttacaaa 15102646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 16590298 - 16590266
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  16590298 gttgaaatttggggtctaactcatccttacaaa 16590266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 16605082 - 16605114
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  16605082 gttgaaatttggggtctaactcatccttacaaa 16605114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 17096688 - 17096720
Alignment:
Q  14 gttgaaatttggggtctaactcatcctaacaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  17096688 gttgaaatttggggtctaactcatccttacaaa 17096720  T

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